From patchwork Tue Apr 23 11:25:42 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 63309 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 1FA0027BBEA; Tue, 23 Apr 2024 12:28:23 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 09F7627BBEB for ; Tue, 23 Apr 2024 12:28:22 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rzEJW-0002gG-1u; Tue, 23 Apr 2024 07:27:54 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rzEJU-0002fw-22 for guix-patches@gnu.org; Tue, 23 Apr 2024 07:27:52 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rzEJT-00063p-QI for guix-patches@gnu.org; Tue, 23 Apr 2024 07:27:51 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rzEJj-00011B-Bf; Tue, 23 Apr 2024 07:28:07 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#70535] [PATCH 1/5] gnu: Add r-lpsolveapi. References: <3c33811b4b1e44449256d3ffc64f33d8@mdc-berlin.de> In-Reply-To: <3c33811b4b1e44449256d3ffc64f33d8@mdc-berlin.de> Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Tue, 23 Apr 2024 11:28:06 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 70535 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <70535@debbugs.gnu.org> Cc: Ricardo Wurmus X-Debbugs-Original-Xcc: Ricardo Wurmus Received: via spool by 70535-submit@debbugs.gnu.org id=B70535.17138716443420 (code B ref 70535); Tue, 23 Apr 2024 11:28:06 +0000 Received: (at 70535) by debbugs.gnu.org; 23 Apr 2024 11:27:24 +0000 Received: from localhost ([127.0.0.1]:51576 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzEIy-0000sM-5C for submit@debbugs.gnu.org; Tue, 23 Apr 2024 07:27:23 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:49815) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzEIt-0000qJ-Ro for 70535@debbugs.gnu.org; Tue, 23 Apr 2024 07:27:17 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1713871613; x=1715686014; bh=aoXeilcEvt6qeOP kzWazYs6bj39pg71iEOoYkjHJQes=; b=UQ3rHOswRxGFFDaGYYtdBSU4HfcdmUz z0g+hZY/VdDUTrVXiIFRpkiXrbDLcsHq96/kyVAHUMTgjTi6L74b4uOuiOQzU5fJ KjS2l3Z1s2IGvHtTrjxZAQCAfmJEep0cJJvMVfEHj6X5xB04Lvqee8VcFuy+n09S wAj9SF0gHTCg= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 56ABEA0202 for <70535@debbugs.gnu.org>; Tue, 23 Apr 2024 13:26:53 +0200 (CEST) Received: from cl-akalin11.mdc-berlin.net (141.80.219.20) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.4; Tue, 23 Apr 2024 13:26:52 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Tue, 23 Apr 2024 13:25:42 +0200 Message-ID: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 X-Originating-IP: [141.80.219.20] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-AS-Result: No-10--8.918400-5.000000 X-TMASE-MatchedRID: GQw6Xh/XS6UEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhTny lHiK0ou/yAw496wm2KzABo6AR1sb2oqKGmXzWdcHb3Pl2Oyrc7BrcVVB7l3jO8+b4dvynxi2+3D GARmE5RC1HI6KvjIehQvhWKRy72a8588TYTFT/53k+QJ4zu017ZvF74h5fDR7/hDZniJZcAJjc9 9KY0Ed8qODSWu0oxbKC1uKFU3yK1M9MFabxtp+HdvIAMT/07Oi9VRkPJa+sq6+IjsEEOIzYr8YI qZgkday+GpeURvQevW7PKJzRG3e3qRKgkaGjSSt X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--8.918400-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-SNTS-SMTP: EC4C124042222459477AEB7232ECF46E2BCEF2618DCF0A56DA950CFD307820BD2000:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-lpsolveapi): New variable. Change-Id: I6a93603a5814df0eb43a214b5c2a0f4865901bcd --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) base-commit: 2d19e505f6f9f82aebc9ba8c74ba223818acd9bc diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ee0aac7f7a..4b6ece1eb1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8191,6 +8191,26 @@ (define-public r-lpsolve transportation problems.") (license license:lgpl2.0))) +(define-public r-lpsolveapi + (package + (name "r-lpsolveapi") + (version "5.5.2.0-17.11") + (source + (origin + (method url-fetch) + (uri (cran-uri "lpSolveAPI" version)) + (sha256 + (base32 "191zjgyap3kcsvh8fygqqyr9p0agbzm160fzynnpaxf19yp6r3dh")))) + (properties `((upstream-name . "lpSolveAPI"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=lpSolveAPI") + (synopsis "Interface to lp_solve") + (description + "The lpSolveAPI package provides an R interface to lp_solve, a @acronym{MILP, +Mixed Integer Linear Programming}, solver with support for pure linear, (mixed) +integer/binary, semi-continuous and @acronym{SOS, special ordered sets} models.") + (license license:lgpl2.0))) + (define-public r-limsolve (package (name "r-limsolve") From patchwork Tue Apr 23 11:25:43 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 63308 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 91F7427BBE9; Tue, 23 Apr 2024 12:28:14 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 49A0327BBE2 for ; Tue, 23 Apr 2024 12:28:13 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rzEJa-0002hj-9C; Tue, 23 Apr 2024 07:27:58 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rzEJY-0002hZ-IN for guix-patches@gnu.org; Tue, 23 Apr 2024 07:27:56 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rzEJX-00064m-UK for guix-patches@gnu.org; Tue, 23 Apr 2024 07:27:55 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rzEJn-00012C-Vz; Tue, 23 Apr 2024 07:28:12 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#70535] [PATCH 2/5] gnu: Add r-roi. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Tue, 23 Apr 2024 11:28:11 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 70535 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <70535@debbugs.gnu.org> Cc: Ricardo Wurmus X-Debbugs-Original-Xcc: Ricardo Wurmus Received: via spool by 70535-submit@debbugs.gnu.org id=B70535.17138716493482 (code B ref 70535); Tue, 23 Apr 2024 11:28:11 +0000 Received: (at 70535) by debbugs.gnu.org; 23 Apr 2024 11:27:29 +0000 Received: from localhost ([127.0.0.1]:51578 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzEJ1-0000t7-LI for submit@debbugs.gnu.org; Tue, 23 Apr 2024 07:27:28 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:58229) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzEIu-0000qP-C0 for 70535@debbugs.gnu.org; Tue, 23 Apr 2024 07:27:17 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1713871613; x=1715686014; bh=0JUcW75NmMLvuKshEmKNwn50y+N/31awcSEwps1LhO8=; b=iGKtOpS1jzQd zxPiuCjzwlNOgZw/VACrxH/LtKs4YLJ+2FwBP3T9riqc4a4ASL9V1pO3FhVBhENH rzcnQqj/VE8SQ58xn2PelC3HhpcUFxwhO7v5X8uTxHjme6cujqbbfYMBtn9vdkDO 2MsWPxE4sEK0DefWfVHX7/R8RLuyv8U= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id CCCF6A02B6 for <70535@debbugs.gnu.org>; Tue, 23 Apr 2024 13:26:53 +0200 (CEST) Received: from cl-akalin11.mdc-berlin.net (141.80.219.20) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.4; Tue, 23 Apr 2024 13:26:53 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Tue, 23 Apr 2024 13:25:43 +0200 Message-ID: X-Mailer: git-send-email 2.41.0 In-Reply-To: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@mdc-berlin.de> References: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.219.20] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-AS-Result: No-10--1.594400-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcMEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhdqK Kei3fK/BuP2uihwIy0iu5Y9WGrdMHhV9IJL+D0rbju2XlcEx9HRI3RrBc0CPBXPRq1nQ3qMAKWZ HUg8RxwZiQ8UF7auKdIWUB/KD7fQo8CsHqdsq1hfYeXOEzfM22XiBfPQ+YIRHv9rSd36EgULQoH BWslVIiLKzgxCMDbfQleisCNgs6EF7Eoj104jLm2hrElF6nP31bzPMZzHjmt5g4XQBx7jkzJT4k QUVO9eHmwaw7KkwtOEphMAr6ZaoMfXwhvLZYSPUx6Xh3Vy4y2+O91s7FwLn8xC2a7GIAOqG8ody TXpQo3UZHwBcdw5+Mg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.594400-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-SNTS-SMTP: D57FCE6495BDC35492259D8C71DE95D451305F23C66EA45EA9B0B83E5E00C4DF2000:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-roi): New variable. Change-Id: I58cbb4be238a5cc9f861ee9dafea03a133f7c0f1 --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4b6ece1eb1..53a964e60a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -12211,6 +12211,26 @@ (define-public r-randomizr experimental designs and random samples for common sampling designs.") (license license:expat))) +(define-public r-roi + (package + (name "r-roi") + (version "1.0-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ROI" version)) + (sha256 + (base32 "05hnj9fskfm2klz7zv97lb0r60akjq4a1cay8p62whpi0hri9zyl")))) + (properties `((upstream-name . "ROI"))) + (build-system r-build-system) + (propagated-inputs (list r-checkmate r-registry r-slam)) + (home-page "https://roi.r-forge.r-project.org/") + (synopsis "R optimization infrastructure") + (description + "The @acronym{ROI, R Optimization Infrastructure} is a framework for handling +optimization problems in R.") + (license license:gpl3))) + (define-public r-roptim (package (name "r-roptim") From patchwork Tue Apr 23 11:25:44 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 63310 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5C9FB27BBEA; Tue, 23 Apr 2024 12:28:23 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 755CD27BBE9 for ; Tue, 23 Apr 2024 12:28:21 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rzEJe-0002ju-HY; Tue, 23 Apr 2024 07:28:02 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rzEJd-0002jO-4N for guix-patches@gnu.org; Tue, 23 Apr 2024 07:28:01 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rzEJc-00065t-SB for guix-patches@gnu.org; Tue, 23 Apr 2024 07:28:00 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rzEJt-00013I-2Z; Tue, 23 Apr 2024 07:28:17 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#70535] [PATCH 3/5] gnu: Add r-roi-plugin-lpsolve. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Tue, 23 Apr 2024 11:28:16 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 70535 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <70535@debbugs.gnu.org> Cc: Ricardo Wurmus X-Debbugs-Original-Xcc: Ricardo Wurmus Received: via spool by 70535-submit@debbugs.gnu.org id=B70535.17138716623619 (code B ref 70535); Tue, 23 Apr 2024 11:28:16 +0000 Received: (at 70535) by debbugs.gnu.org; 23 Apr 2024 11:27:42 +0000 Received: from localhost ([127.0.0.1]:51582 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzEJK-0000wI-68 for submit@debbugs.gnu.org; Tue, 23 Apr 2024 07:27:42 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:41669) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzEIu-0000qU-S9 for 70535@debbugs.gnu.org; Tue, 23 Apr 2024 07:27:20 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1713871614; x=1715686015; bh=WlcUp6vLLJkjY0Ncdf0i/dDcBMhb5uuYc2HgYihyAKg=; b=Vi+YB8XNIhRL ZRektPzJjxIudUiY68qM6OdPSv/5WcpMjoCTKgz24fBtnaOsy6+9aY63XFUOyvj1 2t2m8a6/yG9TButfNW13250wh2ZSy7R+h7hQQKWPEgV5wESVDdgfJMFVPaD/OfRp zh2dbrwi0XD8MeD6el238m8UqqeSooM= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 7098FA02B9 for <70535@debbugs.gnu.org>; Tue, 23 Apr 2024 13:26:54 +0200 (CEST) Received: from cl-akalin11.mdc-berlin.net (141.80.219.20) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.4; Tue, 23 Apr 2024 13:26:53 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Tue, 23 Apr 2024 13:25:44 +0200 Message-ID: <6e334ad253559aa7d65529fca177c4aa7e01b53f.1713871546.git.madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.41.0 In-Reply-To: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@mdc-berlin.de> References: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.219.20] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-AS-Result: No-10--3.075400-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcMEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhdqK Kei3fK/BuP2uihwIy0iu5Y9WGrdMHhV9IJL+D0rbju2XlcEx9HRj5v3GQstxVQLbwVZWOSEXgwc XAXhG85fmyKOv7+2sE8q80Y2YbRJTr54JIx46I6QKjLWrARtscyaSuBfcJyImVGpM/94x8OywHX nHVkAsxUbR9GX4qnwRs+seg3+tFV6PJinDlR90er33NopZlLJVNpMKhNMrOKhq8q0rcNoVzIFsc MwAjCz4l2SIFRzaaBlB/YaCPpWnV2v7tbktQlBGWSgmpbFZnEI1kD2KtSTmq2Pbt5Stv2K5/Ox0 