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(license license:gpl2))) +(define-public r-mbecs + (package + (name "r-mbecs") + (version "1.4.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "MBECS" version)) + (sha256 + (base32 "0gfr3c5k7xjd342zfdksgh22mrk3ryr4cp89nar0mlpgzxg4l4vz")))) + (properties `((upstream-name . "MBECS"))) + (build-system r-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'set-HOME + ;; Fontconfig needs an writable cache + (lambda _ (setenv "HOME" "/tmp")))))) + (propagated-inputs + (list r-cluster + r-dplyr + r-ggplot2 + r-gridextra + r-limma + r-lme4 + r-lmertest + r-magrittr + r-markdown + r-matrix + r-pheatmap + r-phyloseq + r-rmarkdown + r-ruv + r-sva + r-tibble + r-tidyr + r-vegan)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/rmolbrich/MBECS") + (synopsis + "Evaluation and correction of batch effects in microbiome data-sets") + (description + "The @acronym{MBECS, Microbiome Batch Effect Correction Suite} provides a +set of functions to evaluate and mitigate unwated noise due to processing in +batches. To that end it incorporates a host of batch correcting algorithms +(BECA) from various packages. In addition it offers a correction and reporting +pipeline that provides a preliminary look at the characteristics of a data-set +before and after correcting for batch effects.") + (license license:artistic2.0))) + (define-public r-mbkmeans (package (name "r-mbkmeans")