From patchwork Wed Jul 3 15:07:17 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Arun Isaac X-Patchwork-Id: 65878 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5574827BBEA; Wed, 3 Jul 2024 16:08:38 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-0.2 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SORTED_RECIPS,SPF_HELO_PASS, URIBL_BLOCKED autolearn=no autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id DA90327BBE2 for ; Wed, 3 Jul 2024 16:08:37 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1sP1ab-0006PE-E3; Wed, 03 Jul 2024 11:08:09 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sP1aZ-0006Mz-Fb for guix-patches@gnu.org; Wed, 03 Jul 2024 11:08:07 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1sP1aZ-0004By-5n; Wed, 03 Jul 2024 11:08:07 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1sP1aU-000468-GV; Wed, 03 Jul 2024 11:08:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69736] [PATCH v2 1/6] gnu: Add python-pypubsub. References: In-Reply-To: Resent-From: Arun Isaac Original-Sender: "Debbugs-submit" Resent-CC: arunisaac@systemreboot.net, jgart@dismail.de, lars@6xq.net, marius@gnu.org, me@bonfacemunyoki.com, sharlatanus@gmail.com, tanguy@bioneland.org, guix-patches@gnu.org Resent-Date: Wed, 03 Jul 2024 15:08:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69736 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69736@debbugs.gnu.org Cc: Arun Isaac , Arun Isaac , jgart , Lars-Dominik Braun , Marius Bakke , Munyoki Kilyungi , Sharlatan Hellseher , Tanguy Le Carrour X-Debbugs-Original-Xcc: Arun Isaac , jgart , Lars-Dominik Braun , Marius Bakke , Munyoki Kilyungi , Sharlatan Hellseher , Tanguy Le Carrour Received: via spool by 69736-submit@debbugs.gnu.org id=B69736.172001926715577 (code B ref 69736); Wed, 03 Jul 2024 15:08:02 +0000 Received: (at 69736) by debbugs.gnu.org; 3 Jul 2024 15:07:47 +0000 Received: from localhost ([127.0.0.1]:40073 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sP1aE-000436-LK for submit@debbugs.gnu.org; Wed, 03 Jul 2024 11:07:47 -0400 Received: from mugam.systemreboot.net ([139.59.75.54]:48670) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sP1aB-00042u-PV for 69736@debbugs.gnu.org; Wed, 03 Jul 2024 11:07:44 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=systemreboot.net; s=default; h=Content-Transfer-Encoding:MIME-Version: Message-ID:Date:Subject:Cc:To:From:Sender:Reply-To:Content-Type:Content-ID: Content-Description:Resent-Date:Resent-From:Resent-Sender:Resent-To:Resent-Cc :Resent-Message-ID:In-Reply-To:References:List-Id:List-Help:List-Unsubscribe: List-Subscribe:List-Post:List-Owner:List-Archive; bh=BFLsaT0SLPg4aMW4VrqZ8K4rGBxv/+sGo5iKxW6LCK4=; b=dWv6mkWoUQzFoHh8tat7UZEdZx wS5WPr5Kq26OlQfzEEwjEqg50S/FKhV0+qfT68DM0Q2Zsp7SBGa1kP4tJmRxPd8IWQW4afz/tUaBr 0IgUq7ssz62rLScYQaaDhX5+VvQSgKi85fuBQlme/fZH6N4GGusvJsoQOUO7mLjbf023Oyr+2yhty /B80W8+tyig/ErzT4HmgKrwO/eqYxZfbYzeHdsYQ+50c+rWNFxKn0OuApfa5bvC6jwPTrLbxxK+oA amFWjY3IQzv0B5KTgd/Qf/N+StTwbdpVg0wKO7AbWa0gqafe7gtqqIc+TE9zFx1lpnk0Q2jaw7gqa hNRfZlQg==; Received: from [192.168.2.1] (port=40016 helo=localhost.localdomain) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.96.1) (envelope-from ) id 1sP1WF-0005KA-0o; Wed, 03 Jul 2024 16:03:39 +0100 From: Arun Isaac Date: Wed, 3 Jul 2024 16:07:17 +0100 Message-ID: X-Mailer: git-send-email 2.45.2 MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-xyz.scm (python-pypubsub): New variable. Change-Id: Id8f06bd592b6273cff282aa628f05503a67519b0 --- gnu/packages/python-xyz.