From patchwork Thu Dec 19 19:24:08 2019 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 16570 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 9E01917955; Thu, 19 Dec 2019 19:25:13 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00,T_DKIM_INVALID, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id 5ABC917941 for ; Thu, 19 Dec 2019 19:25:13 +0000 (GMT) Received: from localhost ([::1]:47094 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1ii1Q8-0002SD-SE for patchwork@mira.cbaines.net; Thu, 19 Dec 2019 14:25:12 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:55035) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1ii1Q0-0002Rz-4n for guix-patches@gnu.org; Thu, 19 Dec 2019 14:25:05 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1ii1Py-0001nS-R2 for guix-patches@gnu.org; Thu, 19 Dec 2019 14:25:04 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:39569) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1ii1Py-0001k1-5B for guix-patches@gnu.org; Thu, 19 Dec 2019 14:25:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1ii1Py-0001SJ-0J for guix-patches@gnu.org; Thu, 19 Dec 2019 14:25:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#38676] [PATCH 1/2] gnu: libgtextutils: Build with GCC 5 References: <5bda0f11-1af4-0e9e-273f-325a36332126@mdc-berlin.de> In-Reply-To: <5bda0f11-1af4-0e9e-273f-325a36332126@mdc-berlin.de> Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 19 Dec 2019 19:25:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 38676 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <38676@debbugs.gnu.org> Cc: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Received: via spool by 38676-submit@debbugs.gnu.org id=B38676.15767834685538 (code B ref 38676); 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Thu, 19 Dec 2019 20:24:23 +0100 (CET) Received: from SW-IT-P-CAS4.mdc-berlin.net (mgw10-4.mdc-berlin.de [141.80.113.59]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS for <38676@debbugs.gnu.org>; Thu, 19 Dec 2019 20:24:23 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-CAS4.mdc-berlin.net (141.80.113.59) with Microsoft SMTP Server (TLS) id 14.3.468.0; Thu, 19 Dec 2019 20:24:22 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Thu, 19 Dec 2019 20:24:08 +0100 Message-ID: <20191219192409.16812-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.24.1 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-TM-AS-Product-Ver: SMEX-12.5.0.1684-8.5.1010-25114.002 X-TM-AS-Result: No-6.128100-8.000000-10 X-TMASE-MatchedRID: GJCFli0Pq7nsqBPQL1gf426HurDH4PpPS1zwNuiBtITfUZT83lbkECMA GeUnRtvaL68Fzj80DCdPVdQTub7xRKheHRKIaMTMbBMSu4v05tOiH9ZXzU+2Yh1j1N5bmwJn75T 4BPuNkdr5GsB8aEHR3y2+lyx46iL0+5T6zKmlZhdV1zhVw8duYuuLFZZYlisfv1l2Uvx6idoLbi gRnpKlKTpcQTtiHDgWKJ2Bu+FL9LGh5l4ytH21mpi8Cr9luzfPb2aEATc/R+ztTpBx3EL62w== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.128100-8.000000 X-TMASE-Version: SMEX-12.5.0.1684-8.5.1010-25114.002 X-TM-SNTS-SMTP: AC083FE0A861E6D5054CE8814936AD7337EBD89CC54E482B5598324A69C114F02000:9 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/textutils.scm (libgtextutils)[native-inputs]: Add gcc-5. --- gnu/packages/textutils.scm | 3 +++ 1 file changed, 3 insertions(+) diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm index 668260b7d8..cf90779978 100644 --- a/gnu/packages/textutils.scm +++ b/gnu/packages/textutils.scm @@ -17,6 +17,7 @@ ;;; Copyright © 2018 Pierre Neidhardt ;;; Copyright © 2018 Meiyo Peng ;;; Copyright © 2019 Yoshinori Arai +;;; Copyright © 2019 Mădălin Ionel Patrașcu ;;; ;;; This file is part of GNU Guix. ;;; @@ -47,6 +48,7 @@ #:use-module (gnu packages autotools) #:use-module (gnu packages base) #:use-module (gnu packages compression) + #:use-module (gnu packages gcc) #:use-module (gnu packages gettext) #:use-module (gnu packages java) #:use-module (gnu packages ncurses) @@ -232,6 +234,7 @@ nested include statements).") (native-inputs `(("autoconf" ,autoconf) ("automake" ,automake) + ("gcc" ,gcc-5) ;; doesn't build with later versions ("libtool" ,libtool))) (home-page "https://github.com/agordon/libgtextutils") (synopsis "Gordon's text utils library") From patchwork Thu Dec 19 19:24:09 2019 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 16569 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 7571417955; Thu, 19 Dec 2019 19:25:11 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00,T_DKIM_INVALID, URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id F302117941 for ; Thu, 19 Dec 2019 19:25:10 +0000 (GMT) Received: from localhost ([::1]:47092 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1ii1Q6-0002SB-9g for patchwork@mira.cbaines.net; Thu, 19 Dec 2019 14:25:10 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:55022) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1ii1Q0-0002Ry-2k for guix-patches@gnu.org; Thu, 19 Dec 2019 14:25:05 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1ii1Py-0001na-Qw for guix-patches@gnu.org; Thu, 19 Dec 2019 14:25:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:39570) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1ii1Py-0001m2-K3 for guix-patches@gnu.org; Thu, 19 Dec 2019 14:25:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1ii1Py-0001SQ-F6 for guix-patches@gnu.org; Thu, 19 Dec 2019 14:25:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#38676] [PATCH 2/2] gnu: fastx-toolkit: Build with GCC 6 Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 19 Dec 2019 19:25:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 38676 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <38676@debbugs.gnu.org> Cc: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Received: via spool by 38676-submit@debbugs.gnu.org id=B38676.15767834825565 (code B ref 38676); 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b=KzgrDtdgnQhAhtXuc3iNfk+9iaCodZwvSHv1qhsCMYa9EtBgMGY /bGlr9DZ6anBBOh2XnGfwZd3Jyu7n6VYCsIRN2jaLqdtAINkBdSzXSjEG40m/eP0 caY1PmaOOkWnA/XRj381GlsONzYwWIzchrw1j7BwHcFR2+ExqDx7AhPc= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id nrlm7aFiPv2V for <38676@debbugs.gnu.org>; Thu, 19 Dec 2019 20:24:38 +0100 (CET) Received: from SW-IT-P-CAS4.mdc-berlin.net (mgw10-4.mdc-berlin.de [141.80.113.59]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS for <38676@debbugs.gnu.org>; Thu, 19 Dec 2019 20:24:38 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-CAS4.mdc-berlin.net (141.80.113.59) with Microsoft SMTP Server (TLS) id 14.3.468.0; Thu, 19 Dec 2019 20:24:34 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Thu, 19 Dec 2019 20:24:09 +0100 Message-ID: <20191219192409.16812-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.24.1 In-Reply-To: <20191219192409.16812-1-madalinionel.patrascu@mdc-berlin.de> References: <20191219192409.16812-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-TM-AS-Product-Ver: SMEX-12.5.0.1684-8.5.1010-25114.002 X-TM-AS-Result: No-2.695000-8.000000-10 X-TMASE-MatchedRID: OVezK//6BMrKBI6o17vfgtqQ6Du6Gk+zNV9S7O+u3KZYwVHjLI3nekAc 6DyoS2rIrXMOxnDE+MR1bKewKpB/rcQeKtf4WPRzTT9ZveSPAxVr9+Kgn2XgePj/xqm3b+MoDhb Suebtmdl9LQinZ4QefCP/VFuTOXUTG8/0CISn+KC25maLCP+Wct0H8LFZNFG7doMssNsUwYVptO g0kshUWLodxUWrFXNYHQvlXATMFrICjSqYVX0wOoH3IAK1rnuftqfJXN2af/pqyjIZ0RDpq8S1+ C09V7Z6LUaQ15RP7HhcKRK3DM/KmiQGdl1tQI7t0/5HQxvVB1U0+aGhUx8J2mlvyA1GNPX1 X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.695000-8.000000 X-TMASE-Version: SMEX-12.5.0.1684-8.5.1010-25114.002 X-TM-SNTS-SMTP: 119D7AC00EC108E96FCB7EE37DC713227E326E7446AB15A72142659943EEDA432000:9 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (fastx-toolkit)[native-inputs]: Add gcc-6. --- gnu/packages/bioinformatics.scm | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 528b603476..27ff70b1fb 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2995,7 +2995,8 @@ reasonable amount of time and memory. For large alignments, FastTree is (inputs `(("libgtextutils" ,libgtextutils))) (native-inputs - `(("pkg-config" ,pkg-config))) + `(("gcc" ,gcc-6) ;; doesn't build with later versions + ("pkg-config" ,pkg-config))) (home-page "http://hannonlab.cshl.edu/fastx_toolkit/") (synopsis "Tools for FASTA/FASTQ file preprocessing") (description