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Change-Id: I337463c66040179f5a4a1622fb759a87ebd2344a --- gnu/packages/cran.scm | 47 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 47 insertions(+) base-commit: d6f775c30c6f47e174f6110d1089edc6315600e4 prerequisite-patch-id: 54292fa0b75533f02730e2da44993ad685d4a432 prerequisite-patch-id: 360575ef7e49c4e4e6b52644964df061856aee57 prerequisite-patch-id: 3904682af2961b8cb06ced06ab62c60604114dad prerequisite-patch-id: 0e861c88ccc360c3a1bcd0ce92d90a9aeb1455c0 diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 6c0861509d..1c2efc6b4c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13107,6 +13107,53 @@ (define-public r-shinyace environment within Shiny.") (license license:expat))) +(define-public r-raceid + (package + (name "r-raceid") + (version "0.3.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "RaceID" version)) + (sha256 + (base32 "0zqas0dfsvcbjzv2b83zy13pxyzfhh81xrfbzxq8a7ykk0nyrx26")))) + (properties `((upstream-name . "RaceID"))) + (build-system r-build-system) + (propagated-inputs (list r-cluster + r-coop + r-fateid + r-fnn + r-fpc + r-ggplot2 + r-harmony + r-ica + r-igraph + r-irlba + r-leiden + r-locfit + r-mass + r-matrix + r-matrixstats + r-pheatmap + r-princurve + r-quadprog + r-randomforest + r-rcolorbrewer + r-rcpp + r-rtsne + r-runner + r-umap + r-vegan)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=RaceID") + (synopsis + "Algorithm for inferring cell types from single-cell RNA-seq data") + (description + "This tool provides an algorithm to identify rare cell types in single-cell data. +It also identifies abundant cell types. The method is based on transcript +counts obtained with unique molecular identifies.") + (license license:gpl3))) + (define-public r-rafalib (package (name "r-rafalib")