From patchwork Wed Nov 28 19:48:19 2018 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Paul Garlick X-Patchwork-Id: 342 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 1CA4816862; Wed, 28 Nov 2018 19:50:04 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-6.9 required=5.0 tests=BAYES_00,RCVD_IN_DNSWL_HI autolearn=unavailable autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [IPv6:2001:4830:134:3::11]) by mira.cbaines.net (Postfix) with ESMTPS id A873C16860 for ; Wed, 28 Nov 2018 19:50:03 +0000 (GMT) Received: from localhost ([::1]:49723 helo=lists.gnu.org) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1gS5qU-0001V4-GX for patchwork@mira.cbaines.net; Wed, 28 Nov 2018 14:50:02 -0500 Received: from eggs.gnu.org ([2001:4830:134:3::10]:59804) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1gS5pc-00016Y-2G for guix-patches@gnu.org; Wed, 28 Nov 2018 14:49:09 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1gS5pX-0004eI-4n for guix-patches@gnu.org; Wed, 28 Nov 2018 14:49:08 -0500 Received: from debbugs.gnu.org ([208.118.235.43]:49543) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1gS5pW-0004dV-5j for guix-patches@gnu.org; Wed, 28 Nov 2018 14:49:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1gS5pW-0007Jj-1b for guix-patches@gnu.org; Wed, 28 Nov 2018 14:49:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#33545] [PATCH 1/2] gnu: petsc-openmpi: Configure with support for HYPRE preconditioner. References: <1543434150-32152-1-git-send-email-pgarlick@tourbillion-technology.com> In-Reply-To: <1543434150-32152-1-git-send-email-pgarlick@tourbillion-technology.com> Resent-From: Paul Garlick Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 28 Nov 2018 19:49:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 33545 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 33545@debbugs.gnu.org Received: via spool by 33545-submit@debbugs.gnu.org id=B33545.154343453828113 (code B ref 33545); Wed, 28 Nov 2018 19:49:01 +0000 Received: (at 33545) by debbugs.gnu.org; 28 Nov 2018 19:48:58 +0000 Received: from localhost ([127.0.0.1]:53801 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gS5pR-0007JM-SL for submit@debbugs.gnu.org; Wed, 28 Nov 2018 14:48:58 -0500 Received: from smtp.hosts.co.uk ([85.233.160.19]:19734) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gS5pQ-0007J4-2h for 33545@debbugs.gnu.org; Wed, 28 Nov 2018 14:48:56 -0500 Received: from [79.123.23.187] (helo=parkin.tourbillion-technology.com.com) by smtp.hosts.co.uk with esmtpsa (TLSv1.2:ECDHE-RSA-AES128-GCM-SHA256:128) (Exim) (envelope-from ) id 1gS5pJ-0003Pw-CE; Wed, 28 Nov 2018 19:48:50 +0000 From: Paul Garlick Date: Wed, 28 Nov 2018 19:48:19 +0000 Message-Id: <1543434500-32200-1-git-send-email-pgarlick@tourbillion-technology.com> X-Mailer: git-send-email 1.8.3.1 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 208.118.235.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: Paul Garlick Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hypre-openmpi. [arguments]: Add 'with-hypre=1' flag. --- gnu/packages/maths.scm | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 0cf8916..85af458 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1767,6 +1767,7 @@ scientific applications modeled by partial differential equations.") (name "petsc-openmpi") (inputs `(("hdf5" ,hdf5-parallel-openmpi) + ("hypre" ,hypre-openmpi) ("metis" ,metis) ("mumps" ,mumps-openmpi) ("openmpi" ,openmpi) @@ -1776,7 +1777,8 @@ scientific applications modeled by partial differential equations.") (arguments (substitute-keyword-arguments (package-arguments petsc) ((#:configure-flags cf) - ``("--with-mpiexec=mpirun" + ``("--with-hypre=1" + "--with-mpiexec=mpirun" "--with-metis=1" "--with-mumps=1" "--with-scalapack=1" From patchwork Wed Nov 28 19:48:20 2018 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Paul Garlick X-Patchwork-Id: 343 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 31D1C16862; Wed, 28 Nov 2018 19:50:13 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-6.9 required=5.0 tests=BAYES_00,RCVD_IN_DNSWL_HI autolearn=unavailable autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [IPv6:2001:4830:134:3::11]) by mira.cbaines.net (Postfix) with ESMTPS id E583D16860 for ; Wed, 28 Nov 2018 19:50:12 +0000 (GMT) Received: from localhost ([::1]:49727 helo=lists.gnu.org) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1gS5qd-0001YV-Uj for patchwork@mira.cbaines.net; Wed, 28 Nov 2018 14:50:11 -0500 Received: from eggs.gnu.org ([2001:4830:134:3::10]:60170) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1gS5qY-0001Xz-N2 for guix-patches@gnu.org; Wed, 28 Nov 2018 14:50:07 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1gS5qW-0005cG-Oc for guix-patches@gnu.org; Wed, 28 Nov 2018 14:50:06 -0500 Received: from debbugs.gnu.org ([208.118.235.43]:49547) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1gS5qU-0005a4-ON for guix-patches@gnu.org; Wed, 28 Nov 2018 14:50:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1gS5qU-0007Lo-HS for guix-patches@gnu.org; Wed, 28 Nov 2018 14:50:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#33545] [PATCH 2/2] gnu: fenics: Skip extra demo in 'check' phase. Resent-From: Paul Garlick Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 28 Nov 2018 19:50:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 33545 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 33545@debbugs.gnu.org Received: via spool by 33545-submit@debbugs.gnu.org id=B33545.154343454828168 (code B ref 33545); Wed, 28 Nov 2018 19:50:02 +0000 Received: (at 33545) by debbugs.gnu.org; 28 Nov 2018 19:49:08 +0000 Received: from localhost ([127.0.0.1]:53805 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gS5pc-0007KF-6t for submit@debbugs.gnu.org; Wed, 28 Nov 2018 14:49:08 -0500 Received: from smtp.hosts.co.uk ([85.233.160.19]:19766) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gS5pa-0007JY-3I for 33545@debbugs.gnu.org; Wed, 28 Nov 2018 14:49:06 -0500 Received: from [79.123.23.187] (helo=parkin.tourbillion-technology.com.com) by smtp.hosts.co.uk with esmtpsa (TLSv1.2:ECDHE-RSA-AES128-GCM-SHA256:128) (Exim) (envelope-from ) id 1gS5pU-0003Pw-AL; Wed, 28 Nov 2018 19:49:00 +0000 From: Paul Garlick Date: Wed, 28 Nov 2018 19:48:20 +0000 Message-Id: <1543434500-32200-2-git-send-email-pgarlick@tourbillion-technology.com> X-Mailer: git-send-email 1.8.3.1 In-Reply-To: <1543434500-32200-1-git-send-email-pgarlick@tourbillion-technology.com> References: <1543434500-32200-1-git-send-email-pgarlick@tourbillion-technology.com> X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 208.118.235.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: Paul Garlick Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/simulation.scm (fenics)[arguments]: Add 'curl-curl' demo to list of demos that require meshes supplied by git-lfs. --- gnu/packages/simulation.scm | 1 + 1 file changed, 1 insertion(+) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index 6144e23..bbe6d53 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -639,6 +639,7 @@ user interface to the FEniCS core components and external libraries.") "'lift-drag', \n" "'elastodynamics', \n" "'dg-advection-diffusion', \n" + "'curl-curl', \n" "'contact-vi-tao', \n" "'contact-vi-snes', \n" "'collision-detection', \n"