From patchwork Thu Jul 11 14:35:22 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 66148 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 25A6C27BBEA; Thu, 11 Jul 2024 15:36:24 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 862BA27BBE2 for ; Thu, 11 Jul 2024 15:36:23 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1sRutw-0003tP-33; Thu, 11 Jul 2024 10:36:04 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sRutu-0003nQ-Hv for guix-patches@gnu.org; Thu, 11 Jul 2024 10:36:02 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1sRutu-0004Jp-7M for guix-patches@gnu.org; Thu, 11 Jul 2024 10:36:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1sRutt-00019l-Pi for guix-patches@gnu.org; Thu, 11 Jul 2024 10:36:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#72062] [PATCH 1/4] gnu: Add openpmix. References: <20240711143230.12467-1-romain.garbage@inria.fr> In-Reply-To: <20240711143230.12467-1-romain.garbage@inria.fr> Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 11 Jul 2024 14:36:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 72062 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 72062@debbugs.gnu.org Cc: ludovic.courtes@inria.fr, Romain GARBAGE Received: via spool by 72062-submit@debbugs.gnu.org id=B72062.17207085554410 (code B ref 72062); Thu, 11 Jul 2024 14:36:01 +0000 Received: (at 72062) by debbugs.gnu.org; 11 Jul 2024 14:35:55 +0000 Received: from localhost ([127.0.0.1]:52363 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRutm-00018v-Ti for submit@debbugs.gnu.org; Thu, 11 Jul 2024 10:35:55 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:49022) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRutk-00018c-KA for 72062@debbugs.gnu.org; Thu, 11 Jul 2024 10:35:54 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:mime-version: content-transfer-encoding; bh=crT74xfYN/yker4IvbpOuL6NoQm/P175aP7P34bLYOU=; b=oSJiyCWOE2J264+82qIeouxpDx3J54WIBMp+bQKcVhH+bl0K0kvnQ6Fp I7ExYJHw6ZDlDR65Oa48emAQNeQ8mbEjXPgKAwLjmtgcVh1U5Zsv6z0x8 qyoxPVLZR255UzZnJPqxLkUOMsFLazGZT0uFqcmGFjn8b6YBySi44003C E=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; dmarc=fail (p=none dis=none) d=inria.fr X-IronPort-AV: E=Sophos;i="6.09,200,1716242400"; d="scan'208";a="91951976" Received: from lfbn-bay-1-62-70.w83-193.abo.wanadoo.fr (HELO guix-A102.home) ([83.193.153.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Jul 2024 16:35:46 +0200 From: Romain GARBAGE Date: Thu, 11 Jul 2024 16:35:22 +0200 Message-ID: <20240711143540.25601-1-romain.garbage@inria.fr> X-Mailer: git-send-email 2.45.1 MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/parallel.scm (openpmix): New variable. Change-Id: Id23bc710c9b61ede0aebf7e2a18863fbe5fb8304 --- gnu/packages/parallel.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/parallel.scm b/gnu/packages/parallel.scm index a16a0d8689..4a57e85e6c 100644 --- a/gnu/packages/parallel.scm +++ b/gnu/packages/parallel.scm @@ -14,6 +14,7 @@ ;;; Copyright © 2021 Stefan Reichör ;;; Copyright © 2024 Zheng Junjie <873216071@qq.com> ;;; Copyright © 2024 David Elsing +;;; Copyright © 2024 Romain Garbage ;;; ;;; This file is part of GNU Guix. ;;; @@ -51,6 +52,7 @@ (define-module (gnu packages parallel) #:use-module (gnu packages documentation) #:use-module (gnu packages flex) #:use-module (gnu packages freeipmi) + #:use-module (gnu packages libevent) #:use-module (gnu packages linux) #:use-module (gnu packages maths) #:use-module (gnu packages mpi) @@ -612,3 +614,33 @@ (define-public psimd "This header-only C++ library provides a portable interface to single-instruction