From patchwork Mon Mar 11 11:06:42 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61624 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 83D1127BBEA; Mon, 11 Mar 2024 11:08:46 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 18F7927BBE2 for ; Mon, 11 Mar 2024 11:08:46 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdWB-0005Xy-KO; Mon, 11 Mar 2024 07:08:31 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdW8-0005XM-PC for guix-patches@gnu.org; Mon, 11 Mar 2024 07:08:28 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdW8-0001Ac-G4 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:08:28 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdWg-0002Ym-8A for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 01/41] gnu: arpack-ng: Switch to openblas. References: <20240311110423.10785-1-romain.garbage@inria.fr> In-Reply-To: <20240311110423.10785-1-romain.garbage@inria.fr> Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:09:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.17101553409814 (code B ref 69729); Mon, 11 Mar 2024 11:09:02 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:00 +0000 Received: from localhost ([127.0.0.1]:38970 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWd-0002Y8-P6 for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:00 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58339) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWb-0002Xe-Iv for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:08:58 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:mime-version: content-transfer-encoding; bh=/m0KF2ReDiCY8WVMDetHWxKBK+r7DLH9qpUI7pGxG0o=; b=lByjKRe7dagmjamxisZXjrnqLqQhpqnMwp4Z3qfwbvrAc7OMcKMUm1QF 6sPcCPaKrx12qVo844N3JbRdyDbHeMNsvYz+hOa6kkz7thmspLT9VCsfI N2wssB7TlC9LwCU2j+zpqObo8An6bzlxAhslCf8i9ufpkL63agz5vEmUn A=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786605" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:18 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:06:42 +0100 Message-ID: <20240311110750.16327-2-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (arpack-ng): Switch inputs from lapack to openblas. Change-Id: I0d825373f0f267cc97748a9c2c7de1d73698354e --- gnu/packages/maths.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 47070ded15..e9deef60f4 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1070,7 +1070,7 @@ (define-public arpack-ng (native-inputs (list pkg-config)) (inputs - (list eigen lapack gfortran)) + (list eigen openblas gfortran)) (synopsis "Fortran subroutines for solving eigenvalue problems") (description "ARPACK-NG is a collection of Fortran77 subroutines designed to solve From patchwork Mon Mar 11 11:06:43 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61626 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5621A27BBE9; Mon, 11 Mar 2024 11:09:51 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id B738727BBE2 for ; Mon, 11 Mar 2024 11:09:50 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdX7-0005mR-8K; Mon, 11 Mar 2024 07:09:29 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdX6-0005mB-Ma for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:28 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdX6-0001Lo-EV for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:28 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXd-0002gn-Vu for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 02/41] gnu: armadillo: Switch to openblas. 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Change-Id: I718371f2e95fafc31e5dccddccbc223c111f594d --- gnu/packages/maths.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index e9deef60f4..0c3216d0f0 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -4987,7 +4987,7 @@ (define-public armadillo (build-system cmake-build-system) (arguments `(#:tests? #f)) ; no test target (inputs - (list openblas lapack arpack-ng)) + (list openblas arpack-ng)) (home-page "https://arma.sourceforge.net/") (synopsis "C++ linear algebra library") (description From patchwork Mon Mar 11 11:06:44 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61625 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 44BEA27BBEA; Mon, 11 Mar 2024 11:09:43 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D2BD127BBE2 for ; Mon, 11 Mar 2024 11:09:42 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdXE-0005vf-NS; Mon, 11 Mar 2024 07:09:38 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdX7-0005mN-2R for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:29 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdX6-0001Lu-Pd for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:28 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXe-0002gv-Hn for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 03/41] gnu: octave-cli: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.17101553439878 (code B ref 69729); Mon, 11 Mar 2024 11:10:02 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:03 +0000 Received: from localhost ([127.0.0.1]:38979 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWg-0002Yu-Kq for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:03 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58339) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWd-0002Xe-IT for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:00 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=Fp71u5AvPozb7QiO5TixLbJM1O1MjXLhJFmHRgpA0Bk=; b=b95dIsL/R6OgUeac/KqxX7ZZGbscoOt6SXbX3JB4FQV+AHzswBrVfdXF hgDBjpulKMg9yeRB82ls+yIB52GXfUpqu8INQFBNfAQtrMwehGdtW/q6h XC93o6yQYKF/7FmyfD3Be5vHdHyhqjOhEdH2JAJbcAkAM8nuZsK17aXzv 8=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786611" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:19 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:06:44 +0100 Message-ID: <20240311110750.16327-4-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (octave-cli): Switch input dependency from lapack to openblas. Change-Id: I3a624a44c1c9bc6be7360cfecbb61c955fa0d209 --- gnu/packages/maths.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 0c3216d0f0..c42626ffca 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -2955,10 +2955,10 @@ (define-public octave-cli libjpeg-turbo hdf5 - lapack libsndfile libxft mesa + openblas pcre portaudio qhull From patchwork Mon Mar 11 11:06:45 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61629 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 1A3E527BBEA; Mon, 11 Mar 2024 11:10:27 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id AE13027BBE2 for ; Mon, 11 Mar 2024 11:10:26 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdXb-00063z-08; Mon, 11 Mar 2024 07:09:59 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdX8-0005ma-AO for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:30 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdX7-0001M1-BK for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:29 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXf-0002h2-3e for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 04/41] gnu: scalapack: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.17101553449892 (code B ref 69729); Mon, 11 Mar 2024 11:10:03 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:04 +0000 Received: from localhost ([127.0.0.1]:38981 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWh-0002ZE-73 for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:04 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58339) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWe-0002Xe-Ak for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:00 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=BdYH1JaY7PyEoYXdX8iyXiAgg+n0+8bN+QKkrM/3KBg=; b=q+wZU6TDIut8mj0lfNhTze3X9lMpb0KslB8AjPlox0adLuwK5XUt+Bcl OrVd+mUIX6Hjkuhc1h915cZxPfOX77BKCKal2KgQHovI+8ao8Kmd6LRNh 4xUVQTmHDenxhXdC9rR6TTrOmYMc618Hig/7LsrfFzBs++E+ZT2/LDVEJ U=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786614" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:19 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:06:45 +0100 Message-ID: <20240311110750.16327-5-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (scalapack): Switch input dependency from lapack to openblas. Change-Id: Ie025e6ced66c75755314b53989547ffe26fbcd11 --- gnu/packages/maths.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index c42626ffca..7deb652e77 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1197,7 +1197,7 @@ (define-public scalapack (inputs `(("mpi" ,openmpi) ("fortran" ,gfortran) - ("lapack" ,lapack))) ;for testing only + ("lapack" ,openblas))) ;for testing only (arguments `(#:configure-flags `("-DBUILD_SHARED_LIBS:BOOL=YES") #:phases (modify-phases %standard-phases From patchwork Mon Mar 11 11:06:46 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61631 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 1644327BBEA; Mon, 11 Mar 2024 11:10:38 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D4E4C27BBE2 for ; Mon, 11 Mar 2024 11:10:34 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdXb-00065N-MT; Mon, 11 Mar 2024 07:10:01 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdX8-0005mb-B9 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:30 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdX7-0001M2-Sk for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:30 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXf-0002hA-Kw for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 05/41] gnu: hypre: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.17101553459906 (code B ref 69729); Mon, 11 Mar 2024 11:10:03 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:05 +0000 Received: from localhost ([127.0.0.1]:38985 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWi-0002ZV-45 for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:04 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58339) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWe-0002Xe-VW for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:01 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=REzWdY1cS5fBWxe6ekz6vE1B99++/N2KwLnv/CRNGoo=; b=DXtRtSV6/AIaA0Wwbmom86OQSsqp7Y5Og9EoeWC50m53RL/eSBD3aGpv ZNSOwonprh3jygW0cvlBofKzfcMra0Ruezi+Ho3q4SkGjyUFpYLGpT8TM nBT3bOTU0LJe9wuHA6yiLxRTlb7gRFC09/VSmeYGMkvsUZb1I/wzDcgg+ I=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786616" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:19 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:06:46 +0100 Message-ID: <20240311110750.16327-6-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (hypre): Switch input dependency from lapack to openblas. Change-Id: I8bc2c3abf0d3ead52c9616e1a23bf4ac6113ac3b --- gnu/packages/maths.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 7deb652e77..e80b7df0e2 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -7106,7 +7106,7 @@ (define-public hypre texlive-xcolor texlive-xypic)))) (inputs - (list openblas lapack)) + (list openblas)) (arguments `(#:modules ((srfi srfi-1) ,@%gnu-build-system-modules) From patchwork Mon Mar 11 11:06:47 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61659 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 87C3527BBE9; Mon, 11 Mar 2024 11:14:05 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 36E9527BBE2 for ; Mon, 11 Mar 2024 11:14:04 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdbD-0008O3-L0; Mon, 11 Mar 2024 07:13:43 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdbC-0008Nq-7V for guix-patches@gnu.org; Mon, 11 Mar 2024 07:13:42 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdX9-0001PQ-HM for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:31 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXg-0002hH-94 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:04 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 06/41] gnu: igraph: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.17101553459921 (code B ref 69729); Mon, 11 Mar 2024 11:10:04 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:05 +0000 Received: from localhost ([127.0.0.1]:38988 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWi-0002Zj-SJ for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:05 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58339) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWf-0002Xe-KF for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:01 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=9g2T+1InGpkvB13O4MBagqlUPWQZjFK6BMa1lLXLIug=; b=afxCiSpBVghxsvxbYPP5ievMVw4pSNVaRVOqCG/zXm/szltDM5AkMnTn X/n7bJP339abcSJ++fx34ZzockSeEzqwsF0vROtKziFnp/PGO1ZlFquDv /uL2NKEsjD8DYqjC2KbFjvduuo84ttwM38gQXDk5BYgZJ4DYi9Vcmm6oF U=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786618" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:19 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:06:47 +0100 Message-ID: <20240311110750.16327-7-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/graph.scm (igraph): Switch input dependency from lapack to openblas. Change-Id: Idcaada16496d2854cce7375b4d9fa647430206eb --- gnu/packages/graph.