From patchwork Sun May 21 03:02:05 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 50194 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id EEB3327BBE2; Sun, 21 May 2023 04:03:48 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 011D927BBE9 for ; Sun, 21 May 2023 04:03:47 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1q0ZLc-0002nY-2z; Sat, 20 May 2023 23:03:04 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1q0ZLb-0002nB-BX for guix-patches@gnu.org; Sat, 20 May 2023 23:03:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1q0ZLa-00085m-U0 for guix-patches@gnu.org; Sat, 20 May 2023 23:03:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1q0ZLa-00018T-PS for guix-patches@gnu.org; Sat, 20 May 2023 23:03:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#63621] [PATCH 1/6] gnu: Add python-linear-operator. References: <20230521025911.1278475-1-monego@posteo.net> In-Reply-To: <20230521025911.1278475-1-monego@posteo.net> Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 21 May 2023 03:03:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 63621 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 63621@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 63621-submit@debbugs.gnu.org id=B63621.16846381704312 (code B ref 63621); Sun, 21 May 2023 03:03:02 +0000 Received: (at 63621) by debbugs.gnu.org; 21 May 2023 03:02:50 +0000 Received: from localhost ([127.0.0.1]:59735 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0ZLO-00017R-Bb for submit@debbugs.gnu.org; Sat, 20 May 2023 23:02:50 -0400 Received: from mout02.posteo.de ([185.67.36.66]:41927) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0ZLL-00017A-QX for 63621@debbugs.gnu.org; Sat, 20 May 2023 23:02:48 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id B44FD240101 for <63621@debbugs.gnu.org>; Sun, 21 May 2023 05:02:41 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684638161; bh=GLD8kSrSphIqrxnUZb1rZQE/EyhvgB7+SPifdbmvduc=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=lRS4qZrzYie9sxdImospfxzzLPbgWyl+GuBoB1SZ9qWNJ7FVUxqS0vD+REmyqTVHy a8GLIxmRvV1M10AluZEL7a9aZXYGV9/rjL0anzdJa3TX4TmN4+2j9hQksceeklT4fs 4b48tlyEDsWy/9yfMkGBPqcgaJ+8zItfLGla+TFNXtQ6OGP6rLNH202V80FykZhdKS WBS/d3msaT6NqXbl4L7mT4mq1GTeAxePRtOifysSipWbkYNiSN4mVGRqGos/KbmoR0 T8rR9xqMYCMNXJFeSJJtRJPOzN8ktjNx2uV+hyTIugyNqzNi/58io46oFMvnFrvxDk yoHS1OAgf8MGA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QP53h3fnLz9rxG; Sun, 21 May 2023 05:02:40 +0200 (CEST) From: Vinicius Monego Date: Sun, 21 May 2023 03:02:05 +0000 Message-Id: <20230521030210.1282819-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/machine-learning.scm (python-linear-operator): New variable. --- gnu/packages/machine-learning.scm | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 694b050e86..de06b4988a 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -4080,6 +4080,25 @@ (define-public python-pyro-ppl inference.") (license license:asl2.0))) +(define-public python-linear-operator + (package + (name "python-linear-operator") + (version "0.4.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "linear_operator" version)) + (sha256 + (base32 + "1ipm154n8cxnl35i8wrx650a60yxyhjpdpdl1mf7ijaqybwcjmvw")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-pytorch python-scipy)) + (native-inputs (list python-flake8 python-flake8-print python-twine)) + (home-page "https://github.com/cornellius-gp/linear_operator/") + (synopsis "Linear operator implementation") + (description "LinearOperator is a PyTorch package for abstracting away the +linear algebra routines needed for structured matrices (or operators).") + (license license:expat))) + (define-public vosk-api (let* ((openfst openfst-for-vosk) (kaldi kaldi-for-vosk)) From patchwork Sun May 21 03:02:06 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 50192 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 235B927BBE9; Sun, 21 May 2023 04:03:31 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 16F0D27BBE2 for ; Sun, 21 May 2023 04:03:29 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1q0ZLe-0002og-Dw; Sat, 20 May 2023 23:03:06 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1q0ZLb-0002nF-HP for guix-patches@gnu.org; Sat, 20 May 2023 23:03:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1q0ZLb-00085u-9K for guix-patches@gnu.org; Sat, 20 May 2023 23:03:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1q0ZLb-00018a-4j for guix-patches@gnu.org; Sat, 20 May 2023 23:03:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#63621] [PATCH 2/6] gnu: Add python-gpytorch. