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Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: laurent.gatto@gmail.com, rekado@elephly.net, zimon.toutoune@gmail.com, guix-patches@gnu.org Resent-Date: Tue, 05 Nov 2024 16:51:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 74212 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 74212@debbugs.gnu.org Cc: Navid Afkhami , Laurent Gatto , Ricardo Wurmus , Simon Tournier X-Debbugs-Original-To: X-Debbugs-Original-Xcc: Laurent Gatto , Ricardo Wurmus , Simon Tournier Received: via spool by submit@debbugs.gnu.org id=B.173082540219421 (code B ref -1); Tue, 05 Nov 2024 16:51:02 +0000 Received: (at submit) by debbugs.gnu.org; 5 Nov 2024 16:50:02 +0000 Received: from localhost ([127.0.0.1]:44579 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t8Mkj-000531-JM for submit@debbugs.gnu.org; Tue, 05 Nov 2024 11:50:02 -0500 Received: from lists.gnu.org ([209.51.188.17]:59528) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t8Mkd-00052i-Ag for submit@debbugs.gnu.org; Tue, 05 Nov 2024 11:49:59 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1t8Mka-0008Bc-JL for guix-patches@gnu.org; Tue, 05 Nov 2024 11:49:53 -0500 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1t8MkX-0004ND-8Q for guix-patches@gnu.org; Tue, 05 Nov 2024 11:49:51 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1730825385; x=1732639786; bh=ixElNNBTuYNrB/Y 5v950HtFRki5KYF9gfFwxE2JO7ug=; b=bte3AGE0Y2GwMWRUu0Rcbr8gU9kVA8M YN1j9REGe71QUSw9cnNPDPHSzjs6iPwOKJ3z2wCZE94dUSuewVgxfMBj7ZT7Khs0 OIRClC7pfLTEJkUrjnE731FDw0pzpr3yhsOdbJqY8R+RHYy14p6lhnAmYcHy5Y4k n8TpB+lX8bIk= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 518FAA023C for ; Tue, 5 Nov 2024 17:49:45 +0100 (CET) Received: from localhost (141.80.121.182) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.11; Tue, 5 Nov 2024 17:49:44 +0100 From: Navid Afkhami Date: Tue, 5 Nov 2024 16:49:39 +0000 Message-ID: <797d9d30ec2c66d2e4eed6f9e6893a855c5189e3.1730825379.git.navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.43.0 MIME-Version: 1.0 X-Originating-IP: [141.80.121.182] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3223-9.1.2019-28778.001 X-TM-AS-Result: No-10--7.931400-5.000000 X-TMASE-MatchedRID: SzbEz7SZt2sEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhdvd jZ1tR/4hz0ptPRZypjnk9EII6md85IdGq5XlvEmXUrLQDoO1CVdrcVVB7l3jO7fZ43CDf3t1gyC DHnWW5JQMkbHh8hhHAI3KNeV/1h2+YyzfEmFWHCfk+QJ4zu017ReMyzU2fkklVc6oxg15iGYRLj qoJJt/9bkluvFQnURkoli4ZoiOHT/uW6lJECluluhy4rv4kGUk4FOQD8uxqjmmrVVYKkDAXToUM RfhCxqh6RKiZhXD+23b4eRTZfitXA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--7.931400-5.000000 X-TMASE-Version: SMEX-14.0.0.3223-9.1.2019-28778.001 X-TM-SNTS-SMTP: 2B26EED1CA31C2E95C5894765D0AC3007F543FB4404850D9D819833C50508E332000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_VALIDITY_CERTIFIED_BLOCKED=0.001, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-seuratextend): New variable. Change-Id: I9ce0d90a2f05d4e074459046c380849cf9f63978 --- gnu/packages/cran.scm | 47 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 47 insertions(+) base-commit: 4c56d0cccdc44e12484b26332715f54768738c5f prerequisite-patch-id: 8f31c5ea3685b59fb6907a9582c0ca537c9c38bd diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ab369c116c..b312c30099 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -38320,6 +38320,53 @@ (define-public r-scattermore data to rasters. It speeds up plotting of data with millions of points.") (license license:gpl3+))) +(define-public r-seuratextend + (let ((commit "5382e921f7b365c7b75b20d07cb455e4390fe36f") + (revision "1")) + (package + (name "r-seuratextend") + (version (git-version "1.0.7" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/huayc09/SeuratExtend") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1rlx20jyfdrymxn8b9dsf9n9jk9rwjjx1wy2f00layvd57g9ch2q")))) + (properties `((upstream-name . "SeuratExtend"))) + (build-system r-build-system) + (propagated-inputs (list r-biocmanager + r-dplyr + r-ggplot2 + r-ggpubr + r-glue + r-hdf5r + r-magrittr + r-mosaic + r-purrr + r-remotes + r-reshape2 + r-reticulate + r-rlist + r-scales + r-seurat + r-seuratextenddata + r-seuratobject + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/huayc09/SeuratExtend") + (synopsis "Enhanced toolkit for scRNA-seq analysis") + (description + "This package is designed to improve and simplify the analysis of scRNA-seq data. +It uses the Seurat object for this purpose. It provides an array of +enhanced visualization tools, an integrated functional and pathway +analysis pipeline, seamless integration with popular Python tools, +and a suite of utility functions to aid in data manipulation and +presentation.") + (license license:gpl3+)))) + (define-public r-seuratextenddata (let ((commit "e7f17d4bacca436705b06b2cd0c879f83add9271") (revision "1"))