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index a3607689a3..437f744451 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -195,7 +195,7 @@ (define-public igraph (list arpack-ng bliss glpk - lapack + ;lapack openblas plfit suitesparse-cxsparse)) From patchwork Mon Mar 11 11:06:48 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61634 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 11F3F27BBEA; Mon, 11 Mar 2024 11:11:10 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 8360C27BBE2 for ; Mon, 11 Mar 2024 11:11:09 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYd-0006QR-FL; Mon, 11 Mar 2024 07:11:04 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXB-0005tU-CJ for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:33 -0400 Received: from [2001:470:142:5::43] (helo=debbugs.gnu.org) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdX9-0001NK-0v for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:31 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXg-0002hO-Pe for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:04 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 07/41] gnu: vosk-api: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015535910079 (code B ref 69729); Mon, 11 Mar 2024 11:10:04 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:19 +0000 Received: from localhost ([127.0.0.1]:39021 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWw-0002cT-Kb for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:19 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58339) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWg-0002Xe-9T for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:03 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=JNTjudAGsGglnmX9uJW1tL4Si97KPBuI0pjMhfd/I4U=; b=USMt+ll52Utbv7atQl4q/Yx5S0bDtT7M8V1bfG2cIyb1RX+aSqV84uYY j7qJy6mT52sfDyuhlP9oy9jRTyF6IVqZoy+zs+j1PoVjYZRI6EVMEtbmN s/YPdAhH7m0FGS1B7xTPrTF1lIuYRH+x2le3R+FwAtTURCLqcZXomYhyV E=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786620" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:19 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:06:48 +0100 Message-ID: <20240311110750.16327-8-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/machine-learning.scm (vosk-api): Remove input dependency on lapack. Change-Id: Id46b37f06bffde5f8a198c1ac913a3dff8ce63e6 --- gnu/packages/machine-learning.scm | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 5c18a2e9d5..e51877411d 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -5105,8 +5105,7 @@ (define-public vosk-api (lambda _ (chdir "src"))) (replace 'configure (lambda _ - (let* ((lapack #$(this-package-input "lapack")) - (openfst #$(this-package-input "openfst")) + (let* ((openfst #$(this-package-input "openfst")) (openblas #$(this-package-input "openblas")) (kaldi #$(this-package-input "kaldi"))) (substitute* "./Makefile" @@ -5116,8 +5115,7 @@ (define-public vosk-api "") (("-lopenblas -llapack -lblas -lf2c") (string-append - "-L" openblas "/lib " "-lopenblas " - "-L" lapack "/lib " "-llapack -lblas ")) + "-L" openblas "/lib " "-lopenblas ")) (("-lfst -lfstngram") (string-append "-L" openfst "/lib " "-lfst -lfstngram ")) @@ -5139,7 +5137,7 @@ (define-public vosk-api (for-each (lambda (x) (install-file x src)) (find-files "." "\\.h$")))))))) - (inputs (list kaldi openfst lapack openblas)) + (inputs (list kaldi openfst openblas)) (home-page "https://alphacephei.com/vosk") (synopsis "Speech recognition toolkit based on @code{kaldi}") (description "\ From patchwork Mon Mar 11 11:06:49 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61640 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 84A5D27BBEC; Mon, 11 Mar 2024 11:11:34 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 11A4627BBE2 for ; Mon, 11 Mar 2024 11:11:34 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYo-0006ms-1r; Mon, 11 Mar 2024 07:11:14 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXB-0005tl-Gi for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:34 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXA-0001U6-Q5 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:33 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXh-0002hW-Hs for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:05 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 08/41] gnu: jags: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015535910086 (code B ref 69729); Mon, 11 Mar 2024 11:10:05 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:19 +0000 Received: from localhost ([127.0.0.1]:39023 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWx-0002cW-Bt for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:19 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58339) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWh-0002Xe-DN for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:03 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=mJoFUd7z47o9fTpU5BovwIVNjInVo7j2oWAjQdmhrEQ=; b=nhioyPLO8EsSZSxtL/bCMSPiv9QVw0t5WBAfc/XP6JK+pQF5Y/phM7a2 ivfHnF4V6OkAKiWPnKmAWUklEFZfT7ZPH+YvllgMzw//WBySeVrQ0gfrn wOFaqyzeVqFcIv0x3krEVzjf/jRvioSWo5wKoMwzDQIJPOXHPj4XrhQ6R w=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786622" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:19 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:06:49 +0100 Message-ID: <20240311110750.16327-9-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/statistics.scm (jags) [inputs]: Switch input dependency from lapack to openblas. [arguments]: Add configure flags. Change-Id: Iea0efef5c70a5284f6859c1424fd4523edcf2bac --- gnu/packages/statistics.scm | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 0d9f593614..3a70f5f997 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -180,9 +180,13 @@ (define-public jags (base32 "0aa2w4g5057vn1qjp954s2kwxfmy1h7p5yn56fyi7sz9nmaq69gr")))) (build-system gnu-build-system) + (arguments + (list #:configure-flags + #~(list "--with-lapack=-lopenblas" + "--with-blas=-lopenblas"))) (home-page "https://mcmc-jags.sourceforge.net/") (native-inputs - (list gfortran lapack)) + (list gfortran openblas)) (synopsis "Gibbs sampler") (description "JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) From patchwork Mon Mar 11 11:06:50 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61630 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id E238D27BBE9; Mon, 11 Mar 2024 11:10:37 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 13F0D27BBEA for ; Mon, 11 Mar 2024 11:10:37 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdXw-0006Bj-3u; Mon, 11 Mar 2024 07:10:27 -0400 Received: from [2001:470:142:3::10] (helo=eggs.gnu.org) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXA-0005re-LG for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:32 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXA-0001Se-Bd for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:32 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXi-0002hd-2z for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:06 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 09/41] gnu: sbcl-lla: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:06 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015536010094 (code B ref 69729); Mon, 11 Mar 2024 11:10:06 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:20 +0000 Received: from localhost ([127.0.0.1]:39025 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWx-0002cd-MV for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:19 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58344) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWh-0002Y1-S4 for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:04 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=l+46uJWSElQg5mAn7jUXckT4SiWigYfQ2KGNsUIkQzM=; b=Yn9a3Z1i7bvTFNtDky+kTN8GPl4VEkQ6mqPNvMd6YPk08b3XtHf4Ff3R D0+pD+wCvL3iQah+MGISQu6hEfXaD2roePCncKSzT00XY2gFY+WdmwsIA yBVxL0zaoeze3nF+1wce9v2Rqsg7oiDTgLH8gLlMictyFtB8i+NvTQBbq U=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786624" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:19 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:06:50 +0100 Message-ID: <20240311110750.16327-10-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/lisp-xyz.scm (sbcl-lla): Switch input dependency from lapack to openblas and fixup. Change-Id: I1d17ed3299a9e62f15b6e52e5ae2c9b9134646d1 --- gnu/packages/lisp-xyz.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm index 6ee8ef22d2..e5a943e32c 100644 --- a/gnu/packages/lisp-xyz.scm +++ b/gnu/packages/lisp-xyz.scm @@ -25021,17 +25021,17 @@ (define-public sbcl-lla (substitute* "src/configuration.lisp" (("\"libblas.so.3gf\"") (string-append "\"" (assoc-ref inputs "lapack") - "/lib/libblas.so\"")) + "/lib/libopenblas.so\"")) (("\"liblapack.so.3gf\"") (string-append "\"" (assoc-ref inputs "lapack") - "/lib/liblapack.so\"")))))))) + "/lib/libopenblas.so\"")))))))) (inputs `(("anaphora" ,sbcl-anaphora) ("alexandria" ,sbcl-alexandria) ("cffi" ,sbcl-cffi) ("cl-num-utils" ,sbcl-cl-num-utils) ("cl-slice" ,sbcl-cl-slice) - ("lapack" ,lapack) + ("lapack" ,openblas) ("let-plus" ,sbcl-let-plus))) (native-inputs (list sbcl-clunit)) From patchwork Mon Mar 11 11:06:51 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61651 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id DD27927BBEA; Mon, 11 Mar 2024 11:12:03 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 7B4C627BBE2 for ; Mon, 11 Mar 2024 11:12:03 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYk-0006hX-Nv; Mon, 11 Mar 2024 07:11:10 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXB-0005tm-HJ for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:34 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXA-0001UB-Sg for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:33 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXi-0002hk-L5 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:06 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 10/41] gnu: itpp: Switch to openblas. 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Change-Id: I42606d5ed379093a076790d2b300dfa96f18d2ea --- gnu/packages/maths.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index e80b7df0e2..29b6bbf76f 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -2151,7 +2151,7 @@ (define-public itpp ;; SOURCE_DATE_EPOCH (lambda _ (setenv "FORCE_SOURCE_DATE" "1")))))) - (inputs (list lapack fftw)) + (inputs (list openblas fftw)) ;; FIXME: Even though the fonts are available dvips complains: ;; "Font cmmi10 not found; characters will be left blank." (native-inputs From patchwork Mon Mar 11 11:06:52 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61627 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 7EDB227BBEA; Mon, 11 Mar 2024 11:09:59 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 1693A27BBE2 for ; Mon, 11 Mar 2024 11:09:59 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdXR-0005xX-Eq; Mon, 11 Mar 2024 07:09:49 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXB-0005tp-KA for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:34 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXB-0001UO-A9 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:33 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXj-0002ht-3j for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:07 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 11/41] gnu: gmsh: Switch to openblas. 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Change-Id: Ib04c07a51f3af65d259b9970073ec1f68603aed4 --- gnu/packages/maths.