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 21 May 2023 03:03:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 63621 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 63621@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 63621-submit@debbugs.gnu.org id=B63621.16846381754329 (code B ref 63621); Sun, 21 May 2023 03:03:03 +0000 Received: (at 63621) by debbugs.gnu.org; 21 May 2023 03:02:55 +0000 Received: from localhost ([127.0.0.1]:59738 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0ZLS-00017k-Nf for submit@debbugs.gnu.org; Sat, 20 May 2023 23:02:55 -0400 Received: from mout02.posteo.de ([185.67.36.66]:49627) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0ZLR-00017K-Ra for 63621@debbugs.gnu.org; Sat, 20 May 2023 23:02:54 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id 5B128240101 for <63621@debbugs.gnu.org>; Sun, 21 May 2023 05:02:48 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684638168; bh=zg6HPR76YECdyn4j7ydxlZYrM0M7xhtMonHaAbLbku0=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=FECEXD3VstvwhUEhOVZNxSXGoE7qnhPIQzcx4thGry7yWxGtQJWFaUdPOsAhP6JJJ gHSuyYO4sIutscrTgponuAUjuqSXa/8ZInxNpL6vRNeQYM3ITXuEM7aWVolQTNycC1 SJE82+ykbhOdq13w4+1bstM6jm6PdSOatE/sOu8f0scwpyCPCWKPLr9umb1yRxL2bU F8+qkA8dg2mcqzXiC6FJX1deHad98oqCRKn6tTxmkiXbIglZZ0Pxx6ysHb2oKHJSY+ B2qztVqJYJd/uNXG9vcr7b2ZmTsvRE4zWzdZu09SvWmC9yDuZhBmYbmgCCFAnKBO1T LLud37D0EEeKw== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QP53p3vHlz9rxG; Sun, 21 May 2023 05:02:46 +0200 (CEST) From: Vinicius Monego Date: Sun, 21 May 2023 03:02:06 +0000 Message-Id: <20230521030210.1282819-2-monego@posteo.net> In-Reply-To: <20230521030210.1282819-1-monego@posteo.net> References: <20230521030210.1282819-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/machine-learning.scm (python-gpytorch): New variable. --- gnu/packages/machine-learning.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index de06b4988a..f4b59556bc 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -4099,6 +4099,33 @@ (define-public python-linear-operator linear algebra routines needed for structured matrices (or operators).") (license license:expat))) +(define-public python-gpytorch + (package + (name "python-gpytorch") + (version "1.10") + (source (origin + (method url-fetch) + (uri (pypi-uri "gpytorch" version)) + (sha256 + (base32 + "063zzc515xip3d11y21ld47ca3qq0hqs27jgba20l8mzkympijbd")))) + (build-system pyproject-build-system) + (arguments + ;; This test failed. + (list #:test-flags #~'("-k" "not test_deprecated_methods"))) + (propagated-inputs (list python-linear-operator python-scikit-learn)) + (native-inputs (list python-coverage + python-flake8 + python-flake8-print + python-nbval + python-pytest + python-twine)) + (home-page "https://gpytorch.ai") + (synopsis "Implementation of Gaussian Processes in Pytorch") + (description + "GPyTorch is a Gaussian process library implemented using PyTorch.") + (license license:expat))) + (define-public vosk-api (let* ((openfst openfst-for-vosk) (kaldi kaldi-for-vosk)) From patchwork Sun May 21 03:02:07 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 50193 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 8A09927BBEC; Sun, 21 May 2023 04:03:47 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id F132427BBE2 for ; Sun, 21 May 2023 04:03:46 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1q0ZLd-0002oB-EH; Sat, 20 May 2023 23:03:05 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1q0ZLb-0002nX-W1 for guix-patches@gnu.org; Sat, 20 May 2023 23:03:04 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1q0ZLb-000863-OO for guix-patches@gnu.org; Sat, 20 May 2023 23:03:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1q0ZLb-00018h-JE for guix-patches@gnu.org; Sat, 20 May 2023 23:03:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#63621] [PATCH 3/6] gnu: python-pyro-ppl: Update to 1.8.4. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 21 May 2023 03:03:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 63621 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 63621@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 63621-submit@debbugs.gnu.org id=B63621.16846381804349 (code B ref 63621); Sun, 21 May 2023 03:03:03 +0000 Received: (at 63621) by debbugs.gnu.org; 21 May 2023 03:03:00 +0000 Received: from localhost ([127.0.0.1]:59741 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0ZLY-000185-3O for submit@debbugs.gnu.org; Sat, 20 May 2023 23:03:00 -0400 Received: from mout02.posteo.de ([185.67.36.66]:34833) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0ZLW-00017e-V2 for 63621@debbugs.gnu.org; Sat, 20 May 2023 23:02:59 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id 75405240101 for <63621@debbugs.gnu.org>; Sun, 21 May 2023 05:02:53 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684638173; bh=8MLMSKTXSqcAa8+TBSPyQFOGi3ozzzBnxq+DnPgWwok=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=kOHbg7lSRXvWRPCN+YcR+kSRCO7q1x0MNdYRzL3naOgnshKTsvpe0nNMXeUSFYOwB AtHynyO5HVwIiG4+bnCDllL1lOmbM5efYmF5ZyOvbDS+rUfueAA2zvw4fyR2gVQP26 fxCrbUTsUs4XbQvVi1Oqu+4kgLs77bADjvnoEqms++8nexxsy5s8PXWDKiEahcJOBn abGbCeyO8dp37rRyzugOmRl5N60FMxZJ/taXiw7LdYXtf8Tobz0CfbYY0vzsPrPgL/ aE3R/caOwFK2JneGtdKMFly06B+ix/47E41UunDW7xjUc3qNi4TuELI1nFvVlcnUqp HA8OpBPtkywOw== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QP53w4FKfz9rxG; Sun, 21 May 2023 05:02:52 +0200 (CEST) From: Vinicius Monego Date: Sun, 21 May 2023 03:02:07 +0000 Message-Id: <20230521030210.1282819-3-monego@posteo.net> In-Reply-To: <20230521030210.1282819-1-monego@posteo.net> References: <20230521030210.1282819-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/machine-learning.scm (python-pyro-ppl): Update to 1.8.4. --- gnu/packages/machine-learning.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index f4b59556bc..90bfe283a2 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -4009,7 +4009,7 @@ (define-public python-pyro-api (define-public python-pyro-ppl (package (name "python-pyro-ppl") - (version "1.8.1") + (version "1.8.4") ;; The sources on pypi don't include tests. (source (origin @@ -4019,7 +4019,7 @@ (define-public python-pyro-ppl (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0ns20mr8qgjshzbplrfzaz1xhb9ldbgvrj2rzlsxvns2bi1ddyl5")))) + (base32 "1h00i847dsggiw9mmvjbi4nacpjbyqi5wjqg5gbfnmzimhdrgp77")))) (build-system python-build-system) (arguments `(#:phases From patchwork Sun May 21 03:02:08 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 50195 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 478F027BBEA; Sun, 21 May 2023 04:04:10 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 965CA27BBE2 for ; Sun, 21 May 2023 04:04:09 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1q0ZMe-00035G-KW; Sat, 20 May 2023 23:04:08 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1q0ZMZ-000330-L5 for guix-patches@gnu.org; Sat, 20 May 2023 23:04:04 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1q0ZMY-0008Ft-4M for guix-patches@gnu.org; Sat, 20 May 2023 23:04:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1q0ZMX-0001Ar-W4 for guix-patches@gnu.org; Sat, 20 May 2023 23:04:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#63621] [PATCH 4/6] gnu: Add python-botorch. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 21 May 2023 03:04:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 63621 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 63621@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 63621-submit@debbugs.gnu.org id=B63621.16846381864413 (code B ref 63621); Sun, 21 May 2023 03:04:01 +0000 Received: (at 63621) by debbugs.gnu.org; 21 May 2023 03:03:06 +0000 Received: from localhost ([127.0.0.1]:59748 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0ZLe-000197-Bn for submit@debbugs.gnu.org; Sat, 20 May 2023 23:03:06 -0400 Received: from mout01.posteo.de ([185.67.36.65]:35309) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0ZLc-00017y-EC for 63621@debbugs.gnu.org; Sat, 20 May 2023 23:03:04 