From patchwork Sat Aug 5 13:31:14 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 52547 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id BD35B27BBE9; Sat, 5 Aug 2023 14:32:31 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id DF8BA27BBE2 for ; Sat, 5 Aug 2023 14:32:29 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1qSHNz-0008QU-0i; Sat, 05 Aug 2023 09:32:03 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qSHNx-0008QC-Vh for guix-patches@gnu.org; Sat, 05 Aug 2023 09:32:01 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1qSHNx-0005kx-NI for guix-patches@gnu.org; Sat, 05 Aug 2023 09:32:01 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1qSHNx-0006Q6-Jh for guix-patches@gnu.org; Sat, 05 Aug 2023 09:32:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#65096] [PATCH 01/10] gnu: Add hmat. References: <20230805132819.1127742-1-monego@posteo.net> In-Reply-To: <20230805132819.1127742-1-monego@posteo.net> Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 05 Aug 2023 13:32:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 65096 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 65096@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 65096-submit@debbugs.gnu.org id=B65096.169124230924621 (code B ref 65096); Sat, 05 Aug 2023 13:32:01 +0000 Received: (at 65096) by debbugs.gnu.org; 5 Aug 2023 13:31:49 +0000 Received: from localhost ([127.0.0.1]:56193 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHNl-0006P2-Gk for submit@debbugs.gnu.org; Sat, 05 Aug 2023 09:31:49 -0400 Received: from mout01.posteo.de ([185.67.36.65]:47615) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHNj-0006Oo-LI for 65096@debbugs.gnu.org; Sat, 05 Aug 2023 09:31:48 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 6A066240028 for <65096@debbugs.gnu.org>; Sat, 5 Aug 2023 15:31:41 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1691242301; bh=f3pNcYmj6JxOwQZN252doXw5qgfSdeddesg9RV/w8ic=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=Rzq+qs4MsrejLtmtN1s/LwU1+dAXFt1LHkIRwEaJjQFbrWqfQAi4ZSClRuzYP1dFW rNCKntFMm8rf3M10YpleEX3qw3FIbk+3Zr1XZ0OVkwYuc6TS376NhYpSntpEf489kB eIGCy6lb4Ra4fMHyouzkddEsXh3iu87Lo3h4nEOHAoqvttBtEwa+0XNpaC8iOqlVFh 80/sK5iWExBb8vZjBFsf79TUtgqVYVrUYHvKxLw1GAN24Wa+IPgRcU4D9cytaUhPJ3 ZBbOvA0cS6WxJwomFfJCd2pl4/rEf8aVvPpyBLqO8MphtCVfAluQPT6CCYi5U/6DMK 0/DVLhTGM7hLQ== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4RJ3QN3plGz6txR; Sat, 5 Aug 2023 15:31:40 +0200 (CEST) From: Vinicius Monego Date: Sat, 5 Aug 2023 13:31:14 +0000 Message-Id: <20230805133123.1128243-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (hmat): New variable. --- gnu/packages/maths.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 0d74a2a55c..7784268453 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1293,6 +1293,30 @@ (define-public gnuplot (license (license:fsf-free "http://gnuplot.cvs.sourceforge.net/gnuplot/gnuplot/Copyright")))) +(define-public hmat + (package + (name "hmat") + (version "1.8.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jeromerobert/hmat-oss") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1vxrly6qcnry73p9297jkkixs1rrzy4wh6y35p7jy1dnx90m599p")))) + (build-system cmake-build-system) + (arguments + ;; Examples are the tests. + (list #:configure-flags #~(list "-DBUILD_EXAMPLES=ON"))) + (inputs (list openblas)) + (home-page "https://github.com/jeromerobert/hmat-oss") + (synopsis "Hierarchical matrix library") + (description "@code{hmat-oss} is hierarchical matrix library written in +C++ with a C API. It contains a LU and LLt solver, and a few other things.") + (license license:gpl2+))) + (define-public gctp (package (name "gctp") From patchwork Sat Aug 5 13:31:15 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 52546 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 75EBF27BBEA; Sat, 5 Aug 2023 14:32:31 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id F298C27BBE9 for ; Sat, 5 Aug 2023 14:32:30 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1qSHNz-0008Qg-0m; Sat, 05 Aug 2023 09:32:03 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qSHNy-0008QL-CI for guix-patches@gnu.org; Sat, 05 Aug 2023 09:32:02 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1qSHNy-0005l7-3m for guix-patches@gnu.org; Sat, 05 Aug 2023 09:32:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1qSHNy-0006QE-02 for guix-patches@gnu.org; Sat, 05 Aug 2023 09:32:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#65096] [PATCH 02/10] gnu: Add primesieve. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 05 Aug 2023 13:32:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 65096 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 65096@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 65096-submit@debbugs.gnu.org id=B65096.169124231324637 (code B ref 65096); Sat, 05 Aug 2023 13:32:01 +0000 Received: (at 65096) by debbugs.gnu.org; 5 Aug 2023 13:31:53 +0000 Received: from localhost ([127.0.0.1]:56197 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHNo-0006PI-Qu for submit@debbugs.gnu.org; Sat, 05 Aug 2023 09:31:53 -0400 Received: from mout01.posteo.de ([185.67.36.65]:49755) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHNm-0006Os-Tt for 65096@debbugs.gnu.org; Sat, 05 Aug 2023 09:31:51 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 5BEE5240029 for <65096@debbugs.gnu.org>; Sat, 5 Aug 2023 15:31:45 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1691242305; bh=UHB8rEdBbT5FSeTJPy519lP/G+ZI4ePNQ9qBM/4lmb4=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=Ap4PAlOzRZ0grf4qGUbpX5/OzakZd5U8MPxwWvESoDIDJRhShF/+jV2cRZNUiuoLB 4DEmg9Tm3ivNox77aPNweOjN+OrIOksn+8eBPwNCWooIHcRP7R7NK7hs1K+1ZDic4P ejxc3GzpP0eg4oGYYVGdv4A8CyfiUekLwMBgbA03FXmAQowjTZW45XObb3Z4w6w+af IGMvXxC6YK08Jf0rc75XeV11gFkYApeyrmoWHluBQUpaPGN/XzQty99FXUTBD5SRoJ OSBUTxo8oAxftFQ5HsXOqwa/sOQUFcev/SWHfs8A8aB7fOITYhKBk3sfjFEznzQl/c uFoc1vETgoTjA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4RJ3QS3nStz6txf; Sat, 5 Aug 2023 15:31:44 +0200 (CEST) From: Vinicius Monego Date: Sat, 5 Aug 2023 13:31:15 +0000 Message-Id: <20230805133123.1128243-2-monego@posteo.net> In-Reply-To: <20230805133123.1128243-1-monego@posteo.net> References: <20230805133123.1128243-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (primesieve): New variable. --- gnu/packages/maths.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 7784268453..ed5c766c25 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1317,6 +1317,33 @@ (define-public hmat C++ with a C API. It contains a LU and LLt solver, and a few other things.") (license license:gpl2+))) +(define-public primesieve + (package + (name "primesieve") + (version "11.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/kimwalisch/primesieve") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0ja3kxvpya7bwrib40hnyahsiiiavf65ppk7i7afvc093b7gg9bg")))) + (build-system cmake-build-system) + (arguments + (list #:configure-flags #~(list "-DBUILD_STATIC_LIBS=off" + "-DBUILD_TESTS=ON"))) + (home-page "https://github.com/kimwalisch/primesieve") + (synopsis "Prime number generator") + (description "@code{primesieve} is a command-line program and C/C++ + library for quickly generating prime numbers. It is very cache efficient, + it detects your CPU's L1 & L2 cache sizes and allocates its main data + structures accordingly. It is also multi-threaded by default, it uses all + available CPU cores whenever possible i.e. if sequential ordering is not + required. primesieve can generate primes and prime k-tuplets up to 264.") + (license license:bsd-2))) + (define-public gctp (package (name "gctp") From patchwork Sat Aug 5 13:31:16 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 52544 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id E543727BBEA; Sat, 5 Aug 2023 14:32:14 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 2305A27BBE2 for ; Sat, 5 Aug 2023 14:32:14 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1qSHO0-0008RL-Vx; Sat, 05 Aug 2023 09:32:05 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qSHNy-0008QT-P6 for guix-patches@gnu.org; Sat, 05 Aug 2023 09:32:02 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1qSHNy-0005mZ-Fq for guix-patches@gnu.org; Sat, 05 Aug 2023 09:32:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1qSHNy-0006QM-C3 for guix-patches@gnu.org; Sat, 05 Aug 2023 09:32:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#65096] [PATCH 03/10] gnu: Add cminpack. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 05 Aug 2023 13:32:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 65096 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 65096@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 65096-submit@debbugs.gnu.org id=B65096.169124231624654 (code B ref 65096); Sat, 05 Aug 2023 13:32:02 +0000 Received: (at 65096) by debbugs.gnu.org; 5 Aug 2023 13:31:56 +0000 Received: from localhost ([127.0.0.1]:56201 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHNs-0006PZ-8F for submit@debbugs.gnu.org; Sat, 05 Aug 2023 09:31:56 -0400 Received: from mout01.posteo.de ([185.67.36.65]:57043) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHNr-0006P9-1h for 65096@debbugs.gnu.org; Sat, 05 Aug 2023 09:31:55 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 7C248240028 for <65096@debbugs.gnu.org>; Sat, 5 Aug 2023 15:31:49 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1691242309; bh=WH118WEwmGAa3qhkJujRmCw+r3Lr8vYV91f/QHFk6ck=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=iTDbqnDfW1RKKZNoBLf0brKBwsux3j535Sls/0wco0du6y5+hDMRmu4OGarh5Wx/l Dq0X+saXZsoZcLGDiizSGc+hninZtNIpHYFe7hPMs+suTSN7nYZFQg/Nk30v0VYgCT /ccKeIuR0w+DlUfvdOy1RUBz58VO0kDo4CExB/cD7HPd5/QThZ2mnrbzhAwIcfJtRA AuhA1UnBAezfNlgLgOL/xPoAt9AE+//EJxOaJZ1ngZmTwNY19ZH5uy0gZ2+he9Rs+j JIt+/nBTn2yWFCZ6sGw7OJulAqV2jgX1NTuSi8SA7q47WJSHpSDKv1npGBAJdcRXZ9 t+ctXkwmGoWVA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4RJ3QX46RTz6tvt; Sat, 5 Aug 2023 15:31:48 +0200 (CEST) From: Vinicius Monego Date: Sat, 5 Aug 2023 13:31:16 +0000 Message-Id: <20230805133123.1128243-3-monego@posteo.net> In-Reply-To: <20230805133123.1128243-1-monego@posteo.net> References: <20230805133123.1128243-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (cminpack): New variable. --- gnu/packages/maths.