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) base-commit: 4b3a553ca5ba5ac190739309eb5f7aa8170cf2a8 diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 36f75b4b40..328750b38b 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -8214,6 +8214,32 @@ (define-public python-blinker interested parties to subscribe to events, or \"signals\".") (license license:expat))) +(define-public python-pypubsub + (package + (name "python-pypubsub") + (version "4.0.3") + ;; There is no source tarball on PyPI. + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/schollii/pypubsub") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "02j74w28wzmdvxkk8i561ywjgizjifq3hgcl080yj0rvkd3wivlb")))) + (build-system python-build-system) + (home-page "https://github.com/schollii/pypubsub") + (synopsis "Python publish-subscribe library") + (description "@code{python-pypubsub} provides a pure Python +publish-subscribe API to facilitate event-based or message-based architecture +in a single-process application. It is centered on the notion of a topic; +senders publish messages of a given topic, and listeners subscribe to messages +of a given topic, all inside the same process. The package also supports a +variety of advanced features that facilitate debugging and maintaining topics +and messages in larger desktop or server-based applications.") + (license license:bsd-2))) + (define-public pelican (package (name "pelican") From patchwork Wed Jul 3 15:07:18 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Arun Isaac X-Patchwork-Id: 65881 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 74CB027BBEA; Wed, 3 Jul 2024 16:08:48 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-0.2 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SORTED_RECIPS,SPF_HELO_PASS, URIBL_BLOCKED autolearn=no autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 1A3F827BBE2 for ; Wed, 3 Jul 2024 16:08:48 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1sP1aZ-0006NA-Rx; Wed, 03 Jul 2024 11:08:07 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sP1aY-0006M7-O4 for guix-patches@gnu.org; Wed, 03 Jul 2024 11:08:06 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1sP1aY-0004Bg-Ez; Wed, 03 Jul 2024 11:08:06 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1sP1aU-00046E-VC; Wed, 03 Jul 2024 11:08:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69736] [PATCH v2 2/6] gnu: Add python-addict. Resent-From: Arun Isaac Original-Sender: "Debbugs-submit" Resent-CC: arunisaac@systemreboot.net, jgart@dismail.de, lars@6xq.net, marius@gnu.org, me@bonfacemunyoki.com, sharlatanus@gmail.com, tanguy@bioneland.org, guix-patches@gnu.org Resent-Date: Wed, 03 Jul 2024 15:08:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69736 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69736@debbugs.gnu.org Cc: Arun Isaac , Arun Isaac , jgart , Lars-Dominik Braun , Marius Bakke , Munyoki Kilyungi , Sharlatan Hellseher , Tanguy Le Carrour X-Debbugs-Original-Xcc: Arun Isaac , jgart , Lars-Dominik Braun , Marius Bakke , Munyoki Kilyungi , Sharlatan Hellseher , Tanguy Le Carrour Received: via spool by 69736-submit@debbugs.gnu.org id=B69736.172001926815586 (code B ref 69736); Wed, 03 Jul 2024 15:08:02 +0000 Received: (at 69736) by debbugs.gnu.org; 3 Jul 2024 15:07:48 +0000 Received: from localhost ([127.0.0.1]:40075 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sP1aG-00043K-Ak for submit@debbugs.gnu.org; Wed, 03 Jul 2024 11:07:48 -0400 Received: from