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 29b6bbf76f..d38dac267f 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -3262,11 +3262,11 @@ (define-public gmsh glu gmp hdf5 - lapack libx11 libxext mesa metis + openblas opencascade-occt)) (inputs (list fontconfig From patchwork Mon Mar 11 11:06:53 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61645 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 40FF427BBE9; Mon, 11 Mar 2024 11:11:47 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 748B527BBE2 for ; Mon, 11 Mar 2024 11:11:45 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYr-0006qD-HG; Mon, 11 Mar 2024 07:11:17 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXB-0005u5-Ub for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:34 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXB-0001Ub-ME for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:33 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXj-0002i0-G0 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:07 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 12/41] gnu: ghc-hmatrix: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:07 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015536110116 (code B ref 69729); Mon, 11 Mar 2024 11:10:07 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:21 +0000 Received: from localhost ([127.0.0.1]:39031 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWy-0002cz-Mh for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:20 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58344) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWi-0002Y1-TK for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:06 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=CF2px0CcoEvx5Dew1u3kHpZ36nq06rR+2a6psVLrne4=; b=i9OYM5k98nepobGPf1jtb3qikHNhUa77LydeJfHHZhsWJQCgrMNsLFxI +fpH6OaJ6WidwZfykNnp1PJxfvJU7jtHXmwihFFcBXnXKQflZ+pjdreIP FwX6+FGshqGTSd5w/3p9WjefNOMvXD7UmbaqX9piiRAUS/xm0MeHEdb2E 0=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786630" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:20 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:06:53 +0100 Message-ID: <20240311110750.16327-13-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/haskell-xyz.scm (ghc-hmatrix): Switch input dependency from lapack to openblas. Add configure flags. Change-Id: Ic8924b1fb9fa61af16abd1ac2a22c82a352a8e1b --- gnu/packages/haskell-xyz.scm | 9 +++------ 1 file changed, 3 insertions(+), 6 deletions(-) diff --git a/gnu/packages/haskell-xyz.scm b/gnu/packages/haskell-xyz.scm index 5d9e5757a0..b5943f2f47 100644 --- a/gnu/packages/haskell-xyz.scm +++ b/gnu/packages/haskell-xyz.scm @@ -5325,18 +5325,15 @@ (define-public ghc-hmatrix (build-system haskell-build-system) (properties '((upstream-name . "hmatrix"))) (arguments - `(#:extra-directories ("lapack"))) + `(#:configure-flags '("--flags=openblas") + #:extra-directories ("openblas"))) (inputs (list ghc-random ghc-split ghc-storable-complex ghc-semigroups ghc-vector - ;;("openblas" ,openblas) - lapack)) - ;; Guix's OpenBLAS is built with the flag "NO_LAPACK=1" which - ;; disables inclusion of the LAPACK functions. - ;; (arguments `(#:configure-flags '("--flags=openblas"))) + openblas)) (home-page "https://github.com/albertoruiz/hmatrix") (synopsis "Haskell numeric linear algebra library") (description "The HMatrix package provices a Haskell library for From patchwork Mon Mar 11 11:06:54 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61647 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id A84BE27BBE2; Mon, 11 Mar 2024 11:11:50 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D2F9427BBEA for ; Mon, 11 Mar 2024 11:11:49 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYk-0006h9-GN; Mon, 11 Mar 2024 07:11:10 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXC-0005vc-OT for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXC-0001Ug-4F for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:34 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXj-0002i7-SR for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:07 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 13/41] gnu: fenics-dolfin: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:07 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015536110125 (code B ref 69729); Mon, 11 Mar 2024 11:10:07 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:21 +0000 Received: from localhost ([127.0.0.1]:39033 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWz-0002d7-1U for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:21 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58339) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWj-0002Xe-FR for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:06 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=iO/AIwfbnlUah3ZhWOoUC1AB40KYtQRUPW5OLuURBZk=; b=cXX7h8+93a8lx+8C3W59DFm+xqEGbW496/L41EgcQ22dpimvjQCFmf2N FZ85aBbkd5hrd0ZaqebKx4zTH4VDD+6cRCS6omKg+cxtVr/nRGWCB0ajJ sRWqBAEF8GMnBQlEXVnS10xna4rRXCnKDsozT0o3LsobW/HIPwKvWsCiJ I=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786632" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:20 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:06:54 +0100 Message-ID: <20240311110750.16327-14-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/simulation.scm (fenics-dolfin): Remove input dependency from to lapack. Change-Id: Ie60437e365c45e92f03ac3f147ec41eba40e2963 --- gnu/packages/simulation.scm | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index b2fb123815..8cbf9be22a 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -773,7 +773,6 @@ (define-public fenics-dolfin boost eigen hdf5-parallel-openmpi - lapack libxml2 openmpi python-3 @@ -805,7 +804,7 @@ (define-public fenics-dolfin (setenv "CATCH_DIR" #$(this-package-input "catch")) (setenv "LAPACK_DIR" - #$(this-package-input "lapack")) + #$(this-package-input "openblas")) (setenv "PETSC_DIR" #$(this-package-input "petsc")) (setenv "SLEPC_DIR" From patchwork Mon Mar 11 11:06:55 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61648 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 2090427BBE9; Mon, 11 Mar 2024 11:11:55 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 745D427BBEA for ; Mon, 11 Mar 2024 11:11:54 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYj-0006dy-1A; Mon, 11 Mar 2024 07:11:09 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXE-0005vy-Im for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXD-0001Ux-0l for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXk-0002iM-QC for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:08 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 14/41] gnu: ipopt: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:08 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015536210141 (code B ref 69729); Mon, 11 Mar 2024 11:10:08 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:22 +0000 Received: from localhost ([127.0.0.1]:39037 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWz-0002dS-RM for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:22 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58345) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWk-0002Y7-1N for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:07 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=MR1RHr5N+1DEdawoR7RJ/2oPaGbhwNfAvBRW+reqCGM=; b=ixrPxvNC+6qiG6eASGuNQ6OdHNLknmF31KXolQnIJ5B7FQQzWPTn5Hlg rm/nX0aUeZhXJ+uXGZGS+of9OkqHmip1ltLR2TEZP+zi9NZQkpbCZLZoA txUpM2ONn7at5VDUAfReg8jFC5V1QERrtVBMoP/mE5dUA4lhvOpc2Zd3M o=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786634" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:20 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:06:55 +0100 Message-ID: <20240311110750.16327-15-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (ipopt): Switch input dependency from lapack to openblas and add required configure flags. Change-Id: I58b84f0741a973adf81da1716e2e2659af1c50c4 --- gnu/packages/maths.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index d38dac267f..916dcde2c1 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -2399,7 +2399,8 @@ (define-public ipopt "08gznhwhqv1x4baksz350ih8q16r5rd0k8vals6078m3h94khr4b")))) (build-system gnu-build-system) (arguments - '(#:phases (modify-phases %standard-phases + '(#:configure-flags (list "--with-lapack=-lopenblas") + #:phases (modify-phases %standard-phases (add-after 'install 'add--L-flags-in-ipopt.pc (lambda* (#:key inputs outputs #:allow-other-keys) ;; The '.pc' file lists '-llapack -lblas' in "Libs"; @@ -2412,14 +2413,14 @@ (define-public ipopt (("Libs: (.*)-llapack -lblas(.*)$" _ before after) (string-append "Libs: " before " " after "\n" "Libs.private: " before - "-L" lapack "/lib -llapack -lblas " + "-L" openblas "/lib -lopenblas" after "\n"))) #t)))))) (native-inputs (list gfortran pkg-config)) (inputs ;; TODO: Maybe add dependency on COIN-MUMPS, ASL, and HSL. - (list lapack)) ;for both libblas and liblapack + (list openblas)) ;for both libblas and liblapack (home-page "https://www.coin-or.org") (synopsis "Large-scale nonlinear optimizer") (description From patchwork Mon Mar 11 11:06:56 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61658 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 04EE927BBEA; Mon, 11 Mar 2024 11:12:30 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 9A2FB27BBE2 for ; Mon, 11 Mar 2024 11:12:29 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYv-0006wQ-1F; Mon, 11 Mar 2024 07:11:21 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXE-0005w0-Jr for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXD-0001V0-F8 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXl-0002iU-80 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:09 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 15/41] gnu: ceres: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:09 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015536210148 (code B ref 69729); Mon, 11 Mar 2024 11:10:09 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:22 +0000 Received: from localhost ([127.0.0.1]:39039 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdX0-0002dW-8i for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:22 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58347) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWk-0002YQ-8w for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:07 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=dM0Hl1owMicrzz2NY6TRvQtHtxXyXEQ22ByvhMRckSY=; b=J2uzkYX38k+3MotCL67rdftDqkwhhblBQUGDUbPP/tlPCTNPSaaoV9XQ opMmHojz2Bn20Bzf1UJG1GQ5XaS8T0sjjyCLnXLpjqe1MzSPjD78IFBOg dF6+SBPdcJ2+o6kY9QRT2s8KPR/R4Boxg6zHzHW6zxwCa4QxNG3TuWTWU k=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786636" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:20 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:06:56 +0100 Message-ID: <20240311110750.16327-16-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (ceres): Remove dependency to lapack. Change-Id: Iac55faf30a83bbbe3693cac73a9996af8ddcbde7 --- gnu/packages/maths.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 916dcde2c1..4990c80dd3 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -2858,7 +2858,7 @@ (define-public ceres (native-inputs (list pkg-config)) ;; These inputs need to be propagated to satisfy dependent packages. (propagated-inputs (list eigen gflags glog)) - (inputs (list openblas lapack suitesparse)) + (inputs (list openblas suitesparse)) (synopsis "C++ library for solving large optimization problems") (description "Ceres Solver is a C++ library for modeling and solving large, From patchwork Mon Mar 11 11:06:57 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61644 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 00BAC27BBEA; Mon, 11 Mar 2024 11:11:43 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 90EE427BBE2 for ; Mon, 11 Mar 2024 11:11:43 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYq-0006pg-25; Mon, 11 Mar 2024 07:11:16 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXC-0005vd-R3 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXC-0001Uj-Hh for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:34 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXk-0002iF-Aj for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:08 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 16/41] gnu: sundials-julia: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:08 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015536110132 (code B ref 69729); Mon, 11 Mar 2024 11:10:08 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:21 +0000 Received: from localhost ([127.0.0.1]:39035 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWz-0002dF-CN for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:21 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58344) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWk-0002Y1-AC for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:06 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=ssjhcXmnWaB42AJ6df2L8S0m0k7C8YsGKX/Sj/L5Eqc=; b=FBEptb1m/5qWKHS7mCpTnr20bdfGVPYaQADG7Sw8kv24feF0iVHpypqJ nUrEQv8Eon1ggPfPrzOHV1rzZ5W2Mu6b7u062ySCH5GR+a1XBC2pDl6um 3ggaZ6EvwG9mk5ZE1JCnAL4/mSM8vZVw7pqg42qhEZOrCc+l9eP0yAg5W M=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786638" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:20 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:06:57 +0100 Message-ID: <20240311110750.16327-17-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (sundials-julia): Switch input dependency from lapack to openblas. Change-Id: I7c5990b09f3a006600bab73ef998b081cbaa8935 --- gnu/packages/maths.