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envelope-from=Navid.Afkhami@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-scape): New variable. --- gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) base-commit: f25529b08e356f89ca7cecc44295085531a8faba prerequisite-patch-id: 363753ddc688e6cabad38e734df71a8fc2774458 prerequisite-patch-id: 7a61ca6199d8527299904ca6a1691387629363ac prerequisite-patch-id: d7776816705dad2e89c2cbba5ef60c8bb63f9072 prerequisite-patch-id: 1840e69d148593f714371b464fa5a8c4186f3e9a prerequisite-patch-id: 76e9473ae6bbeb3211f0d5a87d2f8a326858196a prerequisite-patch-id: adfedba2ecd3adf84a823fdcbd7e10d1008bda5e prerequisite-patch-id: 9f9fc73cc14add726decfc2ccf363ecd5f2d3b70 prerequisite-patch-id: 193a6447f90d6367cf2f8172b449b3f21eb5ae49 prerequisite-patch-id: e6d376726ae9bfc12c6f78ff5b42631135ba6257 prerequisite-patch-id: 638104f69e1f31bd61e397b557c586a1172802c0 prerequisite-patch-id: 8321754f27c7e2b1debec8f44a877eb5606c3075 prerequisite-patch-id: 57b54fcd4a657e74f95e544a3ed7e690f0f8eda6 prerequisite-patch-id: 318700c21a28feca889a3c42b2e771f3f3074ee7 diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9de0470f7e..da3e1d10dc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -17310,6 +17310,31 @@ (define-public r-scopeloomr files.") (license license:expat)))) +(define-public r-scape + (package + (name "r-scape") + (version "2.0.1") + (source (origin + (method url-fetch) + (uri (string-append + "http://eddylab.org/software/rscape/rscape.tar.gz")) + (sha256 + (base32 + "1jabvm3fzh8iy4803ns12v1fsy28x6wdy8wx4ik8y0mfac4h787q")))) + (build-system gnu-build-system) + (propagated-inputs (list gsl openmpi)) + (native-inputs (list automake autoconf)) + (home-page "https://github.com/EddyRivasLab/R-scape") + (synopsis "RNA structural covariation above phylogenetic expectation") + (description + "R-scape discovers RNA secondary structure consensus elements. +These elements include riboswitches and ribozymes. It utilizes +probabilistic modeling of sequence alignments, explicitly +considering folding dependencies. The tool enables the +de novo search for new structural elements and facilitates +comparative analysis of known RNA families.") + (license license:bsd-3))) + (define-public r-seurat-utils (let ((commit "0b6f5b548a49148cfbeaa654e8a618c0a020afa5") (revision "1"))