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index ed5c766c25..062498375d 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1344,6 +1344,31 @@ (define-public primesieve required. primesieve can generate primes and prime k-tuplets up to 264.") (license license:bsd-2))) +(define-public cminpack + (package + (name "cminpack") + (version "1.3.8") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/devernay/cminpack") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1bg0954mwry22izsvikpai16pkfp8srz4z34n267bhkmrvvb0zgy")))) + (build-system cmake-build-system) + (arguments + (list #:configure-flags #~(list "-DBUILD_SHARED_LIBS=ON"))) + (home-page "https://github.com/devernay/cminpack") + (synopsis "C/C++ rewrite of the MINPACK software") + (description + "This is a C version of the minpack minimization package. It has been +derived from the fortran code using f2c and some limited manual editing. +Extern C linkage permits the package routines to be called from C++.") + (license (license:non-copyleft ; original minpack license + "https://github.com/certik/minpack/blob/master/LICENSE")))) + (define-public gctp (package (name "gctp") From patchwork Sat Aug 5 13:31:17 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 52545 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 7EB9C27BBEA; Sat, 5 Aug 2023 14:32:27 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D4D7C27BBE2 for ; Sat, 5 Aug 2023 14:32:26 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1qSHO1-0008Rg-7g; Sat, 05 Aug 2023 09:32:05 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qSHNz-0008R0-5v for guix-patches@gnu.org; Sat, 05 Aug 2023 09:32:03 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1qSHNy-0005o7-Sq for guix-patches@gnu.org; Sat, 05 Aug 2023 09:32:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1qSHNy-0006QT-OZ for guix-patches@gnu.org; Sat, 05 Aug 2023 09:32:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#65096] [PATCH 04/10] gnu: Add bonmin. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 05 Aug 2023 13:32:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 65096 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 65096@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 65096-submit@debbugs.gnu.org id=B65096.169124232124675 (code B ref 65096); Sat, 05 Aug 2023 13:32:02 +0000 Received: (at 65096) by debbugs.gnu.org; 5 Aug 2023 13:32:01 +0000 Received: from localhost ([127.0.0.1]:56205 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHNw-0006Pq-KT for submit@debbugs.gnu.org; Sat, 05 Aug 2023 09:32:01 -0400 Received: from mout01.posteo.de ([185.67.36.65]:42293) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHNu-0006PQ-TP for 65096@debbugs.gnu.org; Sat, 05 Aug 2023 09:31:59 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 58804240029 for <65096@debbugs.gnu.org>; Sat, 5 Aug 2023 15:31:53 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1691242313; bh=AEmaut5Um0FWjTjoBAbG3UGYl1JYIgb0vKAUzFBjG2g=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=aADQAjPAKTBvvcRDbjTB9HYTzsZSssfKEaWXHxyWqnNWuCovsgKiE2Di8tJM87BEw P73lhVJVcJPmHGtAPPIHokPMosgfV4woudQWpX0uQyu304lb7hprU/FtVo/CN++6yt mV6v8VvwelKNnRT8HleB6Bg/IV2rBEx+h6VQjutqFoJhE2y4giCJmKapHgLrTJYN9E g8yO2yNJYHEvL5CzjfvAajCE80M0OO2KV7a5aUceg4n2/xx14mFMXuTvchDRICzpoT GWDHgrmKGEraZI48Q8/4voRUewpOAsgoum9tOlnbR7g076+DWQDxg8fO7Ae7prjWiS zGkN/RzW3hGdQ== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4RJ3Qc3LC2z6tvt; Sat, 5 Aug 2023 15:31:52 +0200 (CEST) From: Vinicius Monego Date: Sat, 5 Aug 2023 13:31:17 +0000 Message-Id: <20230805133123.1128243-4-monego@posteo.net> In-Reply-To: <20230805133123.1128243-1-monego@posteo.net> References: <20230805133123.1128243-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (bonmin): New variable. --- gnu/packages/maths.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 062498375d..c02ba2570e 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1369,6 +1369,28 @@ (define-public cminpack (license (license:non-copyleft ; original minpack license "https://github.com/certik/minpack/blob/master/LICENSE")))) +(define-public bonmin + (package + (name "bonmin") + (version "1.8.9") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/coin-or/Bonmin") + (commit (string-append "releases/" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "153kj4wx386609g21hw3cv5yxps62qqrc64zwb9ryd2xad1w1a4y")))) + (build-system gnu-build-system) + (native-inputs (list gfortran pkg-config)) + (inputs (list cbc ipopt lapack)) + (home-page "https://coin-or.github.io/Bonmin/") + (synopsis "Basic Open-source Nonlinear Mixed INteger programming") + (description "Bonmin is a code for solving general MINLP (Mixed Integer +NonLinear Programming) problems. It builds on top of Cbc and Ipopt.") + (license license:epl1.0))) + (define-public gctp (package (name "gctp") From patchwork Sat Aug 5 13:31:18 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 52553 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id CC81227BBE9; Sat, 5 Aug 2023 14:33:50 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 4891B27BBEA for ; Sat, 5 Aug 2023 14:33:49 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1qSHOx-0000ac-Ik; Sat, 05 Aug 2023 09:33:03 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qSHOw-0000Zy-22 for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:02 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1qSHOv-00067p-Q7 for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:01 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1qSHOv-0006Sw-LY for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#65096] [PATCH 05/10] gnu: Add pagmo2. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 05 Aug 2023 13:33:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 65096 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 65096@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 65096-submit@debbugs.gnu.org id=B65096.169124232524724 (code B ref 65096); Sat, 05 Aug 2023 13:33:01 +0000 Received: (at 65096) by debbugs.gnu.org; 5 Aug 2023 13:32:05 +0000 Received: from localhost ([127.0.0.1]:56213 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHO1-0006Qh-2Y for submit@debbugs.gnu.org; Sat, 05 Aug 2023 09:32:05 -0400 Received: from mout01.posteo.de ([185.67.36.65]:37211) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHNy-0006Ph-RP for 65096@debbugs.gnu.org; Sat, 05 Aug 2023 09:32:03 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 4860C240028 for <65096@debbugs.gnu.org>; Sat, 5 Aug 2023 15:31:57 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1691242317; bh=BaMch2dOoxRXPgDcv4WYT9evdE5HXdAGHp/q2yGphcs=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=f9iJTsULSCcT+bHX/MBQ67xYibQYjenPyT6ksxTPykK0Cd+P20Fm7nONGkLNuWY9f HOSlKWaHHezph74n1MEQlWXsBKFDW21imaSRLhMb2ZSJ8lQaQ5yKq/Q7XoFAwRjVg1 ulPLcaCTaSOM36W62bQWr81TTO+TW+YTD7Re9tmqfx8nqkYcJfjH4x5xypmPftoPtx 0St6qo9L9ypU3AloLQ+vhr3zPjW9ySwMzcl/gzkq+6vUuH2R2/P6VcpuPrvKWQ7TUH WmWYl3f3NPBD2RazIDVq3tQDoGa8nKcDtJzJX7vHNbHFV7D+aLDf+VqY+cWMkIKMEJ rgUx7Kd5UW5Ng== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4RJ3Qh2xT5z6tvt; Sat, 5 Aug 2023 15:31:56 +0200 (CEST) From: Vinicius Monego Date: Sat, 5 Aug 2023 13:31:18 +0000 Message-Id: <20230805133123.1128243-5-monego@posteo.net> In-Reply-To: <20230805133123.1128243-1-monego@posteo.net> References: <20230805133123.1128243-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (pagmo2): New variable. --- gnu/packages/maths.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index c02ba2570e..7accf87baf 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1391,6 +1391,35 @@ (define-public bonmin NonLinear Programming) problems. It builds on top of Cbc and Ipopt.") (license license:epl1.0))) +(define-public pagmo2 + (package + (name "pagmo2") + (version "2.19.0") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/esa/pagmo2") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0g0j0k0cwp8kyyggj80s5cd24bl6gqmf6f5g7j2axswr2bdj16fg")))) + (build-system cmake-build-system) + (arguments + (list #:configure-flags #~(list "-DPAGMO_BUILD_TESTS=ON" + "-DPAGMO_WITH_EIGEN3=ON"))) + ;; Eigen is optional, enables some extra features. + (inputs (list boost eigen tbb)) + (home-page "https://github.com/esa/pagmo2") + (synopsis + "Platform to perform parallel computations of optimisation tasks") + (description "@code{pagmo} is a C++ scientific library for massively +parallel optimization. It is built around the idea of providing a unified +interface to optimization algorithms and to optimization problems and to make +their deployment in massively parallel environments easy.") + ;; Dual licensed, user choice. + (license (list license:lgpl3+ license:gpl3+)))) + (define-public gctp (package (name "gctp") From patchwork Sat Aug 5 13:31:19 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 52552 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 702A127BBEC; Sat, 5 Aug 2023 14:33:49 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id A8DDE27BBE2 for ; Sat, 5 Aug 2023 14:33:48 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1qSHOx-0000aj-Qg; Sat, 05 Aug 2023 09:33:03 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qSHOw-0000a6-GX for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:02 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1qSHOw-00067v-8V for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1qSHOw-0006T3-3G for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#65096] [PATCH 06/10] gnu: Add spectra. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 05 Aug 2023 13:33:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 65096 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 65096@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 65096-submit@debbugs.gnu.org id=B65096.169124233024742 (code B ref 65096); Sat, 05 Aug 2023 13:33:02 +0000 Received: (at 65096) by debbugs.gnu.org; 5 Aug 2023 13:32:10 +0000 Received: from localhost ([127.0.0.1]:56217 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHO6-0006R0-Eu for submit@debbugs.gnu.org; Sat, 05 Aug 2023 09:32:10 -0400 Received: from mout02.posteo.de ([185.67.36.66]:53681) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHO3-0006Q8-B6 for 65096@debbugs.gnu.org; Sat, 05 Aug 2023 09:32:09 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id 49574240106 for <65096@debbugs.gnu.org>; Sat, 5 Aug 2023 15:32:01 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1691242321; bh=gWnmrcYZuptomIMFdwj6bGOBS/HpmRz3AwhlMTATHkg=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=g/OATyoL5R6hhElsPEBFS6Mlm+xPWAIfIhCWbc2p3U5H75ohr73yaCCSzR2/Qmelb tcFXhbYFQoAEpOWDJni8Gquy8xldEU97IM2la1MbG5/0rum6daieuhm4aVtjdJZeah fZE/HSzDK984z3eTTcNBjDZLhjFlORzK6X1h3t3r+6mzx4zmt5bCSCwzIR094USCY0 5+7ovMsjgkEFgSZWgzLvcwA6tDU4knOY+D8sSenH+d65j3J/v6YzA8mJZhLQRRSmK2 ovNogmRVx2AZznDhCroZAWm5hE5RLkBg2q5nujpBG2GmqZKIkYBh+F/ZeAXmxL7AWa 5aG02hqBJTvMg== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4RJ3Qm2tltz6tmv; Sat, 5 Aug 2023 15:32:00 +0200 (CEST) From: Vinicius Monego Date: Sat, 5 Aug 2023 13:31:19 +0000 Message-Id: <20230805133123.1128243-6-monego@posteo.net> In-Reply-To: <20230805133123.1128243-1-monego@posteo.net> References: <20230805133123.1128243-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/algebra.scm (spectra): New variable. --- gnu/packages/algebra.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm index a717750c7b..20a3d403b1 100644 --- a/gnu/packages/algebra.scm +++ b/gnu/packages/algebra.scm @@ -1398,6 +1398,40 @@ (define-public gap ;; safe side, we drop them for now. (license license:gpl2+))) +(define-public spectra + (package + (name "spectra") + (version "1.0.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/yixuan/spectra") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1krgx7763g0phrp879rgq10dvfyxrdx9rzwxiyzn6qi3iqr6d8hx")))) + (build-system cmake-build-system) + (arguments + (list #:configure-flags #~(list "-DBUILD_TESTS=ON") + #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; This test failed. + (invoke "ctest" "--exclude-regex" + "GenEigsRealShift"))))))) + (inputs (list eigen)) + (home-page "https://spectralib.org/") + (synopsis "C++ library for large scale eigenvalue problems") + (description "Spectra stands for Sparse Eigenvalue Computation Toolkit as +a Redesigned ARPACK. It is a C++ library for large scale eigenvalue problems, +built on top of Eigen. It is implemented as a header-only C++ library and can +be easily embedded in C++ projects that require calculating eigenvalues of +large matrices.") + (license license:mpl2.0))) + (define-public gappa (package (name "gappa") From patchwork Sat Aug 5 13:31:20 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 52550 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id D51FD27BBEA; Sat, 5 Aug 2023 14:33:29 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 5228A27BBE2 for ; Sat, 5 Aug 2023 14:33:29 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1qSHOy-0000bF-Gp; Sat, 05 Aug 2023 09:33:04 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qSHOw-0000aE-SK for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:02 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1qSHOw-000683-KG for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1qSHOw-0006TC-Ge for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#65096] [PATCH 07/10] gnu: ceres: Propagate eigen and gflags. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 05 Aug 2023 13:33:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 65096 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 65096@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 65096-submit@debbugs.gnu.org id=B65096.169124233324757 (code B ref 65096); Sat, 05 Aug 2023 13:33:02 +0000 Received: (at 65096) by debbugs.gnu.org; 5 Aug 2023 13:32:13 +0000 Received: from localhost ([127.0.0.1]:56221 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHO8-0006RF-PA for submit@debbugs.gnu.org; Sat, 05 Aug 2023 09:32:13 -0400 Received: from mout02.posteo.de ([185.67.36.66]:47759) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHO6-0006Qj-L9 for 65096@debbugs.gnu.org; Sat, 05 Aug 2023 09:32:11 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id 1C709240101 for <65096@debbugs.gnu.org>; Sat, 5 Aug 2023 15:32:05 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1691242325; bh=piD4KnLAOIplXoTMoTne3j/oikQu0NUi9kU5jFpn6HE=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=ESiMVfBnVQvNtME+dujY3g50PFgxHOcLbAFVGnqQh0RaMsXDGnaZbVWH1sno+yDP5 WEKH6ijCyMt9OJoWLzvC5k9U2mY0rfZQgY8kZP+gf5FBSGuoTuyRCM5d+5VfqHDY6J s/3JbJOPG34MV/KFM3/GTvfX7zNXWwhgKMmFoMXwAGH5Q7H4aGXjW8GZ5AUUQ+wnZ3 8DPp9k5EqIK60OLBDEajQR0nj71VB+dDTL/4V0EykX0GL7JZ+9xOrZciU8OvVmLf/U 4e7YItGT/xOGddtfks9RX05/JqXNP8QBoUpDPPUsnsuW2q+CZcaxDN3mnS9OmH7zBi xgT6o48B/Z3Qw== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4RJ3Qr1VZZz6txf; Sat, 5 Aug 2023 15:32:03 +0200 (CEST) From: Vinicius Monego Date: Sat, 5 Aug 2023 13:31:20 +0000 Message-Id: <20230805133123.1128243-7-monego@posteo.net> In-Reply-To: <20230805133123.1128243-1-monego@posteo.net> References: <20230805133123.1128243-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (ceres)[inputs]: Move eigen and gflags to ... [propagated-inputs]: ... here. --- gnu/packages/maths.scm | 14 ++++---------- 1 file changed, 4 insertions(+), 10 deletions(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 7accf87baf..9e283ca889 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -2864,16 +2864,10 @@ (define-public ceres (substitute* "CMakeLists.txt" (("set\\(LIB_SUFFIX \"64\"\\)") "set(LIB_SUFFIX \"\")"))))))) - (native-inputs - (list pkg-config)) - (propagated-inputs - (list glog)) ;for #include - (inputs - (list eigen - openblas - lapack - suitesparse - gflags)) + (native-inputs (list pkg-config)) + ;; These inputs need to be propagated to satisfy dependent packages. + (propagated-inputs (list eigen gflags glog)) + (inputs (list openblas lapack suitesparse)) (synopsis "C++ library for solving large optimization problems") (description "Ceres Solver is a C++ library for modeling and solving large, From patchwork Sat Aug 5 13:31:21 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 52551 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id B7F9427BBEA; Sat, 5 Aug 2023 14:33:32 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 0A3E027BBE2 for ; Sat, 5 Aug 2023 14:33:32 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1qSHOy-0000bX-Jq; Sat, 05 Aug 2023 09:33:04 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qSHOx-0000aP-7c for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:03 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1qSHOw-00068B-VY for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1qSHOw-0006TJ-SN for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#65096] [PATCH 08/10] gnu: Add python-numpoly. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 05 Aug 2023 13:33:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 65096 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 65096@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 65096-submit@debbugs.gnu.org id=B65096.169124233624774 (code B ref 65096); Sat, 05 Aug 2023 13:33:02 +0000 Received: (at 65096) by debbugs.gnu.org; 5 Aug 2023 13:32:16 +0000 Received: from localhost ([127.0.0.1]:56225 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHOC-0006RV-2D for submit@debbugs.gnu.org; Sat, 05 Aug 2023 09:32:16 -0400 Received: from mout01.posteo.de ([185.67.36.65]:42659) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHOA-0006Qt-CA for 65096@debbugs.gnu.org; Sat, 05 Aug 2023 09:32:15 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id BD20724002B for <65096@debbugs.gnu.org>; Sat, 5 Aug 2023 15:32:08 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1691242328; bh=LmaeE3K3c0sDf1qWsHlfP2F+8IsR37hWXwYTHahIB0w=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=Ir/3eePLEtDfh/dEZ8IvptoIY133ZKMJVGWEUJ0o1ASzXBcTu9uFL787NqMz73W1T a6tIvc2eT0mzM9hm7cTUPOZ9wNfdHGNLBJyfxn4AmtpDRCxubPja2RvsqOB93xLUsc v19daZdjdXw3mnEJb6JSsEHh8mTmZp+mqfhPP8xxNx5lBEOymQNu1XBWHED9rmsZuH ZWE2PH7b04iHo7xqr7kDJB+aiT7Vm+tb0+ObCkZ0YKUbTl8aPTe4kPYUjNBxtWwBKH D555L05EFKaxUJJ5AO/ErfFQcjzAoi1PKyanugrfF9Q7dj17g1XYK4DJ7TMOSlJb9d WyJxhF9B6F+IA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4RJ3Qv6xPTz6twj; Sat, 5 Aug 2023 15:32:07 +0200 (CEST) From: Vinicius Monego Date: Sat, 5 Aug 2023 13:31:21 +0000 Message-Id: <20230805133123.1128243-8-monego@posteo.net> In-Reply-To: <20230805133123.1128243-1-monego@posteo.net> References: <20230805133123.1128243-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-science.scm (python-numpoly): New variable. --- gnu/packages/python-science.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 86ba4209fd..9ed3359542 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -630,6 +630,28 @@ (define-public python-bottleneck written in C.") (license license:bsd-2))) +(define-public python-numpoly + (package + (name "python-numpoly") + (version "1.2.11") + (source (origin + (method git-fetch) ;; PyPI is missing some Pytest fixtures + (uri (git-reference + (url "https://github.com/jonathf/numpoly") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "01g21v91f4d66xd0bvap0n6d6485w2fnq1636gx6h2s42550rlbd")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-importlib-metadata python-numpy)) + (native-inputs (list python-pytest python-sympy)) + (home-page "https://numpoly.readthedocs.io/en/master/") + (synopsis "Polynomials as a numpy datatype") + (description "Numpoly is a generic library for creating, manipulating and +evaluating arrays of polynomials based on @code{numpy.ndarray objects}.") + (license license:bsd-2))) + (define-public python-baycomp (package (name "python-baycomp") From patchwork Sat Aug 5 13:31:22 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 52548 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id C475227BBEA; Sat, 5 Aug 2023 14:33:12 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id BFD4727BBE2 for ; Sat, 5 Aug 2023 14:33:11 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1qSHOz-0000c0-Sd; Sat, 05 Aug 2023 09:33:05 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qSHOx-0000ae-KQ for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:03 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1qSHOx-00068H-CF for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1qSHOx-0006TQ-8K for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#65096] [PATCH 09/10] gnu: Add python-chaospy. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 05 Aug 2023 13:33:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 65096 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 65096@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 65096-submit@debbugs.gnu.org id=B65096.169124234024789 (code B ref 65096); Sat, 05 Aug 2023 13:33:03 +0000 Received: (at 65096) by debbugs.gnu.org; 5 Aug 2023 13:32:20 +0000 Received: from localhost ([127.0.0.1]:56229 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHOF-0006Rl-J7 for submit@debbugs.gnu.org; Sat, 05 Aug 2023 09:32:19 -0400 Received: from mout02.posteo.de ([185.67.36.66]:41025) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHOD-0006RE-N8 for 65096@debbugs.gnu.org; Sat, 05 Aug 2023 09:32:18 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id 2D4BE240101 for <65096@debbugs.gnu.org>; Sat, 5 Aug 2023 15:32:12 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1691242332; bh=2X5J32XYu+XGTC2OtArPwq/XAV8+rCGi2Q801wWfU3M=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=qmBCKIjW13iAKj86i6RlMv1z1NkFoCrFBJPK6dL/kckXyNWHIKbpF/0Unbgl1LnRA JNapg6my2hvoNNA15fqIMydclS5SUAtWJtHKHa7ch4kadbJ6BZhA/mTnpKJiiE1xAf f3Z1gEYHpHMm69QIn42j9+lWmsC/PhcXUzlmeF5XgGdWjN5uJ0h+tP3sTztqekaoWb Sru4TFwup8nbZAYyQ5Cj0Zv7NC0SzXuGfWwhfgOBmIQJSf2mcVs2PsWIy42q5imxUq rYUI/VoacC/wEM68V8KtxFAJ27WAHBTKKa6/XMLeTMI10WP1jHkMCjWnfAFhX35klk QD/lM5P1Maelg== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4RJ3Qz2lmYz6ty3; Sat, 5 Aug 2023 15:32:11 +0200 (CEST) From: Vinicius Monego Date: Sat, 5 Aug 2023 13:31:22 +0000 Message-Id: <20230805133123.1128243-9-monego@posteo.net> In-Reply-To: <20230805133123.1128243-1-monego@posteo.net> References: <20230805133123.1128243-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/statistics.scm (python-chaospy): New variable. --- gnu/packages/statistics.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index dc620b13a1..2aecd5b8e3 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2231,6 +2231,32 @@ (define-public python-pymc inference (VI) algorithms.") (license license:asl2.0))) +(define-public python-chaospy + (package + (name "python-chaospy") + (version "4.3.13") + (source (origin ;; PyPI misses Pytest fixtures. + (method git-fetch) + (uri (git-reference + (url "https://github.com/jonathf/chaospy") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1bn4jmwygs5h0dskbniivj20qblgm75pyi9hcjf47r25kawd730m")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-importlib-metadata python-numpoly + python-numpy python-scipy)) + (native-inputs (list python-pytest python-scikit-learn)) + (home-page "https://chaospy.readthedocs.io/en/master/") + (synopsis "Numerical tool for performing uncertainty quantification") + (description "Chaospy is a numerical toolbox for performing uncertainty +quantification using polynomial chaos expansions, advanced Monte Carlo +methods implemented in Python. It also include a full suite of tools for +doing low-discrepancy sampling, quadrature creation, polynomial manipulations, +and a lot more.") + (license license:expat))) + (define-public python-patsy (package (name "python-patsy") From patchwork Sat Aug 5 13:31:23 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 52549 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 21FF127BBEA; Sat, 5 Aug 2023 14:33:20 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id CCDCE27BBE2 for ; Sat, 5 Aug 2023 14:33:18 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1qSHOz-0000c1-Tu; Sat, 05 Aug 2023 09:33:05 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qSHOy-0000ao-0L for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:04 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1qSHOx-00068N-OO for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1qSHOx-0006TY-Ki for guix-patches@gnu.org; Sat, 05 Aug 2023 09:33:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#65096] [PATCH 10/10] gnu: Add python-openturns. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 05 Aug 2023 13:33:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 65096 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 65096@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 65096-submit@debbugs.gnu.org id=B65096.169124234624809 (code B ref 65096); Sat, 05 Aug 2023 13:33:03 +0000 Received: (at 65096) by debbugs.gnu.org; 5 Aug 2023 13:32:26 +0000 Received: from localhost ([127.0.0.1]:56233 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHOL-0006S5-VG for submit@debbugs.gnu.org; Sat, 05 Aug 2023 09:32:26 -0400 Received: from mout01.posteo.de ([185.67.36.65]:38509) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qSHOH-0006RW-Mm for 65096@debbugs.gnu.org; Sat, 05 Aug 2023 09:32:25 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 287EB240027 for <65096@debbugs.gnu.org>; Sat, 5 Aug 2023 15:32:16 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1691242336; bh=AEnkoL8sNLn9lF44FA5hkBLQ7tQPokBGYqWYTwsc8Kg=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=XigopQFH+mqzttWrsS3Ui1F2YCjqfTCMZ1HwmPuw1inrtVaTVYfwBhzQ82xWVUBPg bKvINjn+ljp71WTTcsKspyh9g0gqAZ4AI08nemE8ksghdu0off7xElAHrVVYPuzjMJ quCcMBb9qNLyO04a2MnOhm5IBDEUUq24WgVQx/CQiHhseAThywufEu3OLQX8O2v9zz BVPIEXprTbNcIx+GfgLkrOsX7rtD2PiY4zfS2aagBkWA1WIuU3vhRVRGKgg4lXpUBZ CwU+yGlADAz/NtYrK8EdTX05BcsHgi/H2MZD7BEaAQI6+L7DIgTaSpNqHA2MMW2T8m x5mhkAo8lJL5Q== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4RJ3R31YXZz6tvt; Sat, 5 Aug 2023 15:32:14 +0200 (CEST) From: Vinicius Monego Date: Sat, 5 Aug 2023 13:31:23 +0000 Message-Id: <20230805133123.1128243-10-monego@posteo.net> In-Reply-To: <20230805133123.1128243-1-monego@posteo.net> References: <20230805133123.1128243-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/statistics.scm (python-openturns): New variable. --- gnu/packages/statistics.scm | 93 +++++++++++++++++++++++++++++++++++++ 1 file changed, 93 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 2aecd5b8e3..8680d0e7be 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -43,6 +43,7 @@ (define-module (gnu packages statistics) #:use-module (guix git-download) #:use-module (guix utils) #:use-module (guix build-system ant) + #:use-module (guix build-system cmake) #:use-module (guix build-system emacs) #:use-module (guix build-system gnu) #:use-module (guix build-system r) @@ -54,12 +55,15 @@ (define-module (gnu packages statistics) #:use-module (gnu packages algebra) #:use-module (gnu packages autotools) #:use-module (gnu packages bash) + #:use-module (gnu packages bison) + #:use-module (gnu packages boost) #:use-module (gnu packages check) #:use-module (gnu packages compression) #:use-module (gnu packages cran) #:use-module (gnu packages curl) #:use-module (gnu packages emacs) #:use-module (gnu packages emacs-xyz) + #:use-module (gnu packages flex) #:use-module (gnu packages fontutils) #:use-module (gnu packages gcc) #:use-module (gnu packages gtk) @@ -90,6 +94,7 @@ (define-module (gnu packages statistics) #:use-module (gnu packages sphinx) #:use-module (gnu packages ssh) #:use-module (gnu packages swig) + #:use-module (gnu packages tbb) #:use-module (gnu packages tcl) #:use-module (gnu packages tex) #:use-module (gnu packages texinfo) @@ -2342,6 +2347,94 @@ (define-public python-statsmodels inference for statistical models.") (license license:bsd-3))) +(define-public python-openturns + (package + (name "python-openturns") + (version "1.21") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/openturns/openturns") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "05lbx8npvvk7jyakvfpgi9ggdp6cnzwv2hjmjrkji2s42axv0q6d")))) + (build-system cmake-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (delete 'check) + ;; This is a Python package which is fully managed by CMake. In + ;; cmake-build-system the check phase runs before install, but the + ;; Python modules required for testing are only installed in the + ;; install phase. Move check to after the install phase. + (add-after 'install 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "ctest" "--exclude-regex" + ;; XXX: Cpp tests fail in 'No such file or directory', + ;; skip for now and only run the Python tests. + ;; TODO: To pass the Python tests below, Ipopt must be + ;; built with MUMPS support, but simply adding mumps + ;; to the inputs doesn't work for it to be found, + ;; possibly because MUMPS doesn't generate a .pc file. + (string-join + (list "^cpp" + "pyinstallcheck_Bonmin_std" + "pyinstallcheck_Bonmin_4dsoo" + "pyinstallcheck_Bonmin_MIT15" + "pyinstallcheck_Bonmin_swiler2014" + "pyinstallcheck_Ipopt_std" + "pyinstallcheck_example_plot_optimization_bonmin" + "pyinstallcheck_coupling_tools") + "|")))))))) + (native-inputs + (list bison + dvisvgm + flex + python-numpydoc + python-sphinx + ;; python-sphinx-gallery ;; Currently broken + swig)) + (inputs + (list openblas ; the only required dependency + ;; The dependecies below are all optional. + bonmin + boost + cbc ;; Maybe this should be propagated by Bonmin? + ceres + cminpack + dlib + hdf5 + hmat + ipopt + libxml2 + mpc + mpfr + nlopt + pagmo2 + primesieve + python-wrapper + spectra + tbb)) + (propagated-inputs + (list python-chaospy + python-dill + python-matplotlib + python-numpy + python-pandas + python-scipy)) + (home-page "https://openturns.github.io/www/") + (synopsis "Uncertainty treatment library") + (description + "OpenTURNS is a scientific C++ and Python library including an internal +data model and algorithms dedicated to the treatment of uncertainties. The +main goal of this library is giving to specific applications all the +functionalities needed to treat uncertainties in studies.") + (license license:lgpl3+))) + (define-public r-coda (package (name "r-coda")