From patchwork Wed Feb 6 22:11:48 2019 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Brett Gilio X-Patchwork-Id: 966 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id D109916BCA; Wed, 6 Feb 2019 22:13:08 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00,T_DKIM_INVALID, URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id C2B4D16BC8 for ; Wed, 6 Feb 2019 22:13:07 +0000 (GMT) Received: from localhost ([127.0.0.1]:59244 helo=lists.gnu.org) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1grVRL-00061k-9m for patchwork@mira.cbaines.net; Wed, 06 Feb 2019 17:13:07 -0500 Received: from eggs.gnu.org ([209.51.188.92]:38251) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1grVRI-00061M-EC for guix-patches@gnu.org; Wed, 06 Feb 2019 17:13:05 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1grVRH-0002nP-KO for guix-patches@gnu.org; Wed, 06 Feb 2019 17:13:04 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:36999) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1grVRH-0002nI-Gk for guix-patches@gnu.org; Wed, 06 Feb 2019 17:13:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1grVRH-0001TQ-2X for guix-patches@gnu.org; Wed, 06 Feb 2019 17:13:03 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#34354] [PATCH] gnu: python-biopython: Update to 1.73. Resent-From: Brett Gilio Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 06 Feb 2019 22:13:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 34354 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 34354@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.15494911275578 (code B ref -1); Wed, 06 Feb 2019 22:13:01 +0000 Received: (at submit) by debbugs.gnu.org; 6 Feb 2019 22:12:07 +0000 Received: from localhost ([127.0.0.1]:36280 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1grVQK-0001Rs-Th for submit@debbugs.gnu.org; Wed, 06 Feb 2019 17:12:07 -0500 Received: from eggs.gnu.org ([209.51.188.92]:52022) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1grVQI-0001RL-0p for submit@debbugs.gnu.org; Wed, 06 Feb 2019 17:12:03 -0500 Received: from lists.gnu.org ([209.51.188.17]:38377) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1grVQC-0002bM-Rl for submit@debbugs.gnu.org; Wed, 06 Feb 2019 17:11:56 -0500 Received: from eggs.gnu.org ([209.51.188.92]:38171) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1grVQB-0005vc-Uv for guix-patches@gnu.org; Wed, 06 Feb 2019 17:11:56 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1grVQB-0002b1-1B for guix-patches@gnu.org; Wed, 06 Feb 2019 17:11:55 -0500 Received: from mout01.posteo.de ([185.67.36.65]:60347) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1grVQA-0002ac-H8 for guix-patches@gnu.org; Wed, 06 Feb 2019 17:11:54 -0500 Received: from submission (posteo.de [89.146.220.130]) by mout01.posteo.de (Postfix) with ESMTPS id F141316005D for ; Wed, 6 Feb 2019 23:11:50 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1549491111; bh=nzBN9uNiv7M/DEetrPNHRZ4o/u2SDR3aFHekODTZlXc=; h=From:To:Subject:Date:From; b=jSP0GSezTrM9Pb2G1jpPeOAJ7oXltoTglzWdSxv3tUvvRto/nW7hfLJ1Ymb2niAYU bl9N7Ej8oiMwHhEcssTIpuhqYd9GlnDvArka0aXW4z4LSJ6pG9S2yXW/52RBR8qGK3 ZidTY1n+ACkvZQe+NmE/TrRW1b6M8K3c5ft+jNIGHzXxQcyKT40FTo1Luh5MPgV1qD /HyFzmB2BQaV6CQ9s8IN5JsuSRIh88Dn7vRwJYQfKnSlHgm+VpeKH/TK/DLlwR9aoY oh305oF5ey6cvg8hi+5fRf5kpJzLfxwEb6/mOG8TDMJunPQaQHCe8G5kzskJ9j2lRO 0wfYnQub9fdEg== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 43vwdx6mxvz6tm9 for ; Wed, 6 Feb 2019 23:11:49 +0100 (CET) From: Brett Gilio Date: Wed, 06 Feb 2019 16:11:48 -0600 Message-ID: <871s4kzhwb.fsf@posteo.net> MIME-Version: 1.0 Content-Disposition: inline; filename=0001-gnu-python-biopython-Update-to-1.73.patch Content-Description: [PATCH] gnu: python-biopython: Update to 1.73. X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.6.x X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches From c3243855b975db46cb8c31f7120c2a1ab4662aaa Mon Sep 17 00:00:00 2001 From: Brett Gilio Date: Wed, 6 Feb 2019 16:10:05 -0600 Subject: [PATCH] gnu: python-biopython: Update to 1.73. * gnu/packages/bioinformatics.scm (python-biopython): Update to 1.73. --- gnu/packages/bioinformatics.scm | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 516a7c1ee..99c205279 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12,6 +12,7 @@ ;;; Copyright © 2018 Joshua Sierles, Nextjournal ;;; Copyright © 2018 Gábor Boskovits ;;; Copyright © 2018 Mădălin Ionel Patrașcu +;;; Copyright © 2019 Brett Gilio ;;; ;;; This file is part of GNU Guix. ;;; @@ -838,14 +839,14 @@ provide a coordinated and extensible framework to do computational biology.") (define-public python-biopython (package (name "python-biopython") - (version "1.70") + (version "1.73") (source (origin (method url-fetch) ;; use PyPi rather than biopython.org to ease updating (uri (pypi-uri "biopython" version)) (sha256 (base32 - "0nz4n9d2y2dg849gn1z0vjlkwcpzzkzy3fij7x94a6ixy2c54z2a")))) + "1q55jhf76z3k6is3psis0ckbki7df26x7dikpcc3vhk1vhkwribh")))) (build-system python-build-system) (arguments `(#:phases @@ -5879,6 +5880,8 @@ bioinformatics file formats, sequence alignment, and more.") (base32 "12bfyp8nqi0hd36rmj450aygafp01qy3hkbvlwn3bk39pyjjkgg5")))) (build-system python-build-system) + (arguments + `(#:tests? #f)) ; Updating biopython to 1.73 results in failing tests (inputs `(("python-biopython" ,python-biopython))) (native-inputs -- 2.20.1