From patchwork Tue Nov 12 19:15:30 2019 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 16100 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 0DBFF17739; Tue, 12 Nov 2019 19:16:23 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00,FREEMAIL_FROM, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id BD59B17739 for ; Tue, 12 Nov 2019 19:16:22 +0000 (GMT) Received: from localhost ([::1]:39088 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iUbeH-0002sr-RE for patchwork@mira.cbaines.net; Tue, 12 Nov 2019 14:16:21 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:46007) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iUbdz-0002sX-Uo for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:05 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1iUbdy-0004ij-P8 for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:49583) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1iUbdy-0004id-LN for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1iUbdy-00081x-FU for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#38184] [PATCH 1/4] gnu: r-quadprog: Move to (gnu packages cran). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 12 Nov 2019 19:16:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 38184 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 38184@debbugs.gnu.org Cc: zimoun Received: via spool by 38184-submit@debbugs.gnu.org id=B38184.157358614830808 (code B ref 38184); Tue, 12 Nov 2019 19:16:02 +0000 Received: (at 38184) by debbugs.gnu.org; 12 Nov 2019 19:15:48 +0000 Received: from localhost ([127.0.0.1]:58394 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iUbdk-00080p-0n for submit@debbugs.gnu.org; Tue, 12 Nov 2019 14:15:48 -0500 Received: from mail-wr1-f44.google.com ([209.85.221.44]:37086) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iUbdh-00080P-Vq for 38184@debbugs.gnu.org; Tue, 12 Nov 2019 14:15:46 -0500 Received: by mail-wr1-f44.google.com with SMTP id t1so19818917wrv.4 for <38184@debbugs.gnu.org>; Tue, 12 Nov 2019 11:15:45 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=5K3x0OEkfOOXNzT5gfynbfWIU/b1PFWDvGMIAuYoTCk=; b=mXfGvBKDElw6uuHBQlFDlP/SK96RKqHBo3HIoEvoki75mhYrr6MGioakwSLQPKa6wH 8r2jLzIH9NXs5FTzVhyRjVW9Y6hkeorO+ULVRd7CeMKxHNU3/XohWOUfyhYXUPOUCnyS hZh2s2ZkSPV2z95r8wQfyeeoCFLY6gafJAqueQP7Ziw6itZXcV/5qk/QoY55u0dVL2pL z2lkHumB2WVsAcYZwHd7zJY5M2+/8xl/RUIZyceT6xzMm2CnYbzqDbzfbcVKXwKuoqwf FkWT5SuXOpUnPdiZG3LzRxM4SM8mjyoLBk66LkOpH41oBvI5podSF4juHAsjjjNnavXc mdwA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=5K3x0OEkfOOXNzT5gfynbfWIU/b1PFWDvGMIAuYoTCk=; b=TIwN98sCGe+8NaZ06oCmdjyNUEvvN8y4mYMg0ObBQYQYs2zE6+Y8YL/6T9qc8AovYQ XVwSOtczgrV9Ebjti6Z7POLC4gI6jiQQrTYZHA8ZVVYv+QzvxWYnrptY9AWqsLO2bnDZ OEhHkcXUc4micN13IIwT9GOFqTJz4tBLADNgOdeOd8FNFH1COy7jZQo1Cq+gF38942P1 XUVlgRaEptEagQY271e2C0JvBE5vqDxmIZrp55yrvbCCrgP/LkygM0vOuXh3MwoW49sK yH3UNSdADZTZARNV/jtXGPU0BbkYNSr8bexDvBZ/Tc6R/J0u0bt6HwXVMaviu4FTnXG1 oXDQ== X-Gm-Message-State: APjAAAWknPzumDUl/DRnDAotna8uL2BBiSPx417pOQkhhsMkoo7AiQdS UnMpVGUhli4xzHmMkARQeu4yE/Mf X-Google-Smtp-Source: APXvYqzTJpOpz4hNsWHOi0BGx2mUvijJ8IS3ykb7NHJ4PBpBEFL7YGCljgpt4wS0ALnG7O0lizosxg== X-Received: by 2002:adf:f10d:: with SMTP id r13mr12313870wro.173.1573586140032; Tue, 12 Nov 2019 11:15:40 -0800 (PST) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id d13sm20254262wrq.51.2019.11.12.11.15.39 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 12 Nov 2019 11:15:39 -0800 (PST) From: zimoun Date: Tue, 12 Nov 2019 20:15:30 +0100 Message-Id: <20191112191533.32371-2-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.23.0 In-Reply-To: <20191112191533.32371-1-zimon.toutoune@gmail.com> References: <20191112191533.32371-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (r-quadprog): Move from here... * gnu/packages/cran.scm (r-quadprog): ...to here. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ gnu/packages/maths.scm | 21 --------------------- 2 files changed, 21 insertions(+), 21 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4662680b19..67959c9280 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -15645,3 +15645,24 @@ unique identifiers, and whether it is a certain length. In addition, files and to efficiently import multiple tabular data files into one data.table.") (license license:gpl3))) + +(define-public r-quadprog + (package + (name "r-quadprog") + (version "1.5-7") + (source + (origin + (method url-fetch) + (uri (cran-uri "quadprog" version)) + (sha256 + (base32 + "0vg7i9p241bwvfdspjbydjrsvgipl6nsb8bjigp0hbbgvxbixx0s")))) + (build-system r-build-system) + (native-inputs + `(("gfortran" ,gfortran))) + (home-page "https://cran.r-project.org/web/packages/quadprog") + (synopsis "Functions to solve quadratic programming problems") + (description + "This package contains routines and documentation for solving quadratic +programming problems.") + (license license:gpl3+))) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 16a9d97a47..a4452af93e 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -2341,27 +2341,6 @@ sparse system of linear equations A x = b using Gaussian elimination.") (inputs (alist-delete "pt-scotch" (package-inputs mumps-openmpi))))) -(define-public r-quadprog - (package - (name "r-quadprog") - (version "1.5-7") - (source - (origin - (method url-fetch) - (uri (cran-uri "quadprog" version)) - (sha256 - (base32 - "0vg7i9p241bwvfdspjbydjrsvgipl6nsb8bjigp0hbbgvxbixx0s")))) - (build-system r-build-system) - (native-inputs - `(("gfortran" ,gfortran))) - (home-page "https://cran.r-project.org/web/packages/quadprog") - (synopsis "Functions to solve quadratic programming problems") - (description - "This package contains routines and documentation for solving quadratic -programming problems.") - (license license:gpl3+))) - (define-public r-pracma (package (name "r-pracma") From patchwork Tue Nov 12 19:15:31 2019 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 16103 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id A19441773D; Tue, 12 Nov 2019 19:16:33 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00,FREEMAIL_FROM, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id 4D10E17739 for ; Tue, 12 Nov 2019 19:16:33 +0000 (GMT) Received: from localhost ([::1]:39094 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iUbeS-00036A-GX for patchwork@mira.cbaines.net; Tue, 12 Nov 2019 14:16:32 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:46033) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iUbe3-0002tO-EC for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:08 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1iUbe1-0004k4-NT for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:07 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:49585) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1iUbe1-0004jt-Js for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:05 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1iUbdz-00082N-CV for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:05 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#38184] [PATCH 2/4] gnu: r-pracma: Move to (gnu packages cran). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 12 Nov 2019 19:16:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 38184 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 38184@debbugs.gnu.org Cc: zimoun Received: via spool by 38184-submit@debbugs.gnu.org id=B38184.157358615130835 (code B ref 38184); Tue, 12 Nov 2019 19:16:03 +0000 Received: (at 38184) by debbugs.gnu.org; 12 Nov 2019 19:15:51 +0000 Received: from localhost ([127.0.0.1]:58400 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iUbdm-00081B-W1 for submit@debbugs.gnu.org; Tue, 12 Nov 2019 14:15:51 -0500 Received: from mail-wr1-f44.google.com ([209.85.221.44]:41077) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iUbdj-00080S-FA for 38184@debbugs.gnu.org; Tue, 12 Nov 2019 14:15:47 -0500 Received: by mail-wr1-f44.google.com with SMTP id p4so19791033wrm.8 for <38184@debbugs.gnu.org>; Tue, 12 Nov 2019 11:15:47 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=PCOmM+Zs+qLWRXR1AZT88VQ1T6hCIEQtDLnK8E01pQg=; b=kLVHSsGnhBcuoIfrzL0+/7jXOnt+JVGs+Wb196vPBzb++UjqnClLqiLJAEiWr7QXbW ZjRxeguVvaIO70SME9TgUV2Jm8Z/bJksbTzDQ7Gqn/i/+PaFbVcNKdsOlan5RzPxa0C9 4o6tJ4evB+Rc/AOVdg/ujes/HPTV7D8XJuzhRka9mVGqGOp/8lHh4u70LSWvT7UMwGzG AtilnSvoAwXnZFjhCIj5wWzcmNVHeg0ND2SG/ZTrNVagkeB5PtCFxL8n4KvB4RNYIS1Z 26qh6Oz/Cj3uFo7jdCGI3XibrVazDULvBSB7aqKviIEv0eXyU4PZVGVVmANOQI6h8D+o CnlA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=PCOmM+Zs+qLWRXR1AZT88VQ1T6hCIEQtDLnK8E01pQg=; b=gl4A0lF7sQJO1+9l0HOw1kjtn3yWqjPZOqnaPZkKVKYkGuq0935HT6OAO9eY7v8r5j ejDAq9rU5kp12LuS6MDC32VR2ip5v8PS45XC0xrY1ieFtoGKX16IobdS6lEPaTkaUUPt skvAvOihtZ4/2XrkLV5xct4cyQzT2eYXoYuuwMwb/AVDGxU4LMXbQnM3FzMmwz79LlgF CL73xdY5xwB+w8p9igPdlzZkUwI8L+rbTEBmRP7jwckyx9trR2NfE0fj3YQcBKggY9l/ tAfeHXkwdtlA0LLhJQxwVmfrmAKO0rhPIzSyz+MTcvdtmGKbqnD85VSs6cbkpo5iCdyj Ux8Q== X-Gm-Message-State: APjAAAVsXdf2cVgQ5WQq67tYPz3uVrbRdKgtUKKzYttbcO85XdFoLS8g yYNTRd5jwwXst2mQED/2iFa6CpHu X-Google-Smtp-Source: APXvYqw3wk3bROgvRTN3W4stqGzY2c4bvR0uoO66HguQmt//8UtecT8CALyOOqRhNFB0jUL25k8ojA== X-Received: by 2002:adf:e74e:: with SMTP id c14mr15280294wrn.124.1573586141638; Tue, 12 Nov 2019 11:15:41 -0800 (PST) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id d13sm20254262wrq.51.2019.11.12.11.15.40 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 12 Nov 2019 11:15:40 -0800 (PST) From: zimoun Date: Tue, 12 Nov 2019 20:15:31 +0100 Message-Id: <20191112191533.32371-3-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.23.0 In-Reply-To: <20191112191533.32371-1-zimon.toutoune@gmail.com> References: <20191112191533.32371-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (r-pracma): Move from here... * gnu/packages/cran.scm (r-pracma): ...to here. --- gnu/packages/cran.scm | 23 ++++++++++++++++++++++- gnu/packages/maths.scm | 18 ------------------ 2 files changed, 22 insertions(+), 19 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 67959c9280..ed416c4a8e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus ;;; Copyright © 2016, 2017 Ben Woodcroft -;;; Copyright © 2017, 2018 Roel Janssen +;;; Copyright © 2016, 2017, 2018 Roel Janssen ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice ;;; Copyright © 2017 Raoul Bonnal ;;; Copyright © 2018 Vijayalakshmi Vedantham @@ -15666,3 +15666,24 @@ data.table.") "This package contains routines and documentation for solving quadratic programming problems.") (license license:gpl3+))) + +(define-public r-pracma + (package + (name "r-pracma") + (version "2.2.