multiple-data (SIMD) intrinsics.") (license license:expat)))) + +(define-public openpmix + (package + (name "openpmix") + (version "4.2.8") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/openpmix/openpmix/releases/download/v" + version "/pmix-" version ".tar.bz2")) + (sha256 + (base32 + "1j9xlhqrrmgjdkwakamn78y5gj756adi53hn25zksgr3is3l5d09")))) + (build-system gnu-build-system) + (arguments + (list #:configure-flags #~(list (string-append "--with-hwloc=" + (ungexp (this-package-input "hwloc") "lib"))))) + (inputs (list libevent + `(,hwloc "lib"))) + (native-inputs (list perl + python)) + (synopsis "PMIx library") + (description + "PMIx is an application programming interface standard that provides +libraries and programming models with portable and well-defined access +to commonly needed services in distributed and parallel computing +systems.") + (home-page "https://pmix.org/") + ;; The provided license is kind of BSD-style but specific. + (license (license:fsf-free "https://github.com/openpmix/openpmix?tab=License-1-ov-file#License-1-ov-file")))) From patchwork Thu Jul 11 14:35:23 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 66149 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id B4F5927BBE9; Thu, 11 Jul 2024 15:36:40 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 7084127BBE2 for ; Thu, 11 Jul 2024 15:36:39 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1sRutw-0003tr-DJ; Thu, 11 Jul 2024 10:36:04 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sRutu-0003p5-VO for guix-patches@gnu.org; Thu, 11 Jul 2024 10:36:03 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1sRutu-0004K0-MO for guix-patches@gnu.org; Thu, 11 Jul 2024 10:36:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1sRutu-00019t-9K for guix-patches@gnu.org; Thu, 11 Jul 2024 10:36:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#72062] [PATCH 2/4] gnu: Add prrte. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 11 Jul 2024 14:36:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 72062 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 72062@debbugs.gnu.org Cc: ludovic.courtes@inria.fr, Romain GARBAGE Received: via spool by 72062-submit@debbugs.gnu.org id=B72062.17207085594426 (code B ref 72062); Thu, 11 Jul 2024 14:36:02 +0000 Received: (at 72062) by debbugs.gnu.org; 11 Jul 2024 14:35:59 +0000 Received: from localhost ([127.0.0.1]:52366 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRutq-00019K-IN for submit@debbugs.gnu.org; Thu, 11 Jul 2024 10:35:58 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:49022) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRutm-00018c-Ee for 72062@debbugs.gnu.org; Thu, 11 Jul 2024 10:35:55 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=yqsPhFoI4Fl83DImr6eG3PxIPhBaoR6gI55hWdqQksI=; b=OJISyFNR4CHtyxWXrBktG7IOG01daIfwlhXF/xQvsF+Wy/jlOsj2sAtU TThA3Yzb9ZqIF0rG+YTKxpqvzofMB5tAc7wz8h2GsH3V6R11pTAGgKpNa UElUjh++c3V3LNaV2fwBAh3gh+r7dhmrY+y1MowwLqtU4RSIB7VO2z3Ux k=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; dmarc=fail (p=none dis=none) d=inria.fr X-IronPort-AV: E=Sophos;i="6.09,200,1716242400"; d="scan'208";a="91951992" Received: from lfbn-bay-1-62-70.w83-193.abo.wanadoo.fr (HELO guix-A102.home) ([83.193.153.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Jul 2024 16:35:52 +0200 From: Romain GARBAGE Date: Thu, 11 Jul 2024 16:35:23 +0200 Message-ID: <20240711143540.25601-2-romain.garbage@inria.fr> X-Mailer: git-send-email 2.45.1 In-Reply-To: <20240711143540.25601-1-romain.garbage@inria.fr> References: <20240711143540.25601-1-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/parallel.scm (prrte): New variable. Change-Id: I4427eec1a5c7d94ed5f9cbceb55f9372834a8971 --- gnu/packages/parallel.