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 4990c80dd3..980fa89d82 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -8041,7 +8041,7 @@ (define-public sundials-julia "0nx4sqhmi126m14myzm7syv2053harav9snl0a247wnkcgs5rxrv")))) (inputs (modify-inputs (package-inputs sundials) - (prepend gfortran lapack))) + (prepend gfortran openblas))) (arguments '(#:configure-flags `("-DCMAKE_C_FLAGS=-O2 -g -fcommon" "-DSUNDIALS_INDEX_SIZE=32" From patchwork Mon Mar 11 11:06:58 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61660 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 3795227BBEA; Mon, 11 Mar 2024 11:21:45 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 2E03C27BBE2 for ; Mon, 11 Mar 2024 11:21:44 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdil-0003QT-9d; Mon, 11 Mar 2024 07:21:31 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdij-0003Pz-Bh for guix-patches@gnu.org; Mon, 11 Mar 2024 07:21:29 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdii-0004H6-EV for guix-patches@gnu.org; Mon, 11 Mar 2024 07:21:29 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdjF-00035J-UM for guix-patches@gnu.org; Mon, 11 Mar 2024 07:22:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 17/41] gnu: plink: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:22:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015607511745 (code B ref 69729); Mon, 11 Mar 2024 11:22:01 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:21:15 +0000 Received: from localhost ([127.0.0.1]:39123 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdiS-00033J-QV for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:21:14 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58339) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWk-0002Xe-Lo for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:08 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=1UbpitApHFZGlid/7p76YsEpT0h790GrsvWiX5+MqBo=; b=SxbFAJg0cXZzIzRbAwPASGACgDZ352tV4lPlSqcZNAJymxraf19EE+8V e+a4HS/WbLCERkwOXes1+WIhMDCsIUN84128Yjsi8Lr1S3y85nlb3JKcg HSJPl939OWWoBAkBl0stA5k1iRODZJom868RgUly51UKBmnS+BkUZNjSS c=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786640" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:20 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:06:58 +0100 Message-ID: <20240311110750.16327-18-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (plink): Switch input dependency from lapack to openblas. Change-Id: I8066a50c880b72a77ba00c2bc39403e212605b9d --- gnu/packages/bioinformatics.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b8ecea013c..8b2fe2d017 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9599,8 +9599,8 @@ (define-public plink (arguments `(#:tests? #f ;no "check" target #:make-flags ,#~(list (string-append "LIB_LAPACK=" - #$(this-package-input "lapack") - "/lib/liblapack.so") + #$(this-package-input "openblas") + "/lib/libopenblas.so") "WITH_LAPACK=1" "FORCE_DYNAMIC=1" ;; disable phoning home @@ -9615,7 +9615,7 @@ (define-public plink "/bin/"))) (install-file "plink" bin))))))) (inputs - (list zlib lapack)) + (list zlib openblas)) (native-inputs (list unzip gcc-8)) (home-page "http://pngu.mgh.harvard.edu/~purcell/plink/") From patchwork Mon Mar 11 11:06:59 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61637 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id EA67C27BBE2; Mon, 11 Mar 2024 11:11:22 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 957C927BBEB for ; Mon, 11 Mar 2024 11:11:20 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYi-0006cJ-U1; Mon, 11 Mar 2024 07:11:08 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXE-0005vz-Ju for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXD-0001V1-TN for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXl-0002ib-MV for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:09 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 18/41] gnu: p4est: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:09 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015536310155 (code B ref 69729); Mon, 11 Mar 2024 11:10:09 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:23 +0000 Received: from localhost ([127.0.0.1]:39041 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdX0-0002dd-Lf for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:22 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58344) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWl-0002Y1-8s for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:07 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=NFp2aHutqy2EvycBKKqQwD8URw2xvv6IqAg7t6m9MlU=; b=iF6yQXhRgTOGGgdSQ2WZ1SKMIPLt8CMGp7cdvWBcUgcuwBHyQ80sCY3t YQUC/6UPtcWHxFKys3p2R7uZxGD1UEBYUlKi9L9tdxWiG+GVwHQE+EFys EMVpVT75I3Ny8koZRRS85eRurMhIUXIQivrWqDxRsVpyi7q16Ya/Yt0b4 Q=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786642" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:20 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:06:59 +0100 Message-ID: <20240311110750.16327-19-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (p4est): Remove dependency on lapack. Change-Id: I9c76f8b9ba3fc7d5feabfb059505f66ac50972c3 --- gnu/packages/maths.scm | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 980fa89d82..efe2387742 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -4730,15 +4730,14 @@ (define-public p4est (inputs `(("fortran" ,gfortran) ("blas" ,openblas) - ("lapack" ,lapack) ("zlib" ,zlib))) (arguments `(#:configure-flags `(,(string-append "BLAS_LIBS=-L" (assoc-ref %build-inputs "blas") " -lopenblas") ,(string-append "LAPACK_LIBS=-L" - (assoc-ref %build-inputs "lapack") - " -llapack")) + (assoc-ref %build-inputs "blas") + " -lopenblas")) #:phases (modify-phases %standard-phases (add-before 'check 'mpi-setup ,%openmpi-setup)))) From patchwork Mon Mar 11 11:07:00 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61628 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 4288D27BBEA; Mon, 11 Mar 2024 11:10:22 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 15F9B27BBE2 for ; Mon, 11 Mar 2024 11:10:21 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdXj-00067W-W4; Mon, 11 Mar 2024 07:10:13 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXE-0005w1-KP for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXE-0001V2-BX for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXm-0002ij-48 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:10 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 19/41] gnu: plink-ng: Remove lapack dep. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:10 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015536310163 (code B ref 69729); Mon, 11 Mar 2024 11:10:10 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:23 +0000 Received: from localhost ([127.0.0.1]:39043 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdX0-0002dk-V0 for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:23 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58345) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWl-0002Y7-CL for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:07 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=GeCeS21L5QbBPSEzdYJYjVy0rJfdt8s0gg/RfVTCjRo=; b=mEAdhoxMPDvZnKVEpyGkqUcDuZrEdL7k1ORQlqNKhCDfa6LO1pY0+W7o xLrUinBOSPEcAF3Hccm0lFB6nWcHzPMB+IFuaP7yI+mjy2pebsYohsOuX LmLqPZEmSKZaRM1QitEeMp1aad2HnXqJIZSZFMS85uUaiXo6eGXwgf/o6 k=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786644" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:20 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:00 +0100 Message-ID: <20240311110750.16327-20-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (plink-ng): Remove dependency to lapack. Change-Id: I4d14789c42dc216244872d70120efeeb97127a62 --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8b2fe2d017..6c2dc95fa6 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9650,7 +9650,7 @@ (define-public plink-ng (list #:tests? #false ;TEST_EXTRACT_CHR doesn't produce expected files #:make-flags - #~(list "BLASFLAGS=-llapack -lopenblas" + #~(list "BLASFLAGS=-lopenblas" "NO_SSE42=1" "NO_AVX2=1" "STATIC_ZSTD=" @@ -9677,7 +9677,7 @@ (define-public plink-ng (string-append (assoc-ref outputs "out") "/bin"))))))) (inputs - (list lapack openblas zlib `(,zstd "lib"))) + (list openblas zlib `(,zstd "lib"))) (native-inputs (list diffutils plink python simde)) ; for tests (home-page "https://www.cog-genomics.org/plink/") From patchwork Mon Mar 11 11:07:01 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61642 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id BE4F927BBE9; Mon, 11 Mar 2024 11:11:38 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 8BCE027BBE2 for ; Mon, 11 Mar 2024 11:11:38 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYk-0006gi-Dx; Mon, 11 Mar 2024 07:11:10 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXG-0005xH-Le for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:41 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXF-0001VU-66 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:38 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXm-0002iy-Vd for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:10 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 20/41] gnu: dealii: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:10 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015536410176 (code B ref 69729); Mon, 11 Mar 2024 11:10:10 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:24 +0000 Received: from localhost ([127.0.0.1]:39047 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdX1-0002dz-K4 for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:23 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58347) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWl-0002YQ-JA for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:09 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=O3qPvkaxnx3yEqusY8CihZEWFRy+LPTfmjo0uDDu5hM=; b=k4pG8ZYHo3PUsH+1I+b3gd33DEIrn+QKygh5hisAuar6jZ63tZHajogC oFTHHaDQIx7gDwV9PieJ5xC9+51j2VyCqV6KM9STVOwPs+HIT+GjsniOL Uk+Mgkq+z6LNmfQUdIEPDDxYtMdfXlgOVZnhGs7S5TljAaKai3LCX41NX I=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786646" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:21 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:01 +0100 Message-ID: <20240311110750.16327-21-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (dealii): Remove dependency on lapack. Change-Id: I6f3439c886a574b8a8d2d91a4afa04ed09daba7f --- gnu/packages/maths.scm | 1 - 1 file changed, 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index efe2387742..115eb8e5f0 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -6789,7 +6789,6 @@ (define-public dealii (list arpack-ng openblas gfortran - lapack muparser zlib)) (propagated-inputs From patchwork Mon Mar 11 11:07:02 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61657 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 8C78927BBE9; Mon, 11 Mar 2024 11:12:25 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 6924727BBE2 for ; Mon, 11 Mar 2024 11:12:24 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYv-0006xE-Oo; Mon, 11 Mar 2024 07:11:21 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXF-0005wo-29 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:38 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXE-0001VK-OY for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXm-0002ir-Gx for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:10 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 21/41] gnu: elemental: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:10 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015536310170 (code B ref 69729); Mon, 11 Mar 2024 11:10:10 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:23 +0000 Received: from localhost ([127.0.0.1]:39045 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdX1-0002dr-9k for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:23 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58348) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWl-0002Yk-J8 for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:08 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=JEW7wUTh9shtwdLjb+zNTLFTpIWHA04zfmzSqLMIJ0Q=; b=d+UzZHVLoZLbJcK3zgzckgoVhOZ7N9hHGutZKk6rLzcgSuHEKaUNz7zp M/sQ11ivN/FldpH2xnD3iXeyg7IF1YXGeIEM13Xn7lt3ZMg0bbI2jaK4Y P7o6migNh3HYexOWCXZgqzS+/eL1zXgI8jnPt0tMgHkWjrq3Xp1FAMmBE E=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786648" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:21 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:02 +0100 Message-ID: <20240311110750.16327-22-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (elemental): Remove dependency on lapack. Change-Id: Iad28ceb70b87a26de75feec631b40aeedf977b53 --- gnu/packages/maths.scm | 1 - 1 file changed, 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 115eb8e5f0..c14dede5e0 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -7801,7 +7801,6 @@ (define-public elemental (inputs (list `(,gfortran "lib") gmp - lapack metis mpc mpfr From patchwork Mon Mar 11 11:07:03 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61653 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 53D7B27BBEA; Mon, 11 Mar 2024 11:12:13 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id E0DD427BBE2 for ; Mon, 11 Mar 2024 11:12:12 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYw-0006xt-7t; Mon, 11 Mar 2024 07:11:22 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXI-0005xS-Fz for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:41 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXH-0001Vu-NJ for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:40 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXp-0002ji-GF for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:13 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 22/41] gnu: superlu-dist: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:13 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015538910244 (code B ref 69729); Mon, 11 Mar 2024 11:10:13 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:49 +0000 Received: from localhost ([127.0.0.1]:39059 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdXQ-0002f8-Sg for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:49 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58344) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWm-0002Y1-8X for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:09 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=44FNf6DTsFWMN6dafNUn+oKGFOmET4jm96nqJHe9M0o=; b=VSG7EdEIjboOKSE+jTA4rklxF65UleZLCXFO0ghSzYLoD1Dg3WBpuvlv +CIS/QG6U/1VqhMYWAmkZJz/7P95aNVtf8xgA98kZ4AAldgXgGgI1LIHR +didaKhIs8117SGruMneGW3DHYVYG/75azyq44zyFWLuMchbwHYd8pMlD E=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786650" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:21 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:03 +0100 Message-ID: <20240311110750.16327-23-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (superlu-dist): Remove dependency on lapack. Change-Id: I5893e16f7ef6fd688fd6b53eba6d3005b832f0ef --- gnu/packages/maths.scm | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index c14dede5e0..2b2252746e 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -4443,7 +4443,6 @@ (define-public superlu-dist (inputs `(("gfortran" ,gfortran) ("blas" ,openblas) - ("lapack" ,lapack) ("combblas" ,combinatorial-blas))) (propagated-inputs `(("mpi" ,openmpi) ;headers include MPI heades @@ -4454,7 +4453,7 @@ (define-public superlu-dist #:configure-flags (list "-DBUILD_SHARED_LIBS:BOOL=YES" "-DTPL_ENABLE_COMBBLASLIB=YES" "-DTPL_BLAS_LIBRARIES=-lopenblas" - "-DTPL_LAPACK_LIBRARIES=-llapack" + "-DTPL_LAPACK_LIBRARIES=-lopenblas" (string-append "-DTPL_PARMETIS_LIBRARIES=" (string-join '("ptscotchparmetis" "ptscotch" "ptscotcherr" From patchwork Mon Mar 11 11:07:04 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61636 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 805B827BBEC; Mon, 11 Mar 2024 11:11:21 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 91ADD27BBE9 for ; Mon, 11 Mar 2024 11:11:20 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYk-0006hc-Po; Mon, 11 Mar 2024 07:11:10 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXG-0005xF-Le for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:40 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXG-0001Va-0K for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:38 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXn-0002jD-OT for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:11 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 23/41] gnu: bonmin: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:11 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015537610203 (code B ref 69729); Mon, 11 Mar 2024 11:10:11 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:36 +0000 Received: from localhost ([127.0.0.1]:39051 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdXD-0002eP-CC for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:35 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58345) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWm-0002Y7-9w for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:10 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=VE065ZrqM9Ybfpd/Kz3xScOtIEqfDbjlCkOwvnQ3Ous=; b=pq5fa6MenzRwfj9IFlcZAqi7Pc0oOQc9YVmmnEpu0w3ICFlPHeilWOUN gP5FrPSOX8mI6GZwNnjl7lOD4tpxSggLp/fi0tWfXUxW6mH8/ikj6C2ek 1JTgLqZoaVHd8h5tE7KNIcEOqEUYCT2pvuFLvCDXYvIndxGJIcASvLBK6 A=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786652" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:21 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:04 +0100 Message-ID: <20240311110750.16327-24-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (bonmin): Switch input dependency from lapack to openblas. Change-Id: I3f1ef50827873fdc1eddcd152a74ffbbbf02ee44 --- gnu/packages/maths.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 2b2252746e..a544aa12af 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1433,7 +1433,7 @@ (define-public bonmin "153kj4wx386609g21hw3cv5yxps62qqrc64zwb9ryd2xad1w1a4y")))) (build-system gnu-build-system) (native-inputs (list gfortran pkg-config)) - (inputs (list cbc ipopt lapack)) + (inputs (list cbc ipopt openblas)) (home-page "https://coin-or.github.io/Bonmin/") (synopsis "Basic Open-source Nonlinear Mixed INteger programming") (description "Bonmin is a code for solving general MINLP (Mixed Integer From patchwork Mon Mar 11 11:07:05 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61661 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 1637427BBE9; Mon, 11 Mar 2024 11:22:00 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 8419D27BBE2 for ; Mon, 11 Mar 2024 11:21:58 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdin-0003Ql-4i; Mon, 11 Mar 2024 07:21:33 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdik-0003QF-Hr for guix-patches@gnu.org; Mon, 11 Mar 2024 07:21:30 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdij-0004H7-5L for guix-patches@gnu.org; Mon, 11 Mar 2024 07:21:29 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdjG-00035Q-9S for guix-patches@gnu.org; Mon, 11 Mar 2024 07:22:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 24/41] gnu: mpb: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:22:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015607511753 (code B ref 69729); Mon, 11 Mar 2024 11:22:02 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:21:15 +0000 Received: from localhost ([127.0.0.1]:39125 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdiV-00033O-0a for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:21:15 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58339) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWm-0002Xe-B8 for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:09 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=MIaDLJvKzs3RHLacZsql2oADAPcKERaOvx61iB2SCaY=; b=IyKS8p6gG9lKPmBrC+ri+fqhW/2tdbFAYQhfLe71F+jRlawO+2C6c/WA ulkNjUhuGu2rWZH5gaYfmI3FNiOjt5cdCVuZvECoAh/3Ka2prsGFl4qCX WVU1RzsOil1Vb6pW+vcaaWPOxa8+EkgZSCi5V17QTs+4YbiOV8u4KfPcT M=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786655" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:21 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:05 +0100 Message-ID: <20240311110750.16327-25-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/engineering.scm (mpb): Switch input dependency from lapack to openblas. Change-Id: Ie5920a0014942642360660f7022f887af4eab721 --- gnu/packages/engineering.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index ae287cf51b..0b6f1f14f3 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -1682,7 +1682,7 @@ (define-public mpb ("gsl" ,gsl) ("guile" ,guile-2.2) ("hdf5" ,hdf5) - ("lapack" ,lapack) + ("openblas" ,openblas) ("libctl" ,guile-libctl) ("readline" ,readline) ("zlib" ,zlib))) From patchwork Mon Mar 11 11:07:06 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61652 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id B8A1F27BBE9; Mon, 11 Mar 2024 11:12:07 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 2DB2427BBE2 for ; Mon, 11 Mar 2024 11:12:07 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYw-0006xR-0h; Mon, 11 Mar 2024 07:11:22 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXG-0005xG-Lk for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:41 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXF-0001VY-Hh for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:38 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXn-0002j6-Az for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:11 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 25/41] gnu: meep: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:11 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015537510195 (code B ref 69729); Mon, 11 Mar 2024 11:10:11 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:35 +0000 Received: from localhost ([127.0.0.1]:39049 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdXD-0002eM-1Q for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:35 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58348) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWm-0002Yk-IQ for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:09 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=O5Nu3Sm3Ikao1QHnoT8miT2wUErJ0C8RS1jdEbWSa5s=; b=MIK0mhrImwdZJ0hlC156dHkbNV564yDIzDgKH9rriDR2eNRQKteuaZ5P TVh/6KBKSZoVf5TLUO9ZQV7Zm3vI6vJ66O6kSMmtYmgiMcduIdSFP8sDv mVWOZaV1HGfr7x1DdqEyGr9VCL78Qng7GNsqS0dMNV/gU2SAmKIDTecvO 4=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786657" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:21 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:06 +0100 Message-ID: <20240311110750.16327-26-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/engineering.scm (meep): Switch input dependency from lapack to openblas. Change-Id: I0d7e3281b588472abd7a9b9c33249d52c925fe35 --- gnu/packages/engineering.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index 0b6f1f14f3..d6552739c6 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -1724,7 +1724,7 @@ (define-public meep ("guile" ,guile-2.2) ("harminv" ,harminv) ("hdf5" ,hdf5) - ("lapack" ,lapack) + ("openblas" ,openblas) ("libctl" ,guile-libctl) ("mpb" ,mpb) ("zlib" ,zlib))) From patchwork Mon Mar 11 11:07:07 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61635 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id DD42927BBE9; Mon, 11 Mar 2024 11:11:14 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 026E127BBE2 for ; Mon, 11 Mar 2024 11:11:14 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYl-0006ho-0k; Mon, 11 Mar 2024 07:11:11 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXI-0005xR-Fb for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:41 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXG-0001Vd-FD for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:40 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXo-0002jM-6z for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:12 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 26/41] gnu: casacore: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:12 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015537610210 (code B ref 69729); Mon, 11 Mar 2024 11:10:12 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:36 +0000 Received: from localhost ([127.0.0.1]:39053 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdXD-0002eW-QZ for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58350) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWm-0002ZN-N5 for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:10 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=BtAJFj41uKBejTzOq7d/QZU4JM8TWuycwx1iO7JthC4=; b=kBrJn1u7VeIIBnTFgApVeYp2BJ+cZ3VRJuik7cFs0CaZhcPWSeeqVbve /D/5gvMXEgZCgoOpO0YM1fd8nKyuzNgXQMhgtVSuV06Cm1ehb+hZMmOxd WMtWv6rTfg2GMARnrIjpJ5GTQgyK+rLP2QWmLagMgtV1MH6vIWL2PORJI I=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786660" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:21 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:07 +0100 Message-ID: <20240311110750.16327-27-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/astronomy.scm (casacore): Remove dependency on lapack. Change-Id: I83776d9d780715fc4fe40daad9e1724a94f6910d --- gnu/packages/astronomy.scm | 1 - 1 file changed, 1 deletion(-) diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index d7747f051d..3fce881386 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -411,7 +411,6 @@ (define-public casacore fftwf gfortran hdf5 - lapack ncurses openblas python From patchwork Mon Mar 11 11:07:08 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61639 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 99FA627BBE2; Mon, 11 Mar 2024 11:11:30 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 229AA27BBE2 for ; Mon, 11 Mar 2024 11:11:30 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYm-0006im-0J; Mon, 11 Mar 2024 07:11:12 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXI-0005xQ-FN for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:41 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXG-0001Vs-RY for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:40 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXo-0002jU-KD for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:12 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 27/41] gnu: aoflagger: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:12 