mugam.systemreboot.net ([139.59.75.54]:48672) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sP1aE-000433-51 for 69736@debbugs.gnu.org; Wed, 03 Jul 2024 11:07:46 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=systemreboot.net; s=default; h=Content-Transfer-Encoding:MIME-Version: References:In-Reply-To:Message-ID:Date:Subject:Cc:To:From:Sender:Reply-To: Content-Type:Content-ID:Content-Description:Resent-Date:Resent-From: Resent-Sender:Resent-To:Resent-Cc:Resent-Message-ID:List-Id:List-Help: List-Unsubscribe:List-Subscribe:List-Post:List-Owner:List-Archive; bh=k/rhs0LPKGki0TjCvOV9u8YRBkWrkohtvCHYoRo6de4=; b=CZCHAnW55nQMwHq92Ty2Pl5dhB 7G6vLbTdD8dlMIX7p5Lrifb/x1oqx/iCZuXWGlXenjzoLTwTSJJkxwQ6v2OsxRqKG5fsdid8H/LLo qSg7VgaopwX1a5526pqHD6NxH99Y346Z51piIay/d/ZnuW9wLBuhP3ANogfKH6gCahlO8MNHtCQMK Iy8o7mqXs8UT1F1yqDaseMNZ17wyqQw18yK6IVsTnE0JnlEdgyfKMKR6UWPp+s0LHNDiWppqV/Phs tEw4tuwRRRHh2TMLgJ+O7DJQDhTZPdaC7TnvSzGQh1hhUW8Ab5Ci5uUSyyHaChZwVrjS12BBWvyr5 CFb07PSw==; Received: from [192.168.2.1] (port=40016 helo=localhost.localdomain) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.96.1) (envelope-from ) id 1sP1WI-0005KA-11; Wed, 03 Jul 2024 16:03:42 +0100 From: Arun Isaac Date: Wed, 3 Jul 2024 16:07:18 +0100 Message-ID: <93f6c8615c12e117d1b30fc3b23bb6222188318d.1720019008.git.arunisaac@systemreboot.net> X-Mailer: git-send-email 2.45.2 In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-xyz.scm (python-addict): New variable. Change-Id: I1554d17495bf9337067422f2118f8b46e51abead --- gnu/packages/python-xyz.scm | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 328750b38b..06453709de 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -23841,6 +23841,23 @@ (define-public python-attrdict3 both as keys and as attributes.") (license license:expat))) +(define-public python-addict + (package + (name "python-addict") + (version "2.4.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "addict" version)) + (sha256 + (base32 + "1574sicy5ydx9pvva3lbx8qp56z9jbdwbj26aqgjhyh61q723cmk")))) + (build-system pyproject-build-system) + (home-page "https://github.com/mewwts/addict") + (synopsis "Python dictionary with attribute accessible values") + (description "@code{python-addict} provides dictionaries whose items can +be get and set using both attribute and item syntax.") + (license license:expat))) + (define-public python-attrs (package (name "python-attrs") From patchwork Wed Jul 3 15:07:19 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Arun Isaac X-Patchwork-Id: 65879 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 7EDC427BBEC; Wed, 3 Jul 2024 16:08:44 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-0.2 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SORTED_RECIPS,SPF_HELO_PASS, URIBL_BLOCKED autolearn=no autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 2629127BBE2 for ; Wed, 3 Jul 2024 16:08:44 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1sP1aa-0006NZ-FZ; Wed, 03 Jul 2024 11:08:08 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sP1aY-0006MC-V5 for guix-patches@gnu.org; Wed, 03 Jul 2024 11:08:06 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1sP1aY-0004Bi-M2; Wed, 03 Jul 2024 11:08:06 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1sP1aV-00046L-EM; Wed, 03 Jul 2024 11:08:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69736] [PATCH v2 3/6] gnu: Add python-prefixed. Resent-From: Arun Isaac Original-Sender: "Debbugs-submit" Resent-CC: arunisaac@systemreboot.net, jgart@dismail.de, lars@6xq.net, marius@gnu.org, me@bonfacemunyoki.com, sharlatanus@gmail.com, tanguy@bioneland.org, guix-patches@gnu.org Resent-Date: Wed, 03 Jul 2024 15:08:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69736 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69736@debbugs.gnu.org Cc: Arun Isaac , Arun Isaac , jgart , Lars-Dominik Braun , Marius Bakke , Munyoki Kilyungi , Sharlatan Hellseher , Tanguy Le Carrour X-Debbugs-Original-Xcc: Arun Isaac , jgart , Lars-Dominik Braun , Marius Bakke , Munyoki Kilyungi , Sharlatan Hellseher , Tanguy Le Carrour Received: via spool by 69736-submit@debbugs.gnu.org id=B69736.172001927215649 (code B ref 69736); Wed, 03 Jul 2024 15:08:03 +0000 Received: (at 69736) by debbugs.gnu.org; 3 Jul 2024 15:07:52 +0000 Received: from localhost ([127.0.0.1]:40078 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sP1aJ-000447-Km for submit@debbugs.gnu.org; Wed, 03 Jul 2024 11:07:51 -0400 Received: from mugam.systemreboot.net ([139.59.75.54]:48678) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sP1aH-00043J-3m for 69736@debbugs.gnu.org; Wed, 03 Jul 2024 11:07:49 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=systemreboot.net; s=default; h=Content-Transfer-Encoding:MIME-Version: References:In-Reply-To:Message-ID:Date:Subject:Cc:To:From:Sender:Reply-To: Content-Type:Content-ID:Content-Description:Resent-Date:Resent-From: Resent-Sender:Resent-To:Resent-Cc:Resent-Message-ID:List-Id:List-Help: List-Unsubscribe:List-Subscribe:List-Post:List-Owner:List-Archive; bh=a44IJ/SaanWw12234wsGg4uM/+DdgrYamURwHgbO71I=; b=GY15T5VJcGH8T69cRUBbGCXqdc 0/UzGceG3DA7xx6T7EeDDa56GVm/SkrMZ9+fTZkxPobDBGADdSXHVxlaSAVrrnMQb1WNy7n/QVthm G4MeoQvANUnkSI0AINsXbjh4c4NRq56hrN0UIzrlXlksh4YCqk8fY6S63dvRKQJzBTs7Misn96j8w Bb/+QvX9mVkZxy87neQ1SvZzFkXqP5WAO2uvOBVztLXKWYCBw80F+RYmYyirkyGhI72SuILKzktHQ gqRmzrpvDgNUBbGJEqdp8/XGVkXOCvAWGU4MOj6fSxUlQikxLkltM7LtiTGueX/sLP8wCiTs2bRaQ 5H/7DfQA==; Received: from [192.168.2.1] (port=40016 helo=localhost.localdomain) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.96.1) (envelope-from ) id 1sP1WL-0005KA-1E; Wed, 03 Jul 2024 16:03:45 +0100 From: Arun Isaac Date: Wed, 3 Jul 2024 16:07:19 +0100 Message-ID: X-Mailer: git-send-email 2.45.2 In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-xyz.scm (python-prefixed): New variable. Change-Id: I1398953059feb740dfdd9abe12bd0aa7abe3714e --- gnu/packages/python-xyz.scm | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 06453709de..993e0e0f6b 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -33685,6 +33685,24 @@ (define-public python-quicktions is the cythonized version of @code{fractions.Fraction}.") (license license:psfl))) +(define-public python-prefixed + (package + (name "python-prefixed") + (version "0.7.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "prefixed" version)) + (sha256 + (base32 + "1sdvxwy4kvcxvnq1nx70j1ccx5ga6wdb478vqd5azf1fc1gd2m0b")))) + (build-system pyproject-build-system) + (home-page "https://github.com/Rockhopper-Technologies/prefixed") + (synopsis "Prefixed alternative numeric library") + (description "@code{python-prefixed} provides an alternative +implementation of the built-in float which supports formatted output with +SI (decimal) and IEC (binary) prefixes.") + (license license:mpl2.0))) + (define-public python-pathvalidate (package (name "python-pathvalidate") From patchwork Wed Jul 3 15:07:20 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Arun Isaac X-Patchwork-Id: 65877 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 