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/parallel.scm b/gnu/packages/parallel.scm index 4a57e85e6c..f173d1b75e 100644 --- a/gnu/packages/parallel.scm +++ b/gnu/packages/parallel.scm @@ -644,3 +644,35 @@ (define-public openpmix (home-page "https://pmix.org/") ;; The provided license is kind of BSD-style but specific. (license (license:fsf-free "https://github.com/openpmix/openpmix?tab=License-1-ov-file#License-1-ov-file")))) + +(define-public prrte + (package + (name "prrte") + (version "3.0.6") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/openpmix/prrte/releases/download/v" + version "/prrte-" version ".tar.bz2")) + (sha256 + (base32 + "0wiy0vk37v4db1jgxza8bci0cczcvj34dalzsrlz05dk45zb7dl3")))) + (build-system gnu-build-system) + (arguments + (list #:configure-flags #~(list (string-append "--with-hwloc=" + (assoc-ref %build-inputs "hwloc")) + (string-append "--with-pmix=" #$(this-package-input "openpmix"))))) + (inputs (list libevent + `(,hwloc "lib") + openpmix)) + (native-inputs (list perl)) + (synopsis "PMIx Reference RunTime Environment (PRRTE)") + (description + "The PMIx Reference RunTime Environment is a runtime environment +containing the reference implementation and capable of operating +within a host SMS. The reference RTE therefore provides an easy way of +exploring PMIx capabilities and testing PMIx-based applications +outside of a PMIx-enabled environment.") + (home-page "https://openpmix.github.io/") + ;; The provided license is kind of BSD-style but specific. + (license (license:fsf-free "https://github.com/openpmix/prrte?tab=License-1-ov-file#License-1-ov-file")))) From patchwork Thu Jul 11 14:35:24 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 66150 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 63D5327BBEA; Thu, 11 Jul 2024 15:37:14 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 78ED627BBE2 for ; Thu, 11 Jul 2024 15:37:13 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1sRuuw-0007pO-2x; Thu, 11 Jul 2024 10:37:06 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sRuus-0007gs-Gz for guix-patches@gnu.org; Thu, 11 Jul 2024 10:37:02 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1sRuus-0006X9-69 for guix-patches@gnu.org; Thu, 11 Jul 2024 10:37:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1sRuur-0001CD-RQ for guix-patches@gnu.org; Thu, 11 Jul 2024 10:37:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#72062] [PATCH 3/4] gnu: Add openmpi-5. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 11 Jul 2024 14:37:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 72062 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 72062@debbugs.gnu.org Cc: ludovic.courtes@inria.fr, Romain GARBAGE Received: via spool by 72062-submit@debbugs.gnu.org id=B72062.17207085624467 (code B ref 72062); Thu, 11 Jul 2024 14:37:01 +0000 Received: (at 72062) by debbugs.gnu.org; 11 Jul 2024 14:36:02 +0000 Received: from localhost ([127.0.0.1]:52370 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRutt-00019r-Vz for submit@debbugs.gnu.org; Thu, 11 Jul 2024 10:36:02 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:49022) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRuto-00018c-MS for 72062@debbugs.gnu.org; Thu, 11 Jul 2024 10:36:00 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=gz3GUCCGboz4dSlYJm5dSxtNWwoXVz4rcj2+M/oSbC4=; b=setHBS4JKU2ahkJhzxk8UB++ZwXJKQtfJ0bnZpA5yZBcVZ5xQHOQZbUP 3l4RBgLYKRNvwQMstowM+7mLz27dlXi1ZtphISdm9DNnmXqmO0RE9AUSw txRvcx+A9mVAXDzgdmP+HjN9l5UETGuIEGCVglqVDJk6/6MpucT1mflr0 U=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; dmarc=fail (p=none dis=none) d=inria.fr X-IronPort-AV: E=Sophos;i="6.09,200,1716242400"; d="scan'208";a="91952006" Received: from lfbn-bay-1-62-70.w83-193.abo.wanadoo.fr (HELO guix-A102.home) ([83.193.153.