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015537610217 (code B ref 69729); Mon, 11 Mar 2024 11:10:12 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:36 +0000 Received: from localhost ([127.0.0.1]:39055 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdXE-0002ed-50 for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58347) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWn-0002YQ-Bs for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:10 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=aogsS7O6rEFzPIVcXgGfoLOUx82jTjyyDH80l5cgedk=; b=PyKkxm1SvWcJDMALilBMB24OBf2YNjYL4r4dzq696Jjw1UR/DUWPnDzM xvdyE7OiuuZ7yDkyRerJ621XUgJtldZ5905ZQ3IWkCV4zVeovd+MUsLHf M2HC7yAEjYWL7cgXPYujsTS/CAbUzsZZo3z4sziopZFxPu2NrcVqagtPo E=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786662" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:21 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:08 +0100 Message-ID: <20240311110750.16327-28-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/astronomy.scm (aoflagger): Remove dependency on lapack. Change-Id: I9a8d56364c1989cca23e826bc984831a2c93b776 --- gnu/packages/astronomy.scm | 1 - 1 file changed, 1 deletion(-) diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 3fce881386..da10308ef3 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -323,7 +323,6 @@ (define-public aoflagger gsl gtkmm-3 hdf5 - lapack libpng libsigc++ libxml2 From patchwork Mon Mar 11 11:07:09 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61662 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id CAD6027BBE9; Mon, 11 Mar 2024 11:22:13 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id ACB5827BBE2 for ; Mon, 11 Mar 2024 11:22:12 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdis-0003S1-Ry; Mon, 11 Mar 2024 07:21:38 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdio-0003RD-UM for guix-patches@gnu.org; Mon, 11 Mar 2024 07:21:34 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdij-0004HA-6B for guix-patches@gnu.org; Mon, 11 Mar 2024 07:21:29 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdjG-00035X-LJ for guix-patches@gnu.org; Mon, 11 Mar 2024 07:22:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 28/41] gnu: apl: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:22:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015607911766 (code B ref 69729); Mon, 11 Mar 2024 11:22:02 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:21:19 +0000 Received: from localhost ([127.0.0.1]:39127 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdiV-00033W-F2 for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:21:19 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58339) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWn-0002Xe-E6 for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:11 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=X1VNTRtA4aCk0w35ulHmazx6rk77/umx2VUMTRWpfnA=; b=KS7wpuXeuihqsaVTbBcz8DXPXz++Mglfx2k3cQID/JxSsxyhsuEZ2iEu 068J2i2OeeccwaFA2D74kr/p5wZjSZqb9rP8zN0jSsFAdJrvAp1vOif6B AhbhqdP1xTdAR9NhZgYyDTNhpiNLews+vdMKmPHuLrjC2ytyfno0yIQOq A=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786664" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:22 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:09 +0100 Message-ID: <20240311110750.16327-29-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/apl.scm (apl): Switch input dependency from lapack to openblas. Change-Id: I29f27ee4c9277cf21fa34d718e56291427293cdf --- gnu/packages/apl.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/apl.scm b/gnu/packages/apl.scm index afe02736ad..0b56c8b088 100644 --- a/gnu/packages/apl.scm +++ b/gnu/packages/apl.scm @@ -56,7 +56,7 @@ (define-public apl (home-page "https://www.gnu.org/software/apl/") (inputs (list gettext-minimal - lapack + openblas pcre2 readline sqlite)) From patchwork Mon Mar 11 11:07:10 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61641 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id C386227BBE2; Mon, 11 Mar 2024 11:11:36 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id B9DE827BBEB for ; Mon, 11 Mar 2024 11:11:35 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYl-0006hs-27; Mon, 11 Mar 2024 07:11:11 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXI-0005xP-Fb for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:41 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXH-0001Vt-9t for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:40 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXp-0002jb-3N for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:13 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 29/41] gnu: eigensoft: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:13 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015537610224 (code B ref 69729); Mon, 11 Mar 2024 11:10:13 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:36 +0000 Received: from localhost ([127.0.0.1]:39057 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdXE-0002ek-Fg for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58344) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWn-0002Y1-Kv for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:11 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=In2RWBbFiweoO0d6ZBSUkNCqbWSM0hDrsYDpNmAij1M=; b=fQ5ckON2VjvrG6Q9WpXVDcPIf5QIqfqC1ZjoSvOB7dKtoc7ACWoKJPMK GCVG6Iri8k52/eOMHM7Iq8ZyBUIFv53b1gVkMSTOmlZUgUl1Y9dt0OdRV i+V6ApVvaM0r4Hk0TUMCbmxLFoFzPKAAyTETyCftfdvXML3KkRYqQRg3S U=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786666" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:22 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:10 +0100 Message-ID: <20240311110750.16327-30-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (eigensoft): Remove dependency on lapack. Change-Id: I9d4adfd64a32333a0d605d4ce1aa998035decf2a --- gnu/packages/bioinformatics.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6c2dc95fa6..ac2f7c1ade 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5834,7 +5834,7 @@ (define-public eigensoft (find-files "../bin" ".*")) #t)))))) (inputs - (list gsl lapack openblas perl + (list gsl openblas perl `(,gfortran "lib"))) (home-page "https://github.com/DReichLab/EIG") (synopsis "Tools for population genetics") From patchwork Mon Mar 11 11:07:11 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61633 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id D300727BBEA; Mon, 11 Mar 2024 11:10:59 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 6A7E827BBE2 for ; Mon, 11 Mar 2024 11:10:59 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYF-0006IQ-KV; Mon, 11 Mar 2024 07:10:41 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXI-0005xT-Fx for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:41 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXI-0001Vv-3C for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:40 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXp-0002jq-SS for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:13 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 30/41] gnu: proteinortho: Remove dependency on lapack. 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client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786668" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:22 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:11 +0100 Message-ID: <20240311110750.16327-31-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (proteinortho): Remove dependency on lapack. --- gnu/packages/bioinformatics.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ac2f7c1ade..98bc05d154 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8673,7 +8673,9 @@ (define-public proteinortho (substitute* "Makefile" (("INSTALLDIR=.*") (string-append - "INSTALLDIR=" (assoc-ref outputs "out") "/bin\n"))) + "INSTALLDIR=" (assoc-ref outputs "out") "/bin\n")) + (("-llapack -lblas") + "-lopenblas")) #t)) (add-before 'install 'make-install-directory ;; The install directory is not created during 'make install'. @@ -8697,7 +8699,6 @@ (define-public proteinortho ("perl" ,perl) ("python" ,python-wrapper) ("blast+" ,blast+) - ("lapack" ,lapack) ("openblas" ,openblas))) (native-inputs (list which)) From patchwork Mon Mar 11 11:07:12 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61655 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 3A82627BBE9; Mon, 11 Mar 2024 11:12:21 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 654E327BBE2 for ; Mon, 11 Mar 2024 11:12:19 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYq-0006pn-AE; Mon, 11 Mar 2024 07:11:16 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXW-00062N-1h for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:54 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXL-0001Wt-5c for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:52 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXs-0002kg-Uh for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:16 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 31/41] gnu: scilab: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:16 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015539110302 (code B ref 69729); Mon, 11 Mar 2024 11:10:16 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:51 +0000 Received: from localhost ([127.0.0.1]:39075 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdXT-0002g0-Hf for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:51 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58345) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWo-0002Y7-Dg for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:11 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=ed8FNCy8DuyigEqQks8XmR5Ovh3uDVNOa1wPn7nQEaI=; b=RowV4zo8YJ7VfruIu0cZayVTPiNYJtznDGMkL5gfyYEqG1brU9Yxq6jw Gzr1rF4RNwYKT8uheuTBvN4Tz+UoQDzJF8V9GL9HbrxsG0dGvL5h7+mpU JwZggBCMEQytcRnQjFSUhRxbMApkLThJ1N6AgwPcihGrs20v1rADwNLvZ k=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786670" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:22 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:12 +0100 Message-ID: <20240311110750.16327-32-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (scilab): Remove dependency on lapack. Change-Id: I5c825c9e6eee6f7fbde078c67d3208fcadf100b6 --- gnu/packages/maths.scm | 1 - 1 file changed, 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index a544aa12af..5aa3c50fd2 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -9776,7 +9776,6 @@ (define-public scilab fftw gettext-minimal hdf5-1.10 - lapack libarchive libx11 libxml2 From patchwork Mon Mar 11 11:07:13 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61649 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5BD2427BBE9; Mon, 11 Mar 2024 11:11:55 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 8D3B627BBE2 for ; Mon, 11 Mar 2024 11:11:53 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYp-0006pd-SR; Mon, 11 Mar 2024 07:11:15 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXI-0005xV-PK for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:41 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXI-0001WG-HU for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:40 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXq-0002jx-Aw for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:14 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 32/41] gnu: python-cvxopt: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:14 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015539010258 (code B ref 69729); Mon, 11 Mar 2024 11:10:14 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:50 +0000 Received: from localhost ([127.0.0.1]:39063 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdXR-0002fI-GR for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:49 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58350) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWo-0002ZN-Jr for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:12 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=webDFGH3zoMBAU3EiiCMpASWQNLcg/oHX/8hBl208sQ=; b=FdYpNRku1OrLBnvIVhlJa2cDoccSq03GbGcZIFB4DZizdDavGp4eZCDd PYyoj4/nLY/sH2KZf75JSThoPGjUrS+DRs/v+h6fBJ7cONvsvGVxqjOLL OqttqPKl+RFvgJagiRC30M5MYWzHdDrCT2jE7A9m9hoKu2IAFXdfNAXbk 0=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786672" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:22 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:13 +0100 Message-ID: <20240311110750.16327-33-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (python-cvxopt): Remove dependency on lapack. Change-Id: I2a28ecf1ab5ea7683d6b8adf72054d3f86892771 --- gnu/packages/maths.