From patchwork Tue Apr 21 16:29:04 2020 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Eric Brown X-Patchwork-Id: 21401 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id AAA0727BBE4; Tue, 21 Apr 2020 17:30:59 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.9 required=5.0 tests=BAYES_00,MAILING_LIST_MULTI, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id 78CBD27BBE1 for ; Tue, 21 Apr 2020 17:30:59 +0100 (BST) Received: from localhost ([::1]:33106 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jQvnW-0004hh-W0 for patchwork@mira.cbaines.net; Tue, 21 Apr 2020 12:30:59 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:55924) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jQvme-0003rm-EB for guix-patches@gnu.org; Tue, 21 Apr 2020 12:30:05 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.90_1) (envelope-from ) id 1jQvmc-0002Xu-RW for guix-patches@gnu.org; Tue, 21 Apr 2020 12:30:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:39117) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1jQvmc-0002XR-EB for guix-patches@gnu.org; Tue, 21 Apr 2020 12:30:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1jQvmc-0006Tj-8h for guix-patches@gnu.org; Tue, 21 Apr 2020 12:30:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#40747] New package: r-mstate Resent-From: Eric Brown Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 21 Apr 2020 16:30:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 40747 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: 40747@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.158748654924814 (code B ref -1); Tue, 21 Apr 2020 16:30:02 +0000 Received: (at submit) by debbugs.gnu.org; 21 Apr 2020 16:29:09 +0000 Received: from localhost ([127.0.0.1]:50663 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jQvll-0006SA-Ej for submit@debbugs.gnu.org; Tue, 21 Apr 2020 12:29:09 -0400 Received: from lists.gnu.org ([209.51.188.17]:55043) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jQvlj-0006S2-FS for submit@debbugs.gnu.org; Tue, 21 Apr 2020 12:29:07 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:55692) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jQvlj-0002yn-0k for guix-patches@gnu.org; Tue, 21 Apr 2020 12:29:07 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.90_1) (envelope-from ) id 1jQvli-0001RK-9D for guix-patches@gnu.org; Tue, 21 Apr 2020 12:29:06 -0400 Received: from 216-80-121-173.s13.demp-ubr2.chi-demp.il.static.cable.rcncustomer.com ([216.80.121.173]:60346 helo=ericcbrown.com) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jQvlh-0001Qu-Qo for guix-patches@gnu.org; Tue, 21 Apr 2020 12:29:05 -0400 Received: from localhost (unknown [192.168.1.1]) by ericcbrown.com (Postfix) with ESMTPSA id 0B9D1498E9A4 for ; Tue, 21 Apr 2020 11:29:05 -0500 (CDT) From: Eric Brown Mail-reply-to: Eric Brown Mail-followup-to: Eric Brown Date: Tue, 21 Apr 2020 11:29:04 -0500 Message-ID: <877dy8reen.fsf@ericcbrown.com> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/26.3 (gnu/linux) MIME-Version: 1.0 Received-SPF: none client-ip=216.80.121.173; envelope-from=ecbrown@ericcbrown.com; helo=ericcbrown.com X-detected-operating-system: by eggs.gnu.org: First seen = 2020/04/21 12:28:07 X-ACL-Warn: Detected OS = Mac OS X [generic] [fuzzy] X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches Dear Guix: Please see attached diff for r-mstate. Best regards, Eric From 69141a3f79452e9a022b20e1b05b565e819386a2 Mon Sep 17 00:00:00 2001 From: Eric Brown Date: Tue, 21 Apr 2020 11:20:16 -0500 Subject: [PATCH] gnu: Add r-mstate. * gnu/packages/cran.scm (r-mstate): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 70cb7cc700..935442b4ef 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21162,3 +21162,29 @@ evaluated interactively.") Bayes factors, posterior model probabilities, and normalizing constants in general, via different versions of bridge sampling.") (license license:gpl2+))) + +(define-public r-mstate + (package + (name "r-mstate") + (version "0.2.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "mstate" version)) + (sha256 + (base32 + "0qnhivbibzss8yfsg44cvbf73n4jj4i28rbdysl88g14ig5sabgv")))) + (properties `((upstream-name . "mstate"))) + (build-system r-build-system) + (propagated-inputs + `(("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-survival" ,r-survival))) + (home-page + "https://www.lumc.nl/org/bds/research/medische-statistiek/survival-analysis/") + (synopsis + "Data Preparation, Estimation and Prediction in Multi-State Models") + (description + "Contains functions for data preparation, descriptives, hazard estimation +and prediction with Aalen-Johansen or simulation in competing risks and +multi-state models.") + (license license:gpl2+))) -- 2.26.2