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[59.149.170.72]) by smtp.gmail.com with ESMTPSA id n2sm12470536pgv.37.2020.06.27.10.49.10 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 27 Jun 2020 10:49:11 -0700 (PDT) From: Peter Lo Date: Sun, 28 Jun 2020 01:48:58 +0800 Message-Id: <20200627174858.10656-1-peterloleungyau@gmail.com> X-Mailer: git-send-email 2.17.1 Received-SPF: pass client-ip=2607:f8b0:4864:20::543; envelope-from=peterloleungyau@gmail.com; helo=mail-pg1-x543.google.com X-detected-operating-system: by eggs.gnu.org: No matching host in p0f cache. That's all we know. X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=_AUTOLEARN X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-shapforxgboost): New variable. --- gnu/packages/cran.scm | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ab5e57c0e2..8e2a9433c1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22325,3 +22325,38 @@ across a wide array of bioinformatic R packages.") and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning.") (license license:gpl3))) + +(define-public r-shapforxgboost + (package + (name "r-shapforxgboost") + (version "0.0.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "SHAPforxgboost" version)) + (sha256 + (base32 + "0k6bg27wqnkzv82bcahbapmqhiz6rvnx81m23zbjw58c7lwshgnq")))) + (properties + `((upstream-name . "SHAPforxgboost"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bbmisc" ,r-bbmisc) + ("r-data-table" ,r-data-table) + ("r-ggextra" ,r-ggextra) + ("r-ggforce" ,r-ggforce) + ("r-ggplot2" ,r-ggplot2) + ("r-ggpubr" ,r-ggpubr) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-xgboost" ,r-xgboost))) + (home-page + "https://github.com/liuyanguu/SHAPforxgboost") + (synopsis "SHAP Plots for 'XGBoost'") + (description + "The aim of @code{SHAPforxgboost} is to aid in visual data +investigations using SHAP (SHapley Additive exPlanation) visualization +plots for @code{XGBoost}. It provides summary plot, dependence plot, +interaction plot, and force plot. It relies on the 'dmlc/xgboost' +package to produce SHAP values. Please refer to 'slundberg/shap' for +the original implementation of SHAP in 'Python'.") + (license license:expat)))