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(license license:gpl2+))) +(define-public r-msigdb + (package + (name "r-msigdb") + (version "1.8.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "msigdb" version + 'experiment)) + (sha256 + (base32 + "1kgsqg1d5r852qas09g6fs0pcmk6jgbb6g983v6iqw19qsiy6jby")))) + (properties `((upstream-name . "msigdb"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationdbi + r-annotationhub + r-experimenthub + r-gseabase + r-org-hs-eg-db + r-org-mm-eg-db)) + (native-inputs (list r-knitr)) + (home-page "https://davislaboratory.github.io/msigdb") + (synopsis "ExperimentHub package for the molecular signatures database") + (description + "R-msigdb provides the Molecular Signatures Database in a R accessible objects. +Signatures are stored in @code{GeneSet} class objects form +the GSEABase package and the entire database is stored in a +@code{GeneSetCollection} object. These data are then hosted +on the @code{ExperimentHub.} Data used in this package was +obtained from the @code{MSigDB} of the Broad Institute. +Metadata for each gene set is stored along with the gene +set in the @code{GeneSet} class object.") + (license license:cc-by4.0))) + (define-public r-pasilla (package (name "r-pasilla")