From patchwork Sat Dec 30 10:36:37 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Troy Figiel X-Patchwork-Id: 58248 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 1AF5227BBEA; Sun, 31 Dec 2023 12:06:26 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D2FFF27BBE9 for ; Sun, 31 Dec 2023 12:06:24 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rJua2-0006WU-EZ; Sun, 31 Dec 2023 07:06:10 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rJuZu-0006Sn-IC for guix-patches@gnu.org; Sun, 31 Dec 2023 07:06:02 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rJuZt-0007me-N9 for guix-patches@gnu.org; Sun, 31 Dec 2023 07:06:01 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rJuZu-00021b-E9 for guix-patches@gnu.org; Sun, 31 Dec 2023 07:06:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#68171] [PATCH 1/2] gnu: python-h5py: Enable tests. References: <875y0einz5.fsf@troyfigiel.com> In-Reply-To: <875y0einz5.fsf@troyfigiel.com> Resent-From: Troy Figiel Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 31 Dec 2023 12:06:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 68171 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 68171@debbugs.gnu.org Received: via spool by 68171-submit@debbugs.gnu.org id=B68171.17040243507759 (code B ref 68171); Sun, 31 Dec 2023 12:06:02 +0000 Received: (at 68171) by debbugs.gnu.org; 31 Dec 2023 12:05:50 +0000 Received: from localhost ([127.0.0.1]:45767 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rJuZh-000214-Hv for submit@debbugs.gnu.org; Sun, 31 Dec 2023 07:05:49 -0500 Received: from mout-p-201.mailbox.org ([80.241.56.171]:36668) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rJuZf-00020q-1u for 68171@debbugs.gnu.org; Sun, 31 Dec 2023 07:05:48 -0500 Received: from smtp1.mailbox.org (smtp1.mailbox.org [IPv6:2001:67c:2050:b231:465::1]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-201.mailbox.org (Postfix) with ESMTPS id 4T2yVn6sD5z9sbm for <68171@debbugs.gnu.org>; Sun, 31 Dec 2023 13:05:37 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=troyfigiel.com; s=MBO0001; t=1704024337; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type; bh=JhWDO5Ij3HWFeq2BIhqvy4gKu3Pp6NJMj2JC2PSB6+Y=; b=rgKa6La8wnBTrXT9aVjNKvaVO6KjNGl1y3DIEbzp/Ryrpl2G8K6AkJ0qHgTzoL/KLKpnGa E7isDzm0/pCbyUea5uCuZIgfW1YhFwKKzl2+ccSpt8j5n3Ar/kMfdxWIgEL535UVAPME/h CpYvJS7AaFrnx+GVuTYxrJQvrF032isETVdlV9F3fBJmXo1q5/UCoNtM08a4C8Ab8XhsD4 OsfRaEkD4/tWHApCE6bpmjuOyik+h6xnKCzgY0/Z8YX0UpzFXdkzcFhERo+m68HLUOcoa1 Yit6/q2nGi+QtKJMfiNy2LWnwP5+57W2AGUMm14bpylGxJUPGWl6TpwGsJFsJQ== From: Troy Figiel Date: Sat, 30 Dec 2023 11:36:37 +0100 Message-ID: <874jfyinlb.fsf@troyfigiel.com> MIME-Version: 1.0 X-Rspamd-Queue-Id: 4T2yVn6sD5z9sbm X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-xyz.scm (python-h5py)[native-inputs]: Add python-ipython and python-pytest. Change-Id: Ia1cae8bce802805c9d9b38a3bf515423f9b719b4 --- gnu/packages/python-xyz.scm | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 2afce6c667..b5384b7c42 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -2257,8 +2257,7 @@ (define-public python-h5py "0pyr6z4h2xqbp49yx2i1401gl6yqh03h771zslwcy0201hpxiskg")))) (build-system python-build-system) (arguments - `(#:tests? #f ; no test target - #:phases + '(#:phases (modify-phases %standard-phases (add-after 'unpack 'fix-hdf5-paths (lambda* (#:key inputs #:allow-other-keys) @@ -2268,7 +2267,7 @@ (define-public python-h5py (inputs (list hdf5-1.10)) (native-inputs - (list python-cython python-pkgconfig pkg-config)) + (list python-cython python-ipython python-pkgconfig python-pytest pkg-config)) (home-page "https://www.h5py.org/") (synopsis "Read and write HDF5 files from Python") (description From patchwork Sat Dec 30 11:06:37 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Troy Figiel X-Patchwork-Id: 58249 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 51B6927BBE9; Sun, 31 Dec 2023 12:08:15 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 