7FB4227BBEA; Wed, 3 Jul 2024 16:08:36 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-0.2 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SORTED_RECIPS,SPF_HELO_PASS, URIBL_BLOCKED autolearn=no autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 1B6EE27BBE2 for ; Wed, 3 Jul 2024 16:08:36 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1sP1af-0006V8-Vk; Wed, 03 Jul 2024 11:08:14 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sP1ae-0006TU-CC for guix-patches@gnu.org; Wed, 03 Jul 2024 11:08:12 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1sP1ad-0004Ir-Vi; Wed, 03 Jul 2024 11:08:12 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1sP1aV-00046R-Ru; Wed, 03 Jul 2024 11:08:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69736] [PATCH v2 4/6] gnu: Add python-enlighten. Resent-From: Arun Isaac Original-Sender: "Debbugs-submit" Resent-CC: arunisaac@systemreboot.net, jgart@dismail.de, lars@6xq.net, marius@gnu.org, me@bonfacemunyoki.com, sharlatanus@gmail.com, tanguy@bioneland.org, guix-patches@gnu.org Resent-Date: Wed, 03 Jul 2024 15:08:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69736 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69736@debbugs.gnu.org Cc: Arun Isaac , Arun Isaac , jgart , Lars-Dominik Braun , Marius Bakke , Munyoki Kilyungi , Sharlatan Hellseher , Tanguy Le Carrour X-Debbugs-Original-Xcc: Arun Isaac , jgart , Lars-Dominik Braun , Marius Bakke , Munyoki Kilyungi , Sharlatan Hellseher , Tanguy Le Carrour Received: via spool by 69736-submit@debbugs.gnu.org id=B69736.172001927515682 (code B ref 69736); Wed, 03 Jul 2024 15:08:03 +0000 Received: (at 69736) by debbugs.gnu.org; 3 Jul 2024 15:07:55 +0000 Received: from localhost ([127.0.0.1]:40081 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sP1aM-00044s-VG for submit@debbugs.gnu.org; Wed, 03 Jul 2024 11:07:55 -0400 Received: from mugam.systemreboot.net ([139.59.75.54]:45692) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sP1aL-000446-RZ for 69736@debbugs.gnu.org; Wed, 03 Jul 2024 11:07:54 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=systemreboot.net; s=default; h=Content-Transfer-Encoding:MIME-Version: References:In-Reply-To:Message-ID:Date:Subject:Cc:To:From:Sender:Reply-To: Content-Type:Content-ID:Content-Description:Resent-Date:Resent-From: Resent-Sender:Resent-To:Resent-Cc:Resent-Message-ID:List-Id:List-Help: List-Unsubscribe:List-Subscribe:List-Post:List-Owner:List-Archive; bh=HUIlQGqPT2T6uuWc79DYO5p6YOvC5EEXKDrnKjQDZ7g=; b=C002VRVt9Eg3JfQ/a754khWNeN 9/gXkDft3sUHheDBse8jbkxSiwOjrVGHNrpiYvpUt3sPWtTqbyD9iabZytLNVoQWDqLXHlGvVJriB Dd3nH5QDyJZsf087YPjSKDcbAZrwEqlu+6GFYCA8onjkQvT6fHGhLkII1GEVZwvY4Fx+ONCxe8kER gRK7gRYgZGGpW9ycKreXJlcHhgAsv/2r+V60S9Bd2DWfwL6LHAypIuiSghUE4JX8hXqer1AUMGbdf N8xnrLZL3vVBb9B36fSmkQS1s65OcoZIZHGSheL9k3Ayr3Ua5Eqh227JJ9vid33GI/f/mVtJYxD1H TQfe2NsA==; Received: from [192.168.2.1] (port=40016 helo=localhost.localdomain) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.96.1) (envelope-from ) id 1sP1WO-0005KA-1O; Wed, 03 Jul 2024 16:03:49 +0100 From: Arun Isaac Date: Wed, 3 Jul 2024 16:07:20 +0100 Message-ID: <7cf7aff610bfbcfeac9dfc4374fc380962b7916e.1720019008.git.arunisaac@systemreboot.net> X-Mailer: git-send-email 2.45.2 In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-xyz.scm (python-enlighten): New variable. Change-Id: Ifcc1e71cf012eb3b7e2c0ceef7d288cea9fa6a91 --- gnu/packages/python-xyz.