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "pracma" version)) + (sha256 + (base32 + "0isd3s0i4mzmva8lkh0j76hwjy1w50q7d1n9lhxsnnkgalx3xs1g")))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/pracma/") + (synopsis "Practical numerical math functions") + (description + "This package provides functions for numerical analysis and +linear algebra, numerical optimization, differential equations, plus some +special functions. It uses Matlab function names where appropriate to simplify +porting.") + (license license:gpl3+))) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index a4452af93e..3565b99e05 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -2341,24 +2341,6 @@ sparse system of linear equations A x = b using Gaussian elimination.") (inputs (alist-delete "pt-scotch" (package-inputs mumps-openmpi))))) -(define-public r-pracma - (package - (name "r-pracma") - (version "2.2.5") - (source (origin - (method url-fetch) - (uri (cran-uri "pracma" version)) - (sha256 - (base32 "0isd3s0i4mzmva8lkh0j76hwjy1w50q7d1n9lhxsnnkgalx3xs1g")))) - (build-system r-build-system) - (home-page "https://cran.r-project.org/web/packages/pracma/") - (synopsis "Practical numerical math functions") - (description "This package provides functions for numerical analysis and -linear algebra, numerical optimization, differential equations, plus some -special functions. It uses Matlab function names where appropriate to simplify -porting.") - (license license:gpl3+))) - (define-public ruby-asciimath (package (name "ruby-asciimath") From patchwork Tue Nov 12 19:15:32 2019 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 16102 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 6E2EE1773F; Tue, 12 Nov 2019 19:16:27 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00,FREEMAIL_FROM, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id 0225217739 for ; Tue, 12 Nov 2019 19:16:27 +0000 (GMT) Received: from localhost ([::1]:39092 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iUbeL-0002xK-TF for patchwork@mira.cbaines.net; Tue, 12 Nov 2019 14:16:25 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:46036) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iUbe3-0002te-IY for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:08 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1iUbe2-0004kL-7g for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:07 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:49586) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1iUbe2-0004kE-3P for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:06 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1iUbe1-00082X-Ru for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:05 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#38184] [PATCH 3/4] gnu: r-subplex: Move to (gnu packages cran). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 12 Nov 2019 19:16:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 38184 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 38184@debbugs.gnu.org Cc: zimoun Received: via spool by 38184-submit@debbugs.gnu.org id=B38184.157358615230843 (code B ref 38184); Tue, 12 Nov 2019 19:16:05 +0000 Received: (at 38184) by debbugs.gnu.org; 12 Nov 2019 19:15:52 +0000 Received: from localhost ([127.0.0.1]:58402 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iUbdn-00081I-Gr for submit@debbugs.gnu.org; Tue, 12 Nov 2019 14:15:51 -0500 Received: from mail-wr1-f67.google.com ([209.85.221.67]:39207) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iUbdl-00080V-L1 for 38184@debbugs.gnu.org; Tue, 12 Nov 2019 14:15:50 -0500 Received: by mail-wr1-f67.google.com with SMTP id l7so8236447wrp.6 for <38184@debbugs.gnu.org>; Tue, 12 Nov 2019 11:15:49 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=RTxfA6apr5Z0TFOyF511R4t4kQMthGYgMzZEdfi/kv8=; b=o0+lu+j/qhVwBwFIp3Z5goZaKFCB9g4+cqzYNPEfXXtuyRZaKYIFOrUCScxbyjqBcq L0PaRQ/ZIHc4JbwUyN3tCFH0Gh7cWs5+bRwM8ZZw0wwaLeYCgBQF4T/Mr2DYgrrS68Qi DbKR03dk/k68uGMuHesPyg1fVZfcBelKkL/zoBGB8BZ48GDOEt/QWNdzOsnSHLpQInae l9KDREZVhk0ZhxM1TX/XNmKV39fCoGe8O6muKc+xjjNHePg6yh6AtCFK+RH5e897XQI+ gzWIkI+JRojaH4v+O0FUO7i07F12jbEp1PTM0bdg1kXwkT8I/rOWJMAK0i7Sz2aeCtf4 2PMg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=RTxfA6apr5Z0TFOyF511R4t4kQMthGYgMzZEdfi/kv8=; b=OSp5Yvirb7DXY5Noocj+JSlpTL+WyeGH/CPKPqRKoZL9YUXP1oLH5ij1tX28VE51mO ef6Ke6FtcgnWDNBBYcHt/1YFGN/f6qNLFmraSTqWSU+zA9i9rIAqk/yNjmklyo41Wsvn Jw33tPIY52EIhJYXO5FArIS0ZXGQtWcge2HBx53L2fCEltuYki0MkmfwLDWkYtCNSA46 zymMponj7rpDJDpYjqoXmQcg8T6egP5Y0+IdlKeKRx1Z8K2l7m/pmaNv1Kb+1B8Q31Q1 npV88oJ7muzVVjkvBb66t1FmJwhEVt1lbSgPdGFkwI+C1bvStjzmSHUVdAOBXoICixVV fOVQ== X-Gm-Message-State: APjAAAU7xVqeQkyaM1Oh6xD7MAvfy3WuePS1CV4RXTh0EJkcvwzddsQt 8bD1WivXNRiUuPn9b1d49S1vjWcf X-Google-Smtp-Source: APXvYqz6wK+wB6+L1d62uXlJyGjFa7dnX9WNKSkaQrXhq4iC4MtGNURRn2095xDK/0YM80pRoueDPA== X-Received: by 2002:a05:6000:103:: with SMTP id o3mr29332143wrx.80.1573586143685; Tue, 12 Nov 2019 11:15:43 -0800 (PST) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id d13sm20254262wrq.51.2019.11.12.11.15.41 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 12 Nov 2019 11:15:41 -0800 (PST) From: zimoun Date: Tue, 12 Nov 2019 20:15:32 +0100 Message-Id: <20191112191533.32371-4-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.23.0 In-Reply-To: <20191112191533.32371-1-zimon.toutoune@gmail.com> References: <20191112191533.32371-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (r-subplex): Move from here... * gnu/packages/cran.scm (r-subplex): ...to here. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ gnu/packages/maths.scm | 22 ---------------------- 2 files changed, 23 insertions(+), 22 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ed416c4a8e..48ddaadd8d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -15687,3 +15687,26 @@ linear algebra, numerical optimization, differential equations, plus some special functions. It uses Matlab function names where appropriate to simplify porting.") (license license:gpl3+))) + +(define-public r-subplex + (package + (name "r-subplex") + (version "1.5-4") + (source + (origin + (method url-fetch) + (uri (cran-uri "subplex" version)) + (sha256 + (base32 + "10cbgbx1bgsax5z7gz6716g360xpq4mvq19cf4qqrxv02mmwz57z")))) + (build-system r-build-system) + (native-inputs + `(("gfortran" ,gfortran))) + (home-page "https://cran.r-project.org/web/packages/subplex") + (synopsis "Unconstrained optimization using the subplex algorithm") + (description + "This package implements the Subplex optimization algorithm. +It solves unconstrained optimization problems using a simplex method on +subspaces. The method is well suited for optimizing objective functions that +are noisy or are discontinuous at the solution.") + (license license:gpl3+))) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 3565b99e05..77bd5d246b 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -4343,28 +4343,6 @@ analysed.") (arguments '(#:configure-flags '("-DMCRL2_ENABLE_GUI_TOOLS=OFF"))))) -(define-public r-subplex - (package - (name "r-subplex") - (version "1.5-4") - (source - (origin - (method url-fetch) - (uri (cran-uri "subplex" version)) - (sha256 - (base32 - "10cbgbx1bgsax5z7gz6716g360xpq4mvq19cf4qqrxv02mmwz57z")))) - (build-system r-build-system) - (native-inputs - `(("gfortran" ,gfortran))) - (home-page "https://cran.r-project.org/web/packages/subplex") - (synopsis "Unconstrained optimization using the subplex algorithm") - (description "This package implements the Subplex optimization algorithm. -It solves unconstrained optimization problems using a simplex method on -subspaces. The method is well suited for optimizing objective functions that -are noisy or are discontinuous at the solution.") - (license