From patchwork Tue Jan 23 10:31:36 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Sharlatan Hellseher X-Patchwork-Id: 59339 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id DF4E927BBEA; Tue, 23 Jan 2024 10:32:13 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H5,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id CF06B27BBE2 for ; Tue, 23 Jan 2024 10:32:10 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rSE4W-0007Uf-5k; Tue, 23 Jan 2024 05:32:00 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rSE4V-0007UG-CJ for guix-patches@gnu.org; Tue, 23 Jan 2024 05:31:59 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rSE4U-00064i-UF; Tue, 23 Jan 2024 05:31:58 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rSE4Z-0006ye-0k; Tue, 23 Jan 2024 05:32:03 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#68650] [PATCH v2 1/2] gnu: Add python-cppheaderparser. 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[82.25.93.113]) by smtp.gmail.com with ESMTPSA id l8-20020a5d5608000000b003392bcd6c48sm7594200wrv.79.2024.01.23.02.31.41 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 23 Jan 2024 02:31:41 -0800 (PST) From: Sharlatan Hellseher Date: Tue, 23 Jan 2024 10:31:36 +0000 Message-ID: <9894a20af993d2e79aabba9e05bc0d47d333c3c4.1706005796.git.sharlatanus@gmail.com> X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-xyz.scm (python-cppheaderparser): New variable. Change-Id: I3c57c31a0b63212e43e1ab387b5d329c04ed0e31 --- gnu/packages/python-xyz.scm | 25 ++++++++++++++++++++++++- 1 file changed, 24 insertions(+), 1 deletion(-) base-commit: ffc5fefce370f5fc01091869e13fdf525be1e0c0 diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index b23108fbf4..93e7571f78 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -94,7 +94,7 @@ ;;; Copyright © 2020, 2021 Zheng Junjie <873216071@qq.com> ;;; Copyright © 2020 EuAndreh ;;; Copyright © 2021, 2022 Morgan Smith -;;; Copyright © 2021-2023 Sharlatan Hellseher +;;; Copyright © 2021-2024 Sharlatan Hellseher ;;; Copyright © 2021 Ellis Kenyő ;;; Copyright © 2021 LibreMiami ;;; Copyright © 2021 Xinglu Chen @@ -8810,6 +8810,29 @@ (define-public python-cplot complex-valued functions.") (license license:gpl3+))) +(define-public python-cppheaderparser + (package + (name "python-cppheaderparser") + (version "2.7.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "CppHeaderParser" version)) + (sha256 + (base32 "0hncwd9y5ayk8wa6bqhp551mcamcvh84h89ba3labc4mdm0k0arq")))) + (build-system pyproject-build-system) + (arguments + (list + #:tests? #f)) ;test suite not included in the release + (propagated-inputs (list python-ply)) + (home-page "http://senexcanis.com/open-source/cppheaderparser/") + (synopsis + "Parse C++ header files and generate a data structure representing the class") + (description + "CppHeaderParser is a pure python module that will parse C++ header files +and generate a data structure representing the class.") + (license license:bsd-3))) + (define-public python-cppy (package (name "python-cppy") From patchwork Tue Jan 23 10:31:37 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Sharlatan Hellseher X-Patchwork-Id: 59338 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 268DE27BBEB; Tue, 23 Jan 2024 10:32:13 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H5,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 5D25727BBE9 for ; Tue, 23 Jan 2024 10:32:12 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rSE4d-0007Wo-4J; Tue, 23 Jan 2024 05:32:07 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rSE4Z-0007Vk-Oa for guix-patches@gnu.org; Tue, 23 Jan 2024 05:32:05 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rSE4Z-000654-F1; Tue, 23 Jan 2024 05:32:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rSE4Y-0006yV-HT; Tue, 23 Jan 2024 05:32:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#68650] [PATCH v2 2/2] gnu: python-pyamg: Regenerate bundled files. 