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 993e0e0f6b..8982813479 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -18639,6 +18639,28 @@ (define-public python-progressbar33 ;; Either or both of these licenses may be selected. (license (list license:lgpl2.1+ license:bsd-3)))) +(define-public python-enlighten + (package + (name "python-enlighten") + (version "1.12.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "enlighten" version)) + (sha256 + (base32 + "0psvglhi0c7d7pdk9rfb8scnv3xbq2fz78619x2mxvz094mxkwvm")))) + (build-system pyproject-build-system) + (propagated-inputs + (list python-blessed python-prefixed)) + (home-page "https://github.com/Rockhopper-Technologies/enlighten") + (synopsis "Console progress bar library") + (description "@code{python-enlighten} is a console progress bar library +for Python. The main advantage of Enlighten is that it allows writing to +stdout and stderr without any redirection or additional code---just print or +log as you normally would. Enlighten also includes experimental support for +Jupyter Notebooks.") + (license license:mpl2.0))) + (define-public python-colorama (package (name "python-colorama") From patchwork Wed Jul 3 15:07:21 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Arun Isaac X-Patchwork-Id: 65880 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id B733427BBE2; Wed, 3 Jul 2024 16:08:44 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 3264F27BBE9 for ; Wed, 3 Jul 2024 16:08:44 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1sP1aY-0006M9-Rr; Wed, 03 Jul 2024 11:08:06 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sP1aW-0006LN-UW for guix-patches@gnu.org; Wed, 03 Jul 2024 11:08:04 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1sP1aW-0004B5-Kq for guix-patches@gnu.org; Wed, 03 Jul 2024 11:08:04 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1sP1aW-00046Y-9L; Wed, 03 Jul 2024 11:08:04 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69736] [PATCH v2 5/6] gnu: Add python-cwltool. Resent-From: Arun Isaac Original-Sender: "Debbugs-submit" Resent-CC: arunisaac@systemreboot.net, jgart@dismail.de, guix-patches@gnu.org Resent-Date: Wed, 03 Jul 2024 15:08:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69736 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69736@debbugs.gnu.org Cc: Arun Isaac , Arun Isaac , jgart X-Debbugs-Original-Xcc: Arun Isaac , jgart Received: via spool by 69736-submit@debbugs.gnu.org id=B69736.172001927715729 (code B ref 69736); Wed, 03 Jul 2024 15:08:04 +0000 Received: (at 69736) by debbugs.gnu.org; 3 Jul 2024 15:07:57 +0000 Received: from localhost ([127.0.0.1]:40084 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sP1aP-00045X-8h for submit@debbugs.gnu.org; Wed, 03 Jul 2024 11:07:57 -0400 Received: from mugam.systemreboot.net ([139.59.75.54]:45696) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sP1aN-00044m-5k for 69736@debbugs.gnu.org; Wed, 03 Jul 2024 11:07:55 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=systemreboot.net; s=default; h=Content-Transfer-Encoding:MIME-Version: References:In-Reply-To:Message-ID:Date:Subject:Cc:To:From:Sender:Reply-To: Content-Type:Content-ID:Content-Description:Resent-Date:Resent-From: Resent-Sender:Resent-To:Resent-Cc:Resent-Message-ID:List-Id:List-Help: List-Unsubscribe:List-Subscribe:List-Post:List-Owner:List-Archive; bh=UDDNq+3owfGvIL9kcuAduBPp2W7/Lzitgu8ZcQnW57E=; b=BDO8fp1ntRFIyYMaPXCWgs65Pb FnzOiWtc4rHsM+/zQaFTPswZuRMGTaEKinLGxM/qtlFPSPTHQeXZ7A1ED76lgE6/aGXFzdaQq5vem Ah8w6Wuw30JjQTgbSR9YK/HE24Q6l3SXhpcbN/EuEhdDB+DHLxJo4ctQc7CSyzBJC/Jud45siM/Hb