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Processed in 0.00948 secs); 27 Mar 2020 23:51:28 -0000 Received: from unknown (HELO localhost.localdomain) (kuba@kadziolka.net@188.123.215.55) by pat.zlotemysli.pl with AES256-SHA encrypted SMTP; 28 Mar 2020 00:51:28 +0100 From: Jakub =?utf-8?b?S8SFZHppb8WCa2E=?= Date: Sat, 28 Mar 2020 00:51:25 +0100 Message-Id: <20200327235125.3250-1-kuba@kadziolka.net> X-Mailer: git-send-email 2.26.0 MIME-Version: 1.0 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 3.x X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (python-intervaltree): Update to 3.0.2. [arguments]: Don't skip the tests. --- It turns out I need python-intervaltree 3.0 as a dependency for one of the packages I'm working on. Cc: Ricardo - you added python-pygenometracks, the only dependent. Could you re-test it, just in case? gnu/packages/bioinformatics.scm | 14 ++++++++++---- 1 file changed, 10 insertions(+), 4 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index da3fe1d2c9..a8e4c830ae 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -16,6 +16,7 @@ ;;; Copyright © 2019 Brian Leung ;;; Copyright © 2019 Brett Gilio ;;; Copyright © 2020 Björn Höfling +;;; Copyright © 2020 Jakub Kądziołka ;;; ;;; This file is part of GNU Guix. ;;; @@ -13548,17 +13549,22 @@ allowing the insertion of arbitrary types into the tree.") (define-public python-intervaltree (package (name "python-intervaltree") - (version "2.1.0") + (version "3.0.2") (source (origin (method url-fetch) (uri (pypi-uri "intervaltree" version)) (sha256 (base32 - "02w191m9zxkcjqr1kv2slxvhymwhj3jnsyy3a28b837pi15q19dc")))) + "0wz234g6irlm4hivs2qzmnywk0ss06ckagwh15nflkyb3p462kyb")))) (build-system python-build-system) - ;; FIXME: error when collecting tests - (arguments '(#:tests? #f)) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'check 'import-mismatch-error-workaround + (lambda _ + (setenv "PY_IGNORE_IMPORTMISMATCH" "1") + #t))))) (propagated-inputs `(("python-sortedcontainers" ,python-sortedcontainers))) (native-inputs