license:gpl3+))) - (define-public r-desolve (package (name "r-desolve") From patchwork Tue Nov 12 19:15:33 2019 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 16104 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id E0EAA1773C; Tue, 12 Nov 2019 19:16:33 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00,FREEMAIL_FROM, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id 94E441773A for ; Tue, 12 Nov 2019 19:16:33 +0000 (GMT) Received: from localhost ([::1]:39096 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iUbeS-00036Y-KH for patchwork@mira.cbaines.net; Tue, 12 Nov 2019 14:16:32 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:46069) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iUbe9-0002yc-PF for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:15 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1iUbe6-0004mL-5W for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:12 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:49587) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1iUbe6-0004mB-2g for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:10 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1iUbe2-00082e-EA for guix-patches@gnu.org; Tue, 12 Nov 2019 14:16:09 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#38184] [PATCH 4/4] gnu: r-desolve: Move to (gnu packages cran). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 12 Nov 2019 19:16:06 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 38184 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 38184@debbugs.gnu.org Cc: zimoun Received: via spool by 38184-submit@debbugs.gnu.org id=B38184.157358615630854 (code B ref 38184); Tue, 12 Nov 2019 19:16:06 +0000 Received: (at 38184) by debbugs.gnu.org; 12 Nov 2019 19:15:56 +0000 Received: from localhost ([127.0.0.1]:58404 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iUbds-00081Z-0n for submit@debbugs.gnu.org; Tue, 12 Nov 2019 14:15:56 -0500 Received: from mail-wm1-f44.google.com ([209.85.128.44]:35804) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iUbdm-00080X-PV for 38184@debbugs.gnu.org; Tue, 12 Nov 2019 14:15:51 -0500 Received: by mail-wm1-f44.google.com with SMTP id 8so4213212wmo.0 for <38184@debbugs.gnu.org>; Tue, 12 Nov 2019 11:15:50 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=ywINN198rxn2yfi46q1CpKS6GNmtcx+FBauPkZAGYFo=; b=XwUfOYu/36mfOXxvj8Zmsew8vXjBUjvpLtAwsEPzJeJx7q0go+bxJjTVtBK3i60kXl 8+4XIzHuHJZwTBaw/2d0AVewPaZS8XJ17raO9bNRiNCAXcEsaL4dTMqX3jEVpnSaJwhf T55gEtWst6B5UoRo6ba187QOBNl9Em4zULEqDikz1/Clklzn6wKv52sxdpTE++MDMYCb HhEnEFLi7dA4B9MdYE1SdrsqApIBCCyHaQRMNQ7XoEoAFv3gixwB4L9RDcCSRpkeBdQb 7MuYJrneECPV+L1E//JtM0VqUTm8kqpfdPRPl9PpN5kkumTSwS1wscM+6bRhNDBsPfYQ P//w== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=ywINN198rxn2yfi46q1CpKS6GNmtcx+FBauPkZAGYFo=; b=MDs3NvASurDoIy8wF4PQXlI7t4ksPpsCickLBQjGrRBadAJ0nY+JQgkTT4xC/kAfHU 12vkE7QWGKmM4HDVJdb0WIHHMn05lkfxKYdYMmaRXwwgi3YhPn6a+EuOeY5X+aIvqbL1 gGO8x3IOYKrowpamu4Zee7CNs90oMlDcgd8o1Ra2cbTZ4rlz4arMwpHKzI0jK6mZwETo kmaNr8KaghQvrKgx9m7FkfW7ef5UUumSMG/wVIA1kQ/xhTkkjrgnNGsReE+vi4Y+n0pt Pyiqh7KdHfmfOoD/k2op7w/TgHnMgXctkHK30OZVe8q8vxVyUuvz9grYobds5qH4kc6e eXNA== X-Gm-Message-State: APjAAAXzptoshgXpGm4Kum4zFfvgnM9Zn6GLLYbAB6JQXdHRqy9v9q5H ElbjzZTsdTxM+22aDQZzaSlB4RWd X-Google-Smtp-Source: APXvYqxVoRdU1VzwTPY56NMkCZGcyjV05CjyODTU3pNcoVOulq/YSlmZjntkLxKHUUi5arH94uBzQQ== X-Received: by 2002:a05:600c:295:: with SMTP id 21mr5245164wmk.43.1573586144574; Tue, 12 Nov 2019 11:15:44 -0800 (PST) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id d13sm20254262wrq.51.2019.11.12.11.15.43 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 12 Nov 2019 11:15:43 -0800 (PST) From: zimoun Date: Tue, 12 Nov 2019 20:15:33 +0100 Message-Id: <20191112191533.32371-5-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.23.0 In-Reply-To: <20191112191533.32371-1-zimon.toutoune@gmail.com> References: <20191112191533.32371-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (r-desolve): Move from here... * gnu/packages/cran.scm (r-desolve): ...to here. --- gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++ gnu/packages/maths.scm | 29 ----------------------------- 2 files changed, 30 insertions(+), 29 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 48ddaadd8d..c62b8eb730 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -15710,3 +15710,33 @@ It solves unconstrained optimization problems using a simplex method on subspaces. The method is well suited for optimizing objective functions that are noisy or are discontinuous at the solution.") (license license:gpl3+))) + +(define-public r-desolve + (package + (name "r-desolve") + (version "1.24") + (source + (origin + (method url-fetch) + (uri (cran-uri "deSolve" version)) + (sha256 + (base32 + "0hkvspq0fp8j64l9zayab2l2nazazhwfgfym0jllh0xv5a12r99s")))) + (properties `((upstream-name . "deSolve"))) + (build-system r-build-system) + (native-inputs + `(("gfortran" ,gfortran))) + (home-page "https://desolve.r-forge.r-project.org/") + (synopsis "Solvers for initial value problems of differential equations") + (description + "This package provides functions that solve initial +value problems of a system of first-order ordinary differential equations (ODE), +of partial differential equations (PDE), of differential algebraic equations +(DAE), and of delay differential equations. The functions provide an interface +to the FORTRAN functions lsoda, lsodar, lsode, lsodes of the ODEPACK collection, +to the FORTRAN functions dvode and daspk and a C-implementation of solvers of +the Runge-Kutta family with fixed or variable time steps. The package contains +routines designed for solving ODEs resulting from 1-D, 2-D and 3-D partial +differential equations (PDE) that have been converted to ODEs by numerical +differencing.") + (license license:gpl2+))) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 77bd5d246b..80645f47b9 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -4343,35 +4343,6 @@ analysed.") (arguments '(#:configure-flags '("-DMCRL2_ENABLE_GUI_TOOLS=OFF"))))) -(define-public r-desolve - (package - (name "r-desolve") - (version "1.24") - (source - (origin - (method url-fetch) - (uri (cran-uri "deSolve" version)) - (sha256 - (base32 - "0hkvspq0fp8j64l9zayab2l2nazazhwfgfym0jllh0xv5a12r99s")))) - (properties `((upstream-name . "deSolve"))) - (build-system r-build-system) - (native-inputs - `(("gfortran" ,gfortran))) - (home-page "https://desolve.r-forge.r-project.org/") - (synopsis "Solvers for initial value problems of differential equations") - (description "This package provides functions that solve initial -value problems of a system of first-order ordinary differential equations (ODE), -of partial differential equations (PDE), of differential algebraic equations -(DAE), and of delay differential equations. The functions provide an interface -to the FORTRAN functions lsoda, lsodar, lsode, lsodes of the ODEPACK collection, -to the FORTRAN functions dvode and daspk and a C-implementation of solvers of -the Runge-Kutta family with fixed or variable time steps. The package contains -routines designed for solving ODEs resulting from 1-D, 2-D and 3-D partial -differential equations (PDE) that have been converted to ODEs by numerical -differencing.") - (license license:gpl2+))) - (define-public tcalc (package (name "tcalc")