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 5aa3c50fd2..c6d67a1bcb 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -401,6 +401,7 @@ (define-public python-cvxopt (add-after 'unpack 'find-libraries (lambda* (#:key inputs #:allow-other-keys) (setenv "CVXOPT_BLAS_LIB" "openblas") + (setenv "CVXOPT_LAPACK_LIB" "openblas") (setenv "CVXOPT_BUILD_FFTW" "1") (setenv "CVXOPT_BUILD_GLPK" "1") (setenv "CVXOPT_BUILD_GSL" "1") @@ -409,7 +410,6 @@ (define-public python-cvxopt (list fftw glpk gsl - lapack openblas suitesparse)) (home-page "https://www.cvxopt.org") From patchwork Mon Mar 11 11:07:14 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61646 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 1F9B827BBEC; Mon, 11 Mar 2024 11:11:50 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 96E8627BBE2 for ; Mon, 11 Mar 2024 11:11:49 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYp-0006pb-Rc; Mon, 11 Mar 2024 07:11:15 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXJ-0005xY-8M for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:41 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXJ-0001WL-02 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:41 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXq-0002k5-PM for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:14 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 33/41] gnu: dlib: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:14 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015539010266 (code B ref 69729); Mon, 11 Mar 2024 11:10:14 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:50 +0000 Received: from localhost ([127.0.0.1]:39065 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdXR-0002fP-Qd for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:50 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58347) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWo-0002YQ-Re for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:12 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=teRqpkkTVDO0FhRaC47LI9UYzbJhc4syC97o0YkGiak=; b=Na2JcqlmZLO6myNbiEGX7K7Ijy4c2ezhhj9UZcCCa3dY77e0/E7nuq8v yRVp5BLA5Bq34C72MJcu0VVgoWk5mZ3OGITXShxZ+XNWlRWOmpJzIR9Xr oApJpOwXrF9fKZZMTo6ZEdCUtO2HYfalEfs3wKZI23U2xwu0n30/7eu5i M=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786674" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:22 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:14 +0100 Message-ID: <20240311110750.16327-34-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/machine-learning.scm (dlib): Remove dependency on lapack. Change-Id: I1e230cef64f1a847bb44845ebf3f59e7f4704b7b --- gnu/packages/machine-learning.scm | 1 - 1 file changed, 1 deletion(-) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index e51877411d..4315d0d5b9 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -1650,7 +1650,6 @@ (define-public dlib libnsl)) (inputs `(("giflib" ,giflib) - ("lapack" ,lapack) ("libjpeg" ,libjpeg-turbo) ("libpng" ,libpng) ("libx11" ,libx11) From patchwork Mon Mar 11 11:07:15 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61638 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 295D427BBEA; Mon, 11 Mar 2024 11:11:24 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id BA66D27BBE2 for ; Mon, 11 Mar 2024 11:11:23 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYr-0006q5-BE; Mon, 11 Mar 2024 07:11:17 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXJ-0005xZ-N2 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:41 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXJ-0001WQ-F5 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:41 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXr-0002kC-7Z for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:15 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 34/41] gnu: grass: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:15 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015539010273 (code B ref 69729); Mon, 11 Mar 2024 11:10:15 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:50 +0000 Received: from localhost ([127.0.0.1]:39067 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdXS-0002fX-5s for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:50 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58344) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWp-0002Y1-Ed for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:12 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=kAED5ysrcAYZScKnwCVvHuXwvNooVeZo4nSIuNeZB3U=; b=iD8XfIkwoD+UmxeY+v9J+yTAUOdxKWTtWXqv5JH2OFR3GDMeiiVvg8So Gq0kMUadImgnqzqumSutiQAY/x3iB1f5p5mw6PwoJ6QQAxwTEiHWrCtFC gw3x4wKiqjegrmYZoQO+5Kvfurjd8waVBCoHXdxLSkZkO+s9m2zfbfYQX I=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786676" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:22 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:15 +0100 Message-ID: <20240311110750.16327-35-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/geo.scm (grass): Remove dependency on lapack. Add 'fix-lapack build phase. Change-Id: I758a9b2434f0ad9f8b85a5c5cde6d0a80e6defb2 --- gnu/packages/geo.scm | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm index 687effcace..6d3162b10d 100644 --- a/gnu/packages/geo.scm +++ b/gnu/packages/geo.scm @@ -2610,7 +2610,6 @@ (define-public grass ("gdal" ,gdal) ("geos" ,geos) ("glu" ,glu) - ("lapack" ,lapack) ("libpng" ,libpng) ("libtiff" ,libtiff) ("mesa" ,mesa) @@ -2644,6 +2643,11 @@ (define-public grass (guix build python-build-system)) #:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-lapack + (lambda _ + (substitute* "./configure" + (("-lblas") "-lopenblas") + (("-llapack") "-lopenblas")))) (replace 'configure (lambda* (#:key inputs outputs #:allow-other-keys) (let ((shell (search-input-file inputs "/bin/bash"))) From patchwork Mon Mar 11 11:07:16 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61664 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 3CE8127BBE9; Mon, 11 Mar 2024 11:22:19 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id B8C4B27BBE2 for ; Mon, 11 Mar 2024 11:22:17 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdip-0003Rb-SO; Mon, 11 Mar 2024 07:21:35 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdio-0003RC-UO for guix-patches@gnu.org; Mon, 11 Mar 2024 07:21:34 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdij-0004HO-79 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:21:29 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdjH-00035f-0b for guix-patches@gnu.org; Mon, 11 Mar 2024 07:22:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 35/41] gnu: harminv: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:22:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015608011774 (code B ref 69729); Mon, 11 Mar 2024 11:22:02 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:21:20 +0000 Received: from localhost ([127.0.0.1]:39129 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdiZ-00033k-Ij for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:21:19 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58339) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWp-0002Xe-Fn for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:12 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=++0gOoytRoUw0qR+X0QJtVGbDyLgq3QWNMLhe6SWoqo=; b=dHSfnJC07oXmzv+30oqq/T0fTZ9dwELOPPji8INn7wHMrO/bqnNZB7fI yyw4jBzioEEI5KccU+46XViyqta7gI29CfM9vcIkcXfq/n9Ws8FW8S4+X VwcmVm2dQnr7dX/KJaSYDfILEy6W7SO43XXa1FTcPpORNNd2Z4jJN/rvl Q=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786678" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:22 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:16 +0100 Message-ID: <20240311110750.16327-36-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/engineering.scm (harminv): Switch input dependency from lapack to openblas. Change-Id: Id6e85550f3559afde6732346e299486b3255cebe --- gnu/packages/engineering.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index d6552739c6..2eddc40f50 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -1616,7 +1616,7 @@ (define-public harminv (native-inputs `(("fortran" ,gfortran))) (inputs - (list lapack)) + (list openblas)) (home-page "https://github.com/stevengj/harminv") (synopsis "Harmonic inversion solver") (description From patchwork Mon Mar 11 11:07:17 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61632 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 0597227BBEA; Mon, 11 Mar 2024 11:10:43 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 8D06D27BBE2 for ; Mon, 11 Mar 2024 11:10:42 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdXu-00068K-9f; Mon, 11 Mar 2024 07:10:19 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXK-0005y0-7n for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:46 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXJ-0001WX-T7 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:41 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXr-0002kJ-Lw for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:15 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 36/41] gnu: giac: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:15 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015539110280 (code B ref 69729); Mon, 11 Mar 2024 11:10:15 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:51 +0000 Received: from localhost ([127.0.0.1]:39069 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdXS-0002fe-HM for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:50 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58345) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWp-0002Y7-Vc for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:12 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=+QeQCPncqaaAYfQVUvpaxsNFiNrCi9Mkg0imT5iyfxc=; b=nfs501oTBQKH3BoEkqIWoC9sn5kGrxaqZ9jnOTXkVOj0NawcRXQy1Kip F7noTjCR+8YahOgk6oOUXB8RUi9o7oMlSE+MGn8TRHl/OX0L7bfylvFOY CavPdOQGerUDqsE08EixcK57XMkLdGiDho6/1zV58gXT5/b/HnM0zGL/h M=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786680" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:22 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:17 +0100 Message-ID: <20240311110750.16327-37-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/algebra.scm (giac): Switch input dependency from lapack to openblas. Change-Id: I1ba95b5b606baf3192fdd3f651c9a74ab6e820c1 --- gnu/packages/algebra.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm index 90507ebd90..5ec47428fc 100644 --- a/gnu/packages/algebra.scm +++ b/gnu/packages/algebra.scm @@ -413,7 +413,6 @@ (define-public giac glpk-4 gmp gsl - lapack libjpeg-turbo libpng libsamplerate @@ -425,6 +424,7 @@ (define-public giac mpfi mpfr ntl + openblas pari-gp perl tcsh)) From patchwork Mon Mar 11 11:07:18 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61656 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id C042927BBE9; Mon, 11 Mar 2024 11:12:23 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 76D5E27BBE2 for ; Mon, 11 Mar 2024 11:12:22 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYr-0006ql-Sl; Mon, 11 Mar 2024 07:11:17 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXW-00062M-1D for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:54 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXK-0001Wi-CR for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:52 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXs-0002kR-5Q for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:16 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 37/41] gnu: libflame: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:16 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015539110288 (code B ref 69729); Mon, 11 Mar 2024 11:10:16 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:51 +0000 Received: from localhost ([127.0.0.1]:39071 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdXS-0002fl-R5 for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:51 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58348) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWq-0002Yk-10 for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:13 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=Nz78Ydz5ePGvqHiDa0ol9R0ptOimhatEF+teSdwgl0w=; b=hcYSFwgFUanJ+T40M8QsfrXgv1e1ARXb6UcLkcc6/HlWWLawN1unGg8Y Z8ZFPE506TacLYRfxLPwYd+aW3D7jWzOnzR430NM/CAwXsaCmPDPjDxjH 3yAc70/n+CuE3egvtPDFqyDQVEJrHfFsQgJBwj3YopHeu2ZbtI36HwzZy g=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786682" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:23 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:18 +0100 Message-ID: <20240311110750.16327-38-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (libflame): Switch input dependency from lapack to openblas. Change-Id: I7abdb8d126856488b0722b73c336309bf5c2234d --- gnu/packages/maths.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index c6d67a1bcb..3d955e7e18 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -2763,9 +2763,9 @@ (define-public libflame (lambda* (#:key tests? #:allow-other-keys) (substitute* "test/Makefile" (("LIBBLAS .*") - "LIBBLAS = -lblas\n") + "LIBBLAS = -lopenblas\n") (("LIBLAPACK .