TU9Ci5I= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.075400-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-SNTS-SMTP: B7CCDCA1D9B4592084BB4C7C940C366CC9E53BAF01F31175FD7C6B9A120EA4FB2000:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-roi-plugin-lpsolve): New variable. Change-Id: Ia3f47ba0b414ecd9273c101977ec8d14916fa656 --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 53a964e60a..1fdd5eb685 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1680,6 +1680,26 @@ (define-public r-rocit metrics.") (license license:gpl3))) +(define-public r-roi-plugin-lpsolve + (package + (name "r-roi-plugin-lpsolve") + (version "1.0-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "ROI.plugin.lpsolve" version)) + (sha256 + (base32 "0xgg1fzq5sba3yvvrci3iw97p31walpnhv4zwnd39gw8v5z6f9dj")))) + (properties `((upstream-name . "ROI.plugin.lpsolve"))) + (build-system r-build-system) + (propagated-inputs (list r-lpsolveapi r-roi)) + (home-page "https://roigrp.gitlab.io") + (synopsis "Plugin of lp_solve for the R optimization infrastructure") + (description + "This package enhances the @acronym{ROI, R Optimization Infrastructure} with +the lp_solve solver.") + (license license:gpl3))) + (define-public r-rorcid (package (name "r-rorcid") From patchwork Tue Apr 23 11:25:45 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 63312 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 19D6D27BBEA; Tue, 23 Apr 2024 12:28:52 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id EFE8827BBE9 for ; Tue, 23 Apr 2024 12:28:50 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rzEJg-0002kp-Lx; Tue, 23 Apr 2024 07:28:04 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rzEJf-0002kF-L5 for guix-patches@gnu.org; Tue, 23 Apr 2024 07:28:03 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rzEJf-00066S-Ch for guix-patches@gnu.org; Tue, 23 Apr 2024 07:28:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rzEJv-00013o-PG; Tue, 23 Apr 2024 07:28:19 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#70535] [PATCH 4/5] gnu: Add r-detectseparation. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Tue, 23 Apr 2024 11:28:19 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 70535 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <70535@debbugs.gnu.org> Cc: Ricardo Wurmus X-Debbugs-Original-Xcc: Ricardo Wurmus Received: via spool by 70535-submit@debbugs.gnu.org id=B70535.17138716633625 (code B ref 70535); Tue, 23 Apr 2024 11:28:19 +0000 Received: (at 70535) by debbugs.gnu.org; 23 Apr 2024 11:27:43 +0000 Received: from localhost ([127.0.0.1]:51584 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzEJK-0000wL-Ok for submit@debbugs.gnu.org; Tue, 23 Apr 2024 07:27:43 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:56867) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzEIv-0000qe-D0 for 70535@debbugs.gnu.org; Tue, 23 Apr 2024 07:27:20 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1713871615; x=1715686016; bh=Lo/RyXMUbEIYM0awuqVC3F65W6lrPySvsgSJOmkMek8=; b=RGNA4Ruw91UA 2NW5TGLuE5TwG2WCaxNC9zVp2sVVFHU8zorTzK8bmkmPJSHjIn79GL5ZLDddovT+ +kekBnLinEN0q0v+6BevEyuJnzwhhXidQycH5L89i4vDDELFlb6heX4r9PFSxjQB vD8eecq22A3hotalZZvp66rma9PAwnU= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id EEB3CA02C9 for <70535@debbugs.gnu.org>; Tue, 23 Apr 2024 13:26:54 +0200 (CEST) Received: from cl-akalin11.mdc-berlin.net (141.80.219.20) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.4; Tue, 23 Apr 2024 13:26:53 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Tue, 23 Apr 2024 13:25:45 +0200 Message-ID: <4fb130e4a11b7a2214afa52b45b0b49635d00a36.1713871546.git.madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.41.0 In-Reply-To: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@mdc-berlin.de> References: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.219.20] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-AS-Result: No-10--3.449500-5.000000 X-TMASE-MatchedRID: ZAkTtSyZ7B4EZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhQMR 0wfnN/Lq2yihqMEbWTDABo6AR1sb2oqKGmXzWdcHb3Pl2Oyrc7A4bHpbh2+3eCSt1u56pOfA+3D GARmE5RAViCkeS2UcEf0Qkc+/cCwwF2vEP2ByfJuE/kebVwTpbFYSmaIHbAjbcon4ddel/27wkp wB/BfrWW9xdTxMGFFXPWxE82T8ZpMed+OWg+8YOUn1qfQ6TByeOu8NnwOh1wBVzqjGDXmIZhEuO qgkm3/1uSW68VCdRGSiWLhmiI4dP+5bqUkQKW6WzEVb/qxkUfiUHflxPUI1DgwLGkcJS03dbKnd vu1tnhrbVC2Cg5XgTtrJh17OAJPbKXwiCRle5gsZkzzdJQAGR6PTsZi8OLeowjf+Kt6YkLl0CfP GRz/A475iX+rqLWae/WY7WJgskOpPhxsEgoy4er7rweoAIK8o X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.449500-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-SNTS-SMTP: FB35398085D3A70FF157A405482304A9DBB4B22D964B743A04618B5488A378CF2000:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-detectseparation): New variable. Change-Id: I6c795719c22a6ff929785e799f749ce053e83fbe --- gnu/packages/cran.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1fdd5eb685..57dabc8ec3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4253,6 +4253,38 @@ (define-public r-depmixs4 mixture models.") (license license:gpl2+))) +(define-public r-detectseparation + (package + (name "r-detectseparation") + (version "0.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "detectseparation" version)) + (sha256 + (base32 "05z3p1z5mhmdj5qdknz1b8f6fwbghzckl88pv79v59cfwpbvgmz8")))) + (properties `((upstream-name . "detectseparation"))) + (build-system r-build-system) + (propagated-inputs (list r-lpsolveapi r-pkgload r-roi r-roi-plugin-lpsolve)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/ikosmidis/detectseparation") + (synopsis + "Detect and check for separation and infinite maximum likelihood estimates") + (description + "This package provides pre-fit and post-fit methods for detecting separation +and infinite maximum likelihood estimates in generalized linear models with +categorical responses. The pre-fit methods apply on binomial-response generalized +liner models such as logit, probit and cloglog regression, and can be directly +supplied as fitting methods to the @code{glm()} function. The post-fit methods +apply to models with categorical responses, including binomial-response +generalized linear models and multinomial-response models, such as baseline +category logits and adjacent category logits models; for example, the models +implemented in the brglm2 package. The post-fit methods successively refit the +model with increasing number of iteratively reweighted least squares iterations, +and monitor the ratio of the estimated standard error for each parameter to what +it has been in the first iteration.") + (license license:gpl3))) + (define-public r-readxl (package (name "r-readxl") From patchwork Tue Apr 23 11:25:46 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 63311 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id D789427BBE9; Tue, 23 Apr 2024 12:28:39 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id A089527BBE2 for ; Tue, 23 Apr 2024 12:28:38 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rzEJh-0002l3-R1; Tue, 23 Apr 2024 07:28:05 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rzEJg-0002kO-6s for guix-patches@gnu.org; Tue, 23 Apr 2024 07:28:04 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rzEJf-00066e-Ul for guix-patches@gnu.org; Tue, 23 Apr 2024 07:28:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rzEJw-00013x-D5; Tue, 23 Apr 2024 07:28:20 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#70535] [PATCH 5/5] gnu: Add r-metadeconfoundr. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Tue, 23 Apr 2024 11:28:20 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 70535 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <70535@debbugs.gnu.org> Cc: Ricardo Wurmus X-Debbugs-Original-Xcc: Ricardo Wurmus Received: via spool by 70535-submit@debbugs.gnu.org id=B70535.17138716643644 (code B ref 70535); Tue, 23 Apr 2024 11:28:20 +0000 Received: (at 70535) by debbugs.gnu.org; 23 Apr 2024 11:27:44 +0000 Received: from localhost ([127.0.0.1]:51586 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzEJL-0000wV-5z for submit@debbugs.gnu.org; Tue, 23 Apr 2024 07:27:44 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:48133) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzEIv-0000qn-VK for 70535@debbugs.gnu.org; Tue, 23 Apr 2024 07:27:23 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1713871615; x=1715686016; bh=9t/mnNAUXvhSpDTMmFA+119bdyv2dDOX9o/3WgZtyEc=; b=dpdZDXfTiY/m 6ke2J1P0ZGQXP/OlWCUU4BdnunCu6DcdUoi8DaJDGYp6x4cVxtH+J2DBuVSaVYv2 l3h6fWmTu2jMaPbY+O7mYsqXA4rzESQeAqYqs0+zEntDMW2kgZDu+KT4t/15UPKL UAhpOBFCI/WFAWySm663NZp/9Cywkm8= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 7294CA02D0 for <70535@debbugs.gnu.org>; Tue, 23 Apr 2024 13:26:55 +0200 (CEST) Received: from cl-akalin11.mdc-berlin.net (141.80.219.20) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.4; Tue, 23 Apr 2024 13:26:54 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Tue, 23 Apr 2024 13:25:46 +0200 Message-ID: X-Mailer: git-send-email 2.41.0 In-Reply-To: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@mdc-berlin.de> References: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.219.20] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-AS-Result: No-10--2.755500-5.000000 X-TMASE-MatchedRID: ZAkTtSyZ7B4EZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhT8G rOCpEVPfd3WaQ3GsfAGQd7hqnnHt1D8QN0j0kvfBFm7cDHk2CrxR3UkpERYmZG+JnhV8fY5sAxI +UWxLhU3b6BScdt0umD4dyzxrPSnIj0JAXfvDdWvJtoyGVE0N8AjIhAT2d4YV7KCoGDogSW/QED 4DCZd1zNVodJeFGnl2oPM6HIwpXhTM/fxBPasX2BTQh4VYEDfkDV6Iiby24ZdVzqjGDXmIZhEuO qgkm3/1uSW68VCdRGSiWLhmiI4dP+5bqUkQKW6WzEVb/qxkUfiBZin66arg6fp0hsR5QB1hmgTL YtH9/xC6POz5YTgkbl4AKspTZB2XEHfFTNZUGCovmZjuVz/eq84nHbRF8bTqndYJGDelwst0CfP GRz/A475iX+rqLWae/WY7WJgskOpPhxsEgoy4er7rweoAIK8o X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.755500-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-SNTS-SMTP: B4BA6CC67418246CB6DA85051D653877924FB33C82015C9C216CB0DAFD21970B2000:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-metadeconfoundr): New variable. Change-Id: I733fb464d2a3c7fd1335826be9f23e2610e6fd60 --- gnu/packages/cran.scm | 41 +++++++++++++++++++++++++++++++++++++++++ 1 file changed, 41 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 57dabc8ec3..46749aa714 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -41612,6 +41612,47 @@ (define-public r-metadat analyses.") (license license:gpl2+))) +(define-public r-metadeconfoundr + ;; There are some consistent updates after the release of version 0.3.0. + (let ((commit "90aec0226c5128bfcbbc08903452eff460d21424") + (revision "1")) + (package + (name "r-metadeconfoundr") + (version (git-version "0.3.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/TillBirkner/metadeconfoundR") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0zkqar27p5qwq46xbxsw5x1pl50xbkgqiizw5bydlyhwb0ga2f3h")))) + (properties `((upstream-name . "metadeconfoundR"))) + (build-system r-build-system) + (propagated-inputs (list r-bigmemory + r-detectseparation + r-doparallel + r-dosnow + r-foreach + r-futile-logger + r-ggplot2 + r-lme4 + r-lmtest + r-reshape2 + r-snow)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/TillBirkner/metadeconfoundR") + (synopsis "Check multiple covariates for potenial confounding effects") + (description + "This package detects naive associations between omics features and +metadata in cross-sectional data-sets using non-parametric tests. In a second +step, confounding effects between metadata associated to the same omics feature +are detected and labeled using nested post-hoc model comparison tests. The +generated output can be graphically summarized using the built-in plotting +function.") + (license license:gpl2)))) + (define-public r-mathjaxr (package (name "r-mathjaxr")