mKH3mwlxJAZ6PU2qbiaOzT3Aa5YKjQATSIiWnPEP7T8QOXi027bt2xXZvUiKamqhdqWy8Fc0OB9vE rYcVF5/PkgxdEnFhhR4cUzkeq7OcNeqvEWDEe6VcYvDgk7ZwINhAIZsXDoLB+VcGKnY9ba2I9jKs9 lhEekV2Q==; Received: from [192.168.2.1] (port=40016 helo=localhost.localdomain) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.96.1) (envelope-from ) id 1sP1WR-0005KA-1n; Wed, 03 Jul 2024 16:03:52 +0100 From: Arun Isaac Date: Wed, 3 Jul 2024 16:07:21 +0100 Message-ID: X-Mailer: git-send-email 2.45.2 In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (python-cwltool): New variable. Change-Id: Ic374d4c02b69c4e6c923d1cc17e629d4a3a6221c --- gnu/packages/bioinformatics.scm | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 063017a8aa..b83e18ea78 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5816,6 +5816,18 @@ (define-public cwltool CWL descriptions.") (license license:asl2.0))) +;; python-toil tightly integrates with cwltool using it as a library. So, +;; create a library version of cwltool where inputs become propagated inputs. +(define-public python-cwltool + (package + (inherit cwltool) + (name "python-cwltool") + (inputs + (list node)) + (propagated-inputs + (modify-inputs (package-inputs cwltool) + (delete "node"))))) + (define-public python-dendropy (package (name "python-dendropy") From patchwork Wed Jul 3 15:07:22 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Arun Isaac X-Patchwork-Id: 65876 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 06D4427BBE9; Wed, 3 Jul 2024 16:08:25 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 7BAD527BBE2 for ; Wed, 3 Jul 2024 16:08:23 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1sP1aZ-0006ML-3l; Wed, 03 Jul 2024 11:08:07 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sP1aX-0006LR-1d for guix-patches@gnu.org; Wed, 03 Jul 2024 11:08:05 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1sP1aW-0004B6-N9 for guix-patches@gnu.org; Wed, 03 Jul 2024 11:08:04 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1sP1aW-00046k-QJ; Wed, 03 Jul 2024 11:08:04 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69736] [PATCH v2 6/6] gnu: Add python-toil. Resent-From: Arun Isaac Original-Sender: "Debbugs-submit" Resent-CC: arunisaac@systemreboot.net, jgart@dismail.de, guix-patches@gnu.org Resent-Date: Wed, 03 Jul 2024 15:08:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69736 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69736@debbugs.gnu.org Cc: Arun Isaac , Arun Isaac , jgart X-Debbugs-Original-Xcc: Arun Isaac , jgart Received: via spool by 69736-submit@debbugs.gnu.org id=B69736.172001928115744 (code B ref 69736); Wed, 03 Jul 2024 15:08:04 +0000 Received: (at 69736) by debbugs.gnu.org; 3 Jul 2024 15:08:01 +0000 Received: from localhost ([127.0.0.1]:40087 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sP1aS-00045r-MS for submit@debbugs.gnu.org; Wed, 03 Jul 2024 11:08:01 -0400 Received: from mugam.systemreboot.net ([139.59.75.54]:45704) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sP1aQ-00045c-H5 for 69736@debbugs.gnu.org; Wed, 03 Jul 2024 11:07:59 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=systemreboot.net; s=default; h=Content-Transfer-Encoding:MIME-Version: References:In-Reply-To:Message-ID:Date:Subject:Cc:To:From:Sender:Reply-To: Content-Type:Content-ID:Content-Description:Resent-Date:Resent-From: Resent-Sender:Resent-To:Resent-Cc:Resent-Message-ID:List-Id:List-Help: List-Unsubscribe:List-Subscribe:List-Post:List-Owner:List-Archive; bh=7eZBYt0f0Y2Fb4QO4SUVKmPTtCUNtZXNfJiyVhC2/RQ=; b=AjA7hoD5AxxqL27RnlAqbGLyGB