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id B5028240027 for <63621@debbugs.gnu.org>; Sun, 21 May 2023 05:02:58 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684638178; bh=bQtxZuN/6XGN7HM44PrZUz4IDZSzcTbgi+gW+kQl78Y=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=jBVV73H5+cbzc1RpdrccQR4ceS7LTXRkZnjhAqSBSMy5fXhl9en77UIbWlrgMsiaw jZs937JEr21Nxbp9dbCpiH7b9T6JUL0biNl36FeDAHFiS3nRaROjo3Pty/j3QMtsic nrtOX3Q6l74To+qXaskBYIKcIcN1osAIgLr+5waW9NX/FmnqOIacrHTg8tev1m5YIY 8JnsgIGG8diKvZQC9T4YaVM+XPZ+jHT0/1YqyzDr4NZ/Axp/h78dS/gtfdjc2Y1H+K UcphCkvo/Ng3c6yqqbktzNGo0OhJcpiLUd4v/tBMhPGEe20Zg+zD9CWNNMYS7mQMWU MSgVSChdZvf6w== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QP5416Gdkz9rxH; Sun, 21 May 2023 05:02:56 +0200 (CEST) From: Vinicius Monego Date: Sun, 21 May 2023 03:02:08 +0000 Message-Id: <20230521030210.1282819-4-monego@posteo.net> In-Reply-To: <20230521030210.1282819-1-monego@posteo.net> References: <20230521030210.1282819-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/machine-learning.scm (python-botorch): New variable. --- gnu/packages/machine-learning.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 90bfe283a2..1e34e5fd5e 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -4126,6 +4126,34 @@ (define-public python-gpytorch "GPyTorch is a Gaussian process library implemented using PyTorch.") (license license:expat))) +(define-public python-botorch + (package + (name "python-botorch") + (version "0.8.5") + (source (origin + (method git-fetch) ;no tests in PyPI + (uri (git-reference + (url "https://github.com/pytorch/botorch") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1xa98xy5wx0mf6fx62lx5cy84svi695iwcg4n74z4f9wz60lghsm")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-gpytorch + python-linear-operator + python-multipledispatch + python-pyro-ppl + python-scipy + python-pytorch)) + (native-inputs (list python-black python-flake8 python-pytest + python-pytest-cov python-sphinx)) + (home-page "https://botorch.org") + (synopsis "Bayesian Optimization in PyTorch") + (description + "BoTorch is a library for Bayesian Optimization built on PyTorch.") + (license license:expat))) + (define-public vosk-api (let* ((openfst openfst-for-vosk) (kaldi kaldi-for-vosk)) From patchwork Sun May 21 03:02:09 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 50196 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 40B3627BBE9; Sun, 21 May 2023 04:04:27 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 02F3E27BBE2 for ; Sun, 21 May 2023 04:04:26 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1q0ZMe-00035F-KU; Sat, 20 May 2023 23:04:08 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1q0ZMZ-00033A-Lq for guix-patches@gnu.org; Sat, 20 May 2023 23:04:04 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1q0ZMY-0008Fw-I2 for guix-patches@gnu.org; Sat, 20 May 2023 23:04:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1q0ZMY-0001Ay-DL for guix-patches@gnu.org; Sat, 20 May 2023 23:04:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#63621] [PATCH 5/6] gnu: Add python-yappi. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 21 May 2023 03:04:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 63621 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 63621@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 63621-submit@debbugs.gnu.org id=B63621.16846381934434 (code B ref 63621); Sun, 21 May 2023 03:04:02 +0000 Received: (at 63621) by debbugs.gnu.org; 21 May 2023 03:03:13 +0000 Received: from localhost ([127.0.0.1]:59751 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0ZLk-00019R-Lu for submit@debbugs.gnu.org; Sat, 20 May 2023 23:03:12 -0400 Received: from mout02.posteo.de ([185.67.36.66]:37143) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0ZLi-000195-Ga for 63621@debbugs.gnu.org; Sat, 20 May 2023 23:03:10 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id 04BD6240101 for <63621@debbugs.gnu.org>; Sun, 21 May 2023 05:03:05 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684638185; bh=qcewtbccOTwLevMacvY31b24DL4VB6aVtVU9YNaTVIs=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=TuQ9V9KbKo3XUjZOwoh00r1QDPiBvQUgWdBoEbRoLBI72kw14LrLqHlEzEjGQiD5r