From patchwork Tue Oct 8 17:35:17 2019 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 15673 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 8A22E1754D; Tue, 8 Oct 2019 18:43:57 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00,FREEMAIL_FROM, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id 2D62E1754B for ; Tue, 8 Oct 2019 18:43:57 +0100 (BST) Received: from localhost ([::1]:59402 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iHtWd-0005GV-OL for patchwork@mira.cbaines.net; Tue, 08 Oct 2019 13:43:55 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:51480) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iHtP2-0006xK-8C for guix-patches@gnu.org; Tue, 08 Oct 2019 13:36:05 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1iHtP1-0005rU-0c for guix-patches@gnu.org; Tue, 08 Oct 2019 13:36:04 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:42628) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1iHtP0-0005rK-TO for guix-patches@gnu.org; Tue, 08 Oct 2019 13:36:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1iHtP0-0006Hl-Oq for guix-patches@gnu.org; Tue, 08 Oct 2019 13:36:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#37666] [PATCH 1/1] gnu: Add r-unifiedwmwqpcr. Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 08 Oct 2019 17:36:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 37666 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 37666@debbugs.gnu.org Cc: zimoun Received: via spool by 37666-submit@debbugs.gnu.org id=B37666.157055615524139 (code B ref 37666); Tue, 08 Oct 2019 17:36:02 +0000 Received: (at 37666) by debbugs.gnu.org; 8 Oct 2019 17:35:55 +0000 Received: from localhost ([127.0.0.1]:51448 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iHtOs-0006HG-PG for submit@debbugs.gnu.org; Tue, 08 Oct 2019 13:35:54 -0400 Received: from mail-wr1-f51.google.com ([209.85.221.51]:45515) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iHtOq-0006H1-V7 for 37666@debbugs.gnu.org; Tue, 08 Oct 2019 13:35:53 -0400 Received: by mail-wr1-f51.google.com with SMTP id r5so20319322wrm.12 for <37666@debbugs.gnu.org>; Tue, 08 Oct 2019 10:35:52 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=3vlJfO3AS1XFiBvmzARY2cSiRQ6pX/0UunSyYRpqVmk=; b=LZJY/f6Ux/NpaEsvD54GFfgxrRAVZgzBhqYa+5TBBaA0q0tFHAftd6YwgkgMB6Rsik yv1NSddGiPhvOWBa7AxW+yAvKh1/2ZbrZc4jku9edh/5xtaLyBtzCHs0w2JyRNTpKFj+ 7MuVUFFIn3tCD+sJciS4YgpBCSJqmIbWxJPEQ/VzAjztGIrvYztnmIwjds/BEvPVOAXY FQIziS8mPUFSVUPIjmb2uvdX0Jwx6sVFjtQZMIUxr+nIEZSHO8GwGQyozKUxVUOMFUQ5 mqgSb3YHiqo4gMBcij2vZCpAzXURFAMyKkyhqvLo/jjHpY8gsFraH71NV/ExBS/JUQdT inHQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=3vlJfO3AS1XFiBvmzARY2cSiRQ6pX/0UunSyYRpqVmk=; b=DLGR2/ddVitv3M/cnaoWhsngZoOS0+SKD0XgCuzBEiELJbyMqvoOVtJuLlXB+pn44z pFiS4CyYwpdzFLc2cHb3Dmph5fEjK9vy3xUgb3wUuluWAgpYRNyfrqL7cMlhgHOFbFbY uzITvj86zAqAGBQDSK5MrGAOKEnaq7NqIfswnBzhVuiayKBCRrPrnEO+pP5+VrBtRfvk Y1bPI/OMN7zh8/fwAXujpuspSyuOzZeL+dekIYwIh0dhZZt61N8Nv9T7+5YDBZNxx1R8 /BmF7Z8/pP2M0SScBZT+D7c8KEyC4bG21pC7GMx3qKau1M/JdK/RUTAedabvgIUToLLk 7Okw== X-Gm-Message-State: APjAAAV+vITl3rUllJiNzgL896BHPgwauWM+hZXuLlCrDx9c6KQZSsxb AeY9/GluwomU3MR+mPCB5cOdRfQX X-Google-Smtp-Source: APXvYqx++6g0fir+o4IFYmKV2jKj+NXlRhmkW6An7ZYkupwPqf5CosWyr/PGylJC7ZTy21MQEICsrw== X-Received: by 2002:adf:9d84:: with SMTP