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[82.25.93.113]) by smtp.gmail.com with ESMTPSA id l8-20020a5d5608000000b003392bcd6c48sm7594200wrv.79.2024.01.23.02.31.42 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 23 Jan 2024 02:31:42 -0800 (PST) From: Sharlatan Hellseher Date: Tue, 23 Jan 2024 10:31:37 +0000 Message-ID: <45dea5104e4c21d970f4ca6366376062e2d95a0d.1706005796.git.sharlatanus@gmail.com> X-Mailer: git-send-email 2.41.0 In-Reply-To: <9894a20af993d2e79aabba9e05bc0d47d333c3c4.1706005796.git.sharlatanus@gmail.com> References: <9894a20af993d2e79aabba9e05bc0d47d333c3c4.1706005796.git.sharlatanus@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-science.scm (python-pyamg)[source]: Delete auto-generated files. [arguments]<#:phases>: Add 'amg-core-bind-them phase to re-generate *_bind.cpp files deleted in snippet. [native-inputs]: Add python-cppheaderparser and python-pyyaml. [description]: Improve style, omit implementation details. Change-Id: I6f68914cd912e6f4592e51c21b129847e73be847 --- gnu/packages/python-science.scm | 50 +++++++++++++++++++++++++++------ 1 file changed, 41 insertions(+), 9 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index c1be6cde23..4183bd2ea2 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -465,32 +465,64 @@ (define-public python-pyamg (source (origin (method url-fetch) (uri (pypi-uri "pyamg" version)) + (modules '((guix build utils))) + (snippet + ;; Delete autogenerated files, regenerate in a phase. + #~(begin + (for-each + (lambda (file) + (delete-file (string-append "pyamg/amg_core/" file))) + '("air_bind.cpp" + "evolution_strength_bind.cpp" + "graph_bind.cpp" + "krylov_bind.cpp" + "linalg_bind.cpp" + "relaxation_bind.cpp" + "ruge_stuben_bind.cpp" + "smoothed_aggregation_bind.cpp" + "tests/bind_examples_bind.cpp")))) (sha256 (base32 "0l3dliwynxyjvbgpmi2k8jqvkkw6fc00c8w69h6swhrkfh0ql12z")))) - (build-system pyproject-build-system) (arguments (list #:test-flags ;; Test installed package in order to find C++ modules. - #~(list "--pyargs" "pyamg.tests"))) - (native-inputs (list pybind11 python-pytest python-setuptools-scm)) + #~(list "--pyargs" "pyamg.tests") + #:phases + #~(modify-phases %standard-phases + ;; Regenerate the autogenerated files. + (add-after 'unpack 'amg-core-bind-them + (lambda _ + ;; bindthem.py heavily depends on location to produce *_bind.cpp + ;; file, make it available in tests as well. + (copy-file "pyamg/amg_core/bindthem.py" + "pyamg/amg_core/tests/bindthem.py") + (with-directory-excursion "pyamg/amg_core" + (substitute* "bindthem.py" + (("/usr/bin/env python3") (which "python3"))) + (invoke "sh" "generate.sh")) + (with-directory-excursion "pyamg/amg_core/tests" + (invoke "python" "bindthem.py" "bind_examples.h"))))))) + (build-system pyproject-build-system) + (native-inputs + (list pybind11 + python-cppheaderparser + python-pytest + python-pyyaml + python-setuptools-scm)) (propagated-inputs (list python-numpy python-scipy)) (home-page "https://github.com/pyamg/pyamg") (synopsis "Algebraic Multigrid Solvers in Python") (description "PyAMG is a Python library of Algebraic Multigrid -(AMG) solvers. - -PyAMG features implementations of: +(AMG) solvers. It features implementations of: @itemize @item Ruge-Stuben (RS) or Classical AMG @item AMG based on Smoothed Aggregation (SA) @item Adaptive Smoothed Aggregation (αSA) @item Compatible Relaxation (CR) @item Krylov methods such as CG, GMRES, FGMRES, BiCGStab, MINRES, etc. -@end itemize -PyAMG is primarily written in Python with supporting C++ code for -performance critical operations.") +@end itemize") (license license:expat))) (define-public python-tspex