64B4127BBE2 for ; Sun, 31 Dec 2023 12:08:13 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rJubs-00076S-R5; Sun, 31 Dec 2023 07:08:04 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rJubp-00076A-Ml for guix-patches@gnu.org; Sun, 31 Dec 2023 07:08:02 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rJubo-0008EM-O8 for guix-patches@gnu.org; Sun, 31 Dec 2023 07:08:01 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rJubp-00024d-R4 for guix-patches@gnu.org; Sun, 31 Dec 2023 07:08:01 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#68171] [PATCH 2/2] gnu: python-h5py: Reformat with guix style. References: <875y0einz5.fsf@troyfigiel.com> In-Reply-To: <875y0einz5.fsf@troyfigiel.com> Resent-From: Troy Figiel Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 31 Dec 2023 12:08:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 68171 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 68171@debbugs.gnu.org Received: via spool by 68171-submit@debbugs.gnu.org id=B68171.17040244267897 (code B ref 68171); Sun, 31 Dec 2023 12:08:01 +0000 Received: (at 68171) by debbugs.gnu.org; 31 Dec 2023 12:07:06 +0000 Received: from localhost ([127.0.0.1]:45772 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rJuaw-00023J-3T for submit@debbugs.gnu.org; Sun, 31 Dec 2023 07:07:06 -0500 Received: from mout-p-103.mailbox.org ([80.241.56.161]:45736) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rJuat-00022o-W3 for 68171@debbugs.gnu.org; Sun, 31 Dec 2023 07:07:04 -0500 Received: from smtp1.mailbox.org (smtp1.mailbox.org [10.196.197.1]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-103.mailbox.org (Postfix) with ESMTPS id 4T2yXH0M49z9svW for <68171@debbugs.gnu.org>; Sun, 31 Dec 2023 13:06:55 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=troyfigiel.com; s=MBO0001; t=1704024415; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type; bh=Uovhs8m+UlJMXgVtbyaIWqhgkjTQWLtSTnaKkehQ0EE=; b=LO+NRfE/GjkRG+yE/tA+uHtVCep+Tfvc0mSdbqYUjLgkP1cgffZ5fg9lgPIZSjFRkVtt/f ZfsYiC/ZXdImblcY/1KuRjJ9laGccnl2YcMv8ltUh456wfEbUuZxfh2MTwD+HH3TVeh1fU nnvS+aCVWKcrPcef+QjfPExXrP6C1xu+Q6w3NYOgv3sYvWJLA/TGKfmE243o3F3doafnfI /HUa6q1P/2CBf5Up1ytCogmhWo2c857xdMLmJJuawLcHE7WKKyuiMY0qTyjAWY8zkWIekH I6K633ogMzcGCQUJEqC+jrbDwMNQs/t0GlmBCyadYcQE+FSaeFG8O+eFyle/JA== From: Troy Figiel Date: Sat, 30 Dec 2023 12:06:37 +0100 Message-ID: <8734viinj5.fsf@troyfigiel.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-xyz.scm (python-h5py): Reformat with guix style. Change-Id: I9c8fabcb8a438909ff70a2c98c9e01b3a82079f3 --- gnu/packages/python-xyz.scm | 29 +++++++++++++---------------- 1 file changed, 13 insertions(+), 16 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index b5384b7c42..3015f0356f 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -2250,24 +2250,21 @@ (define-public python-h5py (version "3.8.0") (source (origin - (method url-fetch) - (uri (pypi-uri "h5py" version)) - (sha256 - (base32 - "0pyr6z4h2xqbp49yx2i1401gl6yqh03h771zslwcy0201hpxiskg")))) + (method url-fetch) + (uri (pypi-uri "h5py" version)) + (sha256 + (base32 "0pyr6z4h2xqbp49yx2i1401gl6yqh03h771zslwcy0201hpxiskg")))) (build-system python-build-system) (arguments - '(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'fix-hdf5-paths - (lambda* (#:key inputs #:allow-other-keys) - (setenv "HDF5_DIR" (assoc-ref inputs "hdf5"))))))) - (propagated-inputs - (list python-six python-numpy)) - (inputs - (list hdf5-1.10)) - (native-inputs - (list python-cython python-ipython python-pkgconfig python-pytest pkg-config)) + '(#:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-hdf5-paths + (lambda* (#:key inputs #:allow-other-keys) + (setenv "HDF5_DIR" + (assoc-ref inputs "hdf5"))))))) + (propagated-inputs (list python-six python-numpy)) + (inputs (list hdf5-1.10)) + (native-inputs (list pkg-config python-cython python-ipython + python-pkgconfig python-pytest)) (home-page "https://www.h5py.org/") (synopsis "Read and write HDF5 files from Python") (description