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Jul 2024 16:35:56 +0200 From: Romain GARBAGE Date: Thu, 11 Jul 2024 16:35:24 +0200 Message-ID: <20240711143540.25601-3-romain.garbage@inria.fr> X-Mailer: git-send-email 2.45.1 In-Reply-To: <20240711143540.25601-1-romain.garbage@inria.fr> References: <20240711143540.25601-1-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/mpi.scm (openmpi-5): New variable. Change-Id: I048692b2e928077c9cfa9fb8076ceb356251e1db --- gnu/packages/mpi.scm | 52 ++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 52 insertions(+) diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm index 6270108b16..8cde8ef044 100644 --- a/gnu/packages/mpi.scm +++ b/gnu/packages/mpi.scm @@ -8,6 +8,7 @@ ;;; Copyright © 2018–2022 Tobias Geerinckx-Rice ;;; Copyright © 2018 Paul Garlick ;;; Copyright © 2019, 2021 Ricardo Wurmus +;;; Copyright © 2024 Romain Garbage ;;; ;;; This file is part of GNU Guix. ;;; @@ -49,6 +50,7 @@ (define-module (gnu packages mpi) #:use-module (gnu packages ncurses) #:use-module (gnu packages parallel) #:use-module (gnu packages pkg-config) + #:use-module (gnu packages python) #:use-module (gnu packages valgrind) #:use-module (srfi srfi-1) #:use-module (ice-9 match)) @@ -307,6 +309,56 @@ (define-public openmpi ;; See file://LICENSE (license license:bsd-2))) +(define-public openmpi-5 + (package/inherit openmpi + (version "5.0.3") + (source + (origin + (method url-fetch) + (uri (string-append "https://www.open-mpi.org/software/ompi/v" + (version-major+minor version) + "/downloads/openmpi-" version ".tar.bz2")) + (sha256 + (base32 "02x9xmpggw77mdpikjjx83j6i4v3gkqbncda73lk5axk0vr841cr")))) + + (inputs (modify-inputs (package-inputs openmpi) + ;; As of Open MPI 5.0.X, PMIx is used to communicate + ;; with SLURM, so SLURM'S PMI is no longer needed. + (delete "slurm") + (append ucx) ;for Infiniband support + (append openpmix) ;for PMI support (launching via "srun") + (append prrte))) ;for PMI support (launching via "srun") + (native-inputs (modify-inputs (package-native-inputs openmpi) + (append python))) + + (outputs '("out" "debug")) + (arguments + (substitute-keyword-arguments (package-arguments openmpi) + ((#:configure-flags flags) + #~(append (list "--enable-prte-prefix-by-default" ;replaces --enable-mpirun-prefix-by-default + ;; Enable support for the 'Process Management + ;; Interface for Exascale' (PMIx) used e.g. by + ;; Slurm for the management communication and + ;; coordination of MPI processes. + (string-append "--with-pmix=" #$(this-package-input "openpmix")) + (string-append "--with-prrte=" #$(this-package-input "prrte")) + + ;; Since 5.x, Infiniband support is provided by ucx. + (string-append "--with-ucx=" #$(this-package-input "ucx"))) + (filter (lambda (e) + (and (not (string-contains e "pmi")) ;; Since 5.x, OpenMPI doesn't support PMI/PMI-2 + ;; Deprecated since 5.x. + (not (string-contains e "enable-mpirun-prefix-by-default")) + ;; Infiniband support is deprecated and superseded by ucx + ;; See https://docs.open-mpi.org/en/main/release-notes/networks.html#miscellaneous-network-notes + (not (string-contains e "openib")))) + #$flags))) + + ((#:phases phases) + #~(modify-phases #$phases + (delete 'remove-absolute) + (delete 