pRmeUNT/C1BmP8DnwUWbD1UqWcK1vf3guZSSp+AOQw1+6VZ5OS00qj/Y0dLmHKHYNIvTgSbGoSnau Owop0aOaSMsznnWJeyIZBjPwVGJZirK/1WHTTLgbMyjUSGdAxeKQDANWo56qmaErkWy0kjmXYCnHL OSoARWlZ0liUndVndF6cIRhaMwThQz8dXvx1uE2GAXvtVvdn0/X+/a60pTRFdMDnabIJObqWMDowl dUCHHO39K9DdGxAZNlnNGyu0UQp5YZovyRy6LI+XX0yZfvj2x3cpUulJrohhpmPTGk9twRA33N3zh /yAc6+fQ==; Received: from [192.168.2.1] (port=40016 helo=localhost.localdomain) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.96.1) (envelope-from ) id 1sP1WU-0005KA-1x; Wed, 03 Jul 2024 16:03:55 +0100 From: Arun Isaac Date: Wed, 3 Jul 2024 16:07:22 +0100 Message-ID: X-Mailer: git-send-email 2.45.2 In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (python-toil): New variable. Change-Id: I1a6c071eaa9169c1e0cd7c74d1117490ee7bf267 --- gnu/packages/bioinformatics.scm | 62 +++++++++++++++++++++++++++++++++ 1 file changed, 62 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b83e18ea78..6d15b1a226 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -88,6 +88,7 @@ (define-module (gnu packages bioinformatics) #:use-module (gnu packages databases) #:use-module (gnu packages datastructures) #:use-module (gnu packages dlang) + #:use-module (gnu packages docker) #:use-module (gnu packages file) #:use-module (gnu packages flex) #:use-module (gnu packages gawk) @@ -5828,6 +5829,67 @@ (define-public python-cwltool (modify-inputs (package-inputs cwltool) (delete "node"))))) +(define-public python-toil + (package + (name "python-toil") + (version "6.1.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "toil" version)) + (sha256 + (base32 + "0hwaihnncsfxw0sf3iigvgw6nylrb56lpk8qjadkgazr98dsp4ha")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'disable-optional-features + (lambda _ + (substitute* "requirements-cwl.txt" + ;; Loosen version restrictions on ruamel.yaml. + (("ruamel.yaml[<>=.,[:digit:]]*\n") "ruamel.yaml\n") + ;; Remove optional dependency on galaxy-util and + ;; galaxy-tool-util. TODO: Package these and restore these + ;; dependencies. + (("galaxy-util[^\n]*") "") + (("galaxy-tool-util[^\n]*") "")) + ;; Disable optional wdl, wes and mesos features. We don't yet + ;; have dependencies packaged for them. TODO: Package these + ;; dependencies and enable these features. + (substitute* "setup.py" + (("\"wdl\",") "") + (("toil-cwl-runner = toil.cwl.cwltoil:main \\[cwl\\]") + "toil-cwl-runner = toil.cwl.cwltoil:main") + (("'toil-wdl-runner = toil.wdl.wdltoil:main \\[wdl\\]',") "") + (("'toil-wes-cwl-runner = toil.server.cli.wes_cwl_runner:main \\[server\\]',") "") + (("'_toil_mesos_executor = toil.batchSystems.mesos.executor:main \\[mesos\\]',") ""))))))) + (propagated-inputs + (list python-addict + python-cachecontrol + python-configargparse + python-cwltool + python-dateutil + python-dill + python-docker + python-enlighten + python-psutil + python-pypubsub + python-pytz + python-pyyaml + python-requests + python-ruamel.yaml + python-typing-extensions-4.10 + python-urllib3)) + (home-page "https://github.com/DataBiosphere/toil") + (synopsis "Scalable, efficient and cross-platform workflow engine") + (description "Toil is a scalable, efficient, cross-platform pipeline +management system, written entirely in Python, and designed around the +principles of functional programming.") + (license (list license:asl2.0 ;; main license + license:expat)))) ;; src/toil/batchSystems/lsf.py and + ;; src/toil/batchSystems/lsfHelper.py + (define-public python-dendropy (package (name "python-dendropy")