*") - "LIBLAPACK = -llapack\n")) + "LIBLAPACK = -lopenblas\n")) (when tests? (with-directory-excursion "test" (mkdir "obj") @@ -2784,7 +2784,7 @@ (define-public libflame "/include/FLAME.h") (string-append static "/include")))))))) (inputs (list gfortran)) - (native-inputs (list lapack perl python-wrapper)) + (native-inputs (list openblas perl python-wrapper)) (synopsis "High-performance library for @acronym{DLA, dense linear algebra} computations") (description "@code{libflame} is a portable library for dense matrix computations, providing much of the functionality present in LAPACK, developed From patchwork Mon Mar 11 11:07:19 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61650 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id D6D4E27BBEA; Mon, 11 Mar 2024 11:11:57 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 8487927BBE2 for ; Mon, 11 Mar 2024 11:11:57 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYq-0006ph-3B; Mon, 11 Mar 2024 07:11:16 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXW-00062K-08 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:54 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXL-0001Wm-PF for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:52 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXs-0002kY-Ik for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:16 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 38/41] gnu: lush2: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:16 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015539110295 (code B ref 69729); Mon, 11 Mar 2024 11:10:16 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:51 +0000 Received: from localhost ([127.0.0.1]:39073 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdXT-0002ft-78 for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:51 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58350) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWq-0002ZN-JV for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:13 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=+aOSblFrm3gOq2fc5l/njHglzdhKvvsvYavZdpNvXfc=; b=uNZH2yF86xhJv2TCv1S7QnlsLGFWfyE9vAGS2ed/cIb/Kf9B8FakNUXL FHiLGuP7dgBVbFVmDtfMQ7KDNTAzHbPV7WV7qEURR0nz9FQKBAfL/UTGd WYn2E3ZyN6E1JL14yIztajEfxG5FB1T1i2APiV9DPwLbY6cs8MBTz2YPr E=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786684" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:23 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:19 +0100 Message-ID: <20240311110750.16327-39-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/lisp.scm (lush2): Remove dependency on lapack. Change-Id: Idb7734e93021d6be9f65a5a0f9c4da4581786aee --- gnu/packages/lisp.scm | 1 - 1 file changed, 1 deletion(-) diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm index c58e56b7a7..ecc22107aa 100644 --- a/gnu/packages/lisp.scm +++ b/gnu/packages/lisp.scm @@ -874,7 +874,6 @@ (define-public lush2 ("sdl-mixer" ,sdl-mixer) ("sdl-net" ,sdl-net) ("sdl-ttf" ,sdl-ttf) - ("lapack" ,lapack) ("libxft" ,libxft) ("fontconfig" ,fontconfig) ("gsl" ,gsl) From patchwork Mon Mar 11 11:07:20 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61643 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5895F27BBE2; Mon, 11 Mar 2024 11:11:35 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 585C827BBEA for ; Mon, 11 Mar 2024 11:11:34 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYj-0006fc-KK; Mon, 11 Mar 2024 07:11:09 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXV-00062J-Vb for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:54 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXL-0001Wu-I7 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:52 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXt-0002kn-Aj for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:17 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 39/41] gnu: shogun: Switch to openblas. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:17 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015539210309 (code B ref 69729); Mon, 11 Mar 2024 11:10:17 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:52 +0000 Received: from localhost ([127.0.0.1]:39077 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdXT-0002g7-Qx for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:52 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58347) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWq-0002YQ-OA for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:14 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=FoJeD5zab22pfYYzeJ7etGL8KTKSq2aA0b1huUdyzIA=; b=huLVaR1Zm+1Omi0xjojrFwOoPVRpukgGJHz2kfweamM+Icl09BSw2fcj nOmhLCnL1xIZkCYDunGT2TePaxWZODT8oScwxW89MPSpyUMpa1DdMJ74V 9G91ytLDF3BQbzG8Ot4jREx7kdrnu2czldU0tNCi7IeEeECX05YTL8FZt k=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786687" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:23 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:20 +0100 Message-ID: <20240311110750.16327-40-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/machine-learning.scm (shogun): Switch from lapack to openblas dependency. Change-Id: Ib8dde7d9ed9df4bda0eab945f3098a28d0e5927b --- gnu/packages/machine-learning.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 4315d0d5b9..005ae0a8d5 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -1255,7 +1255,7 @@ (define (delete-ifdefs file) ("hdf5" ,hdf5) ("atlas" ,atlas) ("arpack" ,arpack-ng) - ("lapack" ,lapack) + ("openblas" ,openblas) ("glpk" ,glpk) ("libxml2" ,libxml2) ("lzo" ,lzo) From patchwork Mon Mar 11 11:07:21 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61654 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 9D44E27BBE9; Mon, 11 Mar 2024 11:12:15 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 7035627BBE2 for ; Mon, 11 Mar 2024 11:12:14 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdYq-0006pl-9Z; Mon, 11 Mar 2024 07:11:16 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdXW-00062L-1w for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:54 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdXM-0001Wv-1B for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:52 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdXt-0002ku-Qc for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:17 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 40/41] gnu: kaldi-for-vosk: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:10:17 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015539210316 (code B ref 69729); Mon, 11 Mar 2024 11:10:17 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:09:52 +0000 Received: from localhost ([127.0.0.1]:39079 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdXU-0002gE-4h for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:52 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58344) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWq-0002Y1-VO for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:14 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=WD5Hs25NZn7zlJV36qqz+zgjrc1NBMKcUrR4LOaS0gA=; b=J2Ru40qVi+izuam0ItPawkIAlEALJU1CjzeUUjlRktWYzoyJxMxUyPDW /A8KG7EXNp8n8ohPyzQ7rJNuZEONz8J+4X8vutcwk9Ap3XyTGP7EhPZDy GPXNXQSlmcELR4Z+notergld/vkarONsNOJNM9XGhacI/ojq4QZ2XsU/4 E=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786689" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:23 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:21 +0100 Message-ID: <20240311110750.16327-41-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/machine-learning.scm (kaldi-for-vosk): Remove dependency to lapack. Change-Id: I0f5f508288ccb2e7fd086aabeffb5b0b4d3f96b2 --- gnu/packages/machine-learning.scm | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 005ae0a8d5..aa375b0c34 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -2517,7 +2517,6 @@ (define kaldi-for-vosk (base32 "16w90za8narkfi590cxj4p7vc1f5sdxc927g5hk6kh4l3mf6iisl")))) (inputs (list alsa-lib - lapack ;compared to base kaldi, replacing `(,gfortran "lib") glib gstreamer jack-2 @@ -2536,7 +2535,6 @@ (define kaldi-for-vosk (replace 'configure (lambda _ (let ((portaudio #$(this-package-input "portaudio")) - (lapack #$(this-package-input "lapack")) (openfst #$(this-package-input "openfst")) (openblas #$(this-package-input "openblas"))) #$@(if (target-x86?) @@ -2570,7 +2568,7 @@ (define kaldi-for-vosk (string-append "OPENBLASROOT=\"" openblas "\"")) (("-L\\$OPENBLASLIBDIR -l:libopenblas.a -l:libblas.a -l:liblapack.a -l:libf2c.a") (string-append "-L$OPENBLASLIBDIR -lopenblas " - "-L" lapack "/lib -lblas -llapack"))) + "-L" openblas "/lib -lopenblas"))) (mkdir-p #$output) ; must exist (setenv "CONFIG_SHELL" (which "bash")) (setenv "OPENFST_VER" #$(package-version openfst)) From patchwork Mon Mar 11 11:07:22 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Romain GARBAGE X-Patchwork-Id: 61663 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id CAD6D27BBE9; Mon, 11 Mar 2024 11:22:16 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id AAC4B27BBE2 for ; Mon, 11 Mar 2024 11:22:15 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjdir-0003Rd-3v; Mon, 11 Mar 2024 07:21:37 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjdio-0003RE-VR for guix-patches@gnu.org; Mon, 11 Mar 2024 07:21:34 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjdij-0004HT-KF for guix-patches@gnu.org; Mon, 11 Mar 2024 07:21:34 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjdjH-00035m-Cf for guix-patches@gnu.org; Mon, 11 Mar 2024 07:22:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 41/41] gnu: ocaml-lacaml: Remove dependency on lapack. Resent-From: Romain GARBAGE Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 11:22:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69729@debbugs.gnu.org Cc: Romain GARBAGE Received: via spool by 69729-submit@debbugs.gnu.org id=B69729.171015608011781 (code B ref 69729); Mon, 11 Mar 2024 11:22:03 +0000 Received: (at 69729) by debbugs.gnu.org; 11 Mar 2024 11:21:20 +0000 Received: from localhost ([127.0.0.1]:39131 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdia-00033r-03 for submit@debbugs.gnu.org; Mon, 11 Mar 2024 07:21:20 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:58339) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rjdWr-0002Xe-8s for 69729@debbugs.gnu.org; Mon, 11 Mar 2024 07:09:14 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:date:message-id:in-reply-to: references:mime-version:content-transfer-encoding; bh=sgxXTNjESC+Pr4CvlVOZ1cDSB8EwZoxvY1oMu0c+Yzg=; b=skGfn7qbutxBENZlThylkwWEVFEasyAMVQp+Oxofz5TkKLVW4tRebnX3 CqJjpHFVbP7iejL9iu9FNC65SUdvxPLJASG4oEqA1SMrxsyFhEg613oPH 77gIUkn6KZUBagVgzh6EkgtGxE67aocrq8Pel+Fy8eNHlpN89ct3ZCu4b o=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=romain.garbage@inria.fr; spf=None smtp.helo=postmaster@guix-A102.bordeaux.inria.fr Received-SPF: SoftFail (mail3-relais-sop.national.inria.fr: domain of romain.garbage@inria.fr is inclined to not designate 193.50.110.70 as permitted sender) identity=mailfrom; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="romain.garbage@inria.fr"; x-conformance=spf_only; x-record-type="v=spf1"; x-record-text="v=spf1 include:mailout.safebrands.com a:basic-mail.safebrands.com a:basic-mail01.safebrands.com a:basic-mail02.safebrands.com ip4:128.93.142.0/24 ip4:192.134.164.0/24 ip4:128.93.162.160 ip4:89.107.174.7 mx ~all" Received-SPF: None (mail3-relais-sop.national.inria.fr: no sender authenticity information available from domain of postmaster@guix-A102.bordeaux.inria.fr) identity=helo; client-ip=193.50.110.70; receiver=mail3-relais-sop.national.inria.fr; envelope-from="romain.garbage@inria.fr"; x-sender="postmaster@guix-A102.bordeaux.inria.fr"; x-conformance=spf_only X-IronPort-AV: E=Sophos;i="6.07,116,1708383600"; d="scan'208";a="81786691" Received: from unknown (HELO guix-A102.bordeaux.inria.fr) ([193.50.110.70]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 11 Mar 2024 12:08:23 +0100 From: Romain GARBAGE Date: Mon, 11 Mar 2024 12:07:22 +0100 Message-ID: <20240311110750.16327-42-romain.garbage@inria.fr> X-Mailer: git-send-email 2.41.0 In-Reply-To: <20240311110750.16327-2-romain.garbage@inria.fr> References: <20240311110750.16327-2-romain.garbage@inria.fr> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/ocaml.scm (ocaml-lacaml): Remove dependency on lapack. Change-Id: If3100fc29088110705e13e9be97abb7739f2fcab --- gnu/packages/ocaml.scm | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/gnu/packages/ocaml.scm b/gnu/packages/ocaml.scm index 0f4c351141..a45b2d3592 100644 --- a/gnu/packages/ocaml.scm +++ b/gnu/packages/ocaml.scm @@ -8344,9 +8344,14 @@ (define-public ocaml-lacaml (properties '((tunable? . #t))) (build-system dune-build-system) (arguments - `(#:tests? #f)) ; No test target. + (list #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'find-openblas + (lambda* _ + (setenv "LACAML_LIBS" "-lopenblas")))) + #:tests? #f)) ; No test target. (native-inputs - (list openblas lapack ocaml-base ocaml-stdio)) + (list openblas ocaml-base ocaml-stdio)) (home-page "https://mmottl.github.io/lacaml/") (synopsis "OCaml-bindings to BLAS and LAPACK")