'scrub-timestamps))))))) + (define-public openmpi-c++ (package/inherit openmpi (name "openmpi-c++") From patchwork Thu Jul 11 14:35:25 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 66151 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id CC10427BBE9; Thu, 11 Jul 2024 15:37:24 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 3C5B727BBE2 for ; Thu, 11 Jul 2024 15:37:23 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1sRuuy-0007wo-Ck; Thu, 11 Jul 2024 10:37:08 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sRuut-0007jP-4M for guix-patches@gnu.org; Thu, 11 Jul 2024 10:37:03 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1sRuus-0006Zt-PP for guix-patches@gnu.org; Thu, 11 Jul 2024 10:37:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1sRuus-0001CK-AO for guix-patches@gnu.org; Thu, 11 Jul 2024 10:37:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#72062] [PATCH 4/4] gnu: slurm: Add PMIx support. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 11 Jul 2024 14:37:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 72062 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 72062@debbugs.gnu.org Cc: ludovic.courtes@inria.fr, Romain GARBAGE Received: via spool by 72062-submit@debbugs.gnu.org id=B72062.17207085724504 (code B ref 72062); Thu, 11 Jul 2024 14:37:02 +0000 Received: (at 72062) by debbugs.gnu.org; 11 Jul 2024 14:36:12 +0000 Received: from localhost ([127.0.0.1]:52373 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRutu-0001A0-GY for submit@debbugs.gnu.org; Thu, 11 Jul 2024 10:36:12 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:49027) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRuts-00018k-PF for 72062@debbugs.gnu.org; Thu, 11 Jul 2024 10:36:01 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=+jQ0/oHP/eKvOT/d+bvrYUhMykBXe2PNcrO44HN/0dw=; b=ekc0yDpWny70J9Vh8S/Za9nujyu+y22U+F6xwsvdHeU2yNn1gFzEybpR nNpV/RBSbyUFHtMcaGlXz59rWMsGzsoJzLjVOMpZOPbgVTBm/utxs1LMF nVw45fBE23TXkuOWXNC7UHvwQR0+WvseVJWeY1XiC53LFUWNBo2rQwvz5 s=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; dmarc=fail (p=none dis=none) d=inria.fr X-IronPort-AV: E=Sophos;i="6.09,200,1716242400"; d="scan'208";a="91952013" Received: from lfbn-bay-1-62-70.w83-193.abo.wanadoo.fr (HELO guix-A102.home) ([83.193.153.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Jul 2024 16:36:00 +0200 From: Romain GARBAGE Date: Thu, 11 Jul 2024 16:35:25 +0200 Message-ID: <20240711143540.25601-4-romain.garbage@inria.fr> X-Mailer: git-send-email 2.45.1 In-Reply-To: <20240711143540.25601-1-romain.garbage@inria.fr> References: <20240711143540.25601-1-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/parallel.scm (slurm) [inputs]: Add dependency. [arguments]: Update configure flags. Change-Id: I6544be5eb44980191d0788738ab960263c56c0ba --- gnu/packages/parallel.scm | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/gnu/packages/parallel.scm b/gnu/packages/parallel.scm index f173d1b75e..694968b727 100644 --- a/gnu/packages/parallel.scm +++ b/gnu/packages/parallel.scm @@ -229,6 +229,7 @@ (define-public slurm `(,hwloc-2 "lib") json-c linux-pam + openpmix munge numactl readline)) @@ -245,6 +246,9 @@ (define-public slurm (string-append "--with-json=" #$(this-package-input "json-c")) (string-append "--with-munge=" #$(this-package-input "munge")) + ;; Use PMIx bundled with Open MPI (this is required for Open MPI 5.x). + (string-append "--with-pmix=" #$(this-package-input "openpmix")) + ;; 32-bit support is marked as deprecated and needs to be ;; explicitly enabled. #$@(if (target-64bit?) '() '("--enable-deprecated")))