id p4mr27377588wre.39.1570556146926; Tue, 08 Oct 2019 10:35:46 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id s10sm5311960wmf.48.2019.10.08.10.35.46 (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Tue, 08 Oct 2019 10:35:46 -0700 (PDT) From: zimoun Date: Tue, 8 Oct 2019 19:35:17 +0200 Message-Id: <20191008173518.1074-2-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.22.0 In-Reply-To: <20191008173518.1074-1-zimon.toutoune@gmail.com> References: <20191008173518.1074-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): New variable. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 4fc4ffbce2..9cd36fc69c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6082,3 +6082,28 @@ loading, quality assessment, normalization, visualization and parametric or non-parametric testing for statistical significance in Ct values between features (e.g. genes, microRNAs).") (license license:artistic2.0))) + +(define-public r-unifiedwmwqpcr + (package + (name "r-unifiedwmwqpcr") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "unifiedWMWqPCR" version)) + (sha256 + (base32 + "10j70bp5y1x2prz2iagqmwf04y79yqinq08wz4ilh8wggb9f7l8a")))) + (properties + `((upstream-name . "unifiedWMWqPCR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-htqpcr" ,r-htqpcr))) + (home-page "https://bioconductor.org/packages/unifiedWMWqPCR") + (synopsis "Unified Wilcoxon-Mann Whitney Test for differential expression in qPCR data") + (description + "This packages implements the unified Wilcoxon-Mann-Whitney Test for qPCR +data. This modified test allows for testing differential expression in qPCR +data.") + (license license:gpl2+))) From patchwork Tue Oct 8 17:35:18 2019 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 15675 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5835E1754D; Tue, 8 Oct 2019 18:57:59 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00,FREEMAIL_FROM, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id 1B92F1754B for ; Tue, 8 Oct 2019 18:57:59 +0100 (BST) Received: from localhost ([::1]:59612 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iHtkE-0007iF-Kb for patchwork@mira.cbaines.net; Tue, 08 Oct 2019 13:57:58 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:51634) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iHtQ0-0007ii-S9 for guix-patches@gnu.org; Tue, 08 Oct 2019 13:37:06 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1iHtPz-0006QW-FN for guix-patches@gnu.org; Tue, 08 Oct 2019 13:37:04 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:42632) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1iHtPy-0006Pj-CW for guix-patches@gnu.org; Tue, 08 Oct 2019 13:37:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1iHtPy-0006JW-81 for guix-patches@gnu.org; Tue, 08 Oct 2019 13:37:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#37666] [PATCH 2/2] gnu: Add r-unifiedwmwqpcr. Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 08 Oct 2019 17:37:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 37666 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 37666@debbugs.gnu.org Cc: zimoun Received: via spool by 37666-submit@debbugs.gnu.org id=B37666.157055617424205 (code B ref 37666); Tue, 08 Oct 2019 17:37:02 +0000 Received: (at 37666) by debbugs.gnu.org; 8 Oct 2019 17:36:14 +0000 Received: from localhost ([127.0.0.1]:51453 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iHtP9-0006II-2U for submit@debbugs.gnu.org; Tue, 08 Oct 2019 13:36:11 -0400 Received: from mail-wr1-f46.google.com ([209.85.221.46]:36432) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iHtP8-0006I7-BI for 37666@debbugs.gnu.org; Tue, 08 Oct 2019 13:36:10 -0400 Received: by mail-wr1-f46.google.com with SMTP id y19so20408183wrd.3 for <37666@debbugs.gnu.org>; Tue, 08 Oct 2019 10:36:10 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=3vlJfO3AS1XFiBvmzARY2cSiRQ6pX/0UunSyYRpqVmk=; b=fCq+5hcg9QQP6ejScN6P79j+zXc8+8PivcXfWVMIRtD06lMrc71zsThwwAokM3y6/h f/fT9yztyETY4vB3S+anJJzniFW/qt+UK37+kn4JWQgQIvqAdS//sZwfONCcOT6EQgtN Pv4pjkQfSy4xbTL6EPXnKD+se6Y+cSlTgqDupVThUw49gRPzuD3d+UZCH15ywWGnBjqL MaeRQkxeYztHCbc0SO560MyAVkDnzQLWlVstifXOikjo4tEeaWXHa6O31zmFX6bZMNgT QZt6awopFUTCyZBkn3UHAMlByxhZTjpZXkjRMpA/nfu11OvpSDDvA7vU6R8zGoY3JNzf hh/g== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=3vlJfO3AS1XFiBvmzARY2cSiRQ6pX/0UunSyYRpqVmk=; b=V0ZfMeRD5vhOvH9b6xThzNCEoSiR4UAlOp2YMjmJjfUFqoG7RNQ3CaAN6PbJ5b1vAy g2Z8KTQ8nV85W4uWGqRelt7eiOOGoE4BeHhM9WVZHdOuFW4CBh7c1hEYm0JBXUgkmUUZ /qwRtesY15xcAtTt6hmG9qincHYwXcuEHFZvlKTM3YAhrHrLrBO8ND4sRGeR4UKf/Njb wl/ri0xfN07S5hjt3Dg/kbgO+bMz0CA7Web2Po053XCcuk7FRIqytCBxWDocdqUgt4Rx EZWzNCQWRa08dspRDkvYVHBnYTF7yboKMJzojbptqHnzQToGPlYbPqIPwS1sLXkEu1wk YRsQ== X-Gm-Message-State: APjAAAXTdmOHwgu2XxvParisc0ZWJURcwcrY6bQOanR945j3PQnOdo7a 4J7mcS99xZponzClwYGS0QebR8Wk X-Google-Smtp-Source: APXvYqz9MB9W83WvpOkOaWRgEdFsZO7wj50BwQXD6WHfEPkrLOZ0U/n+f4O8l1MOaG9ANaVTLCIvJg== X-Received: by 2002:a5d:5052:: with SMTP id h18mr2449463wrt.397.1570556164568; Tue, 08 Oct 2019 10:36:04 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id s10sm5311960wmf.48.2019.10.08.10.36.03 (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Tue, 08 Oct 2019 10:36:04 -0700 (PDT) From: zimoun Date: Tue, 8 Oct 2019 19:35:18 +0200 Message-Id: <20191008173518.1074-3-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.22.0 In-Reply-To: <20191008173518.1074-1-zimon.toutoune@gmail.com> References: <20191008173518.1074-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): New variable. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 4fc4ffbce2..9cd36fc69c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6082,3 +6082,28 @@ loading, quality assessment, normalization, visualization and parametric or non-parametric testing for statistical significance in Ct values between features (e.g. genes, microRNAs).") (license license:artistic2.0))) + +(define-public r-unifiedwmwqpcr + (package + (name "r-unifiedwmwqpcr") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "unifiedWMWqPCR" version)) + (sha256 + (base32 + "10j70bp5y1x2prz2iagqmwf04y79yqinq08wz4ilh8wggb9f7l8a")))) + (properties + `((upstream-name . "unifiedWMWqPCR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-htqpcr" ,r-htqpcr))) + (home-page "https://bioconductor.org/packages/unifiedWMWqPCR") + (synopsis "Unified Wilcoxon-Mann Whitney Test for differential expression in qPCR data") + (description + "This packages implements the unified Wilcoxon-Mann-Whitney Test for qPCR +data. This modified test allows for testing differential expression in qPCR +data.") + (license license:gpl2+)))