OI6x/u+WLUeW5HL8/hxNFT0doolts0PCnZym6WBRvs1MC94wXBfpJwftFQ+RRYat65 wJHBrWrWYtCrpND90ke8NAN6P+j92U4EnGbqJZ/V1bCj1edQfJvfnhQwyA/yeM1XnX RnN0thpzeZq1QZFo8/rksqbJtwa/g5tw6dFaUIup6ccu3q6bvALOAWZmZiPCbqsabN mYWrriPVoL8yWLgMLooQztk5OI40weC1b9Z3b+X6d64qUnvVv1qJH4I5D3e5kmJN3p 43kTe0Huvdo9g== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QP5470LQ8z9rxF; Sun, 21 May 2023 05:03:02 +0200 (CEST) From: Vinicius Monego Date: Sun, 21 May 2023 03:02:09 +0000 Message-Id: <20230521030210.1282819-5-monego@posteo.net> In-Reply-To: <20230521030210.1282819-1-monego@posteo.net> References: <20230521030210.1282819-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-xyz.scm (python-yappi): New variable. --- gnu/packages/python-xyz.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 9ee45ab525..c7a31e40a1 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -3299,6 +3299,30 @@ (define-public python-openpyxl standard.") (license license:expat))) +(define-public python-yappi + (package + (name "python-yappi") + (version "1.4.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "yappi" version)) + (sha256 + (base32 + "1h3zl60pi57ynb3sw7sg2wcn157jwz992y95bv5kcds3qy7msjsh")))) + (build-system pyproject-build-system) + (native-inputs (list python-gevent)) + (arguments + (list #:phases #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "run_tests.py"))))))) + (home-page "https://github.com/sumerc/yappi") + (synopsis "Yet Another Python Profiler") + (description "Yappi is a tracing profiler that is multithreading, asyncio +and gevent aware.") + (license license:expat))) + (define-public python-eventlet (package (name "python-eventlet") From patchwork Sun May 21 03:02:10 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 50197 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 094CB27BBEA; Sun, 21 May 2023 04:04:35 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 5440327BBE2 for ; Sun, 21 May 2023 04:04:34 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1q0ZMe-000362-R0; Sat, 20 May 2023 23:04:08 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1q0ZMZ-00032v-JH for guix-patches@gnu.org; Sat, 20 May 2023 23:04:04 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1q0ZMY-0008G4-VE for guix-patches@gnu.org; Sat, 20 May 2023 23:04:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1q0ZMY-0001B5-Pu for guix-patches@gnu.org; Sat, 20 May 2023 23:04:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#63621] [PATCH 6/6] gnu: Add python-ax-platform. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 21 May 2023 03:04:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 63621 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 63621@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 63621-submit@debbugs.gnu.org id=B63621.16846382024459 (code B ref 63621); Sun, 21 May 2023 03:04:02 +0000 Received: (at 63621) by debbugs.gnu.org; 21 May 2023 03:03:22 +0000 Received: from localhost ([127.0.0.1]:59754 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0ZLu-00019q-0I for submit@debbugs.gnu.org; Sat, 20 May 2023 23:03:22 -0400 Received: from mout02.posteo.de ([185.67.36.66]:42021) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0ZLr-00019a-HT for 63621@debbugs.gnu.org; Sat, 20 May 2023 23:03:20 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id 0D8B8240101 for <63621@debbugs.gnu.org>; Sun, 21 May 2023 05:03:14 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684638194; bh=FeLI80ayTSH8r/1588yJxtW7UVcYDswpelIhmuhyiLU=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=VH1tOqxBUuejz384OETBSWsXfH6KAfnEVbhuzTAXOoEFCyI2ls6Hsl3d7cHbzKZqj +yfYymB8E88n5lEQUE1wBwxuQA50h7DJknN2Rh+6NIP5Dc1+NMQiPP7oZLaFec3ohh jq6yUWTYiTR8oh881QpWHpN5McQ5CHkjJQ/RZyUTZAa+prVoGnbDqC2I0ThPaW7LDF 5uMYrPlE04d/txax854IlWzPmKhcn2pefk3bw2OdwcEC7lIsS2DW8fEgTYnnfqqDjW bteZ2o+47IuG4fS5zvZEN2PlIBpwTUCjMYU7xnu6vLbG6vA0Y2SpIhzb7gvO9iyGN0 Qmc0ilToiikGA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QP54J5269z9rxF; Sun, 21 May 2023 05:03:12 +0200 (CEST) From: Vinicius Monego Date: Sun, 21 May 2023 03:02:10 +0000 Message-Id: <20230521030210.1282819-6-monego@posteo.net> In-Reply-To: <20230521030210.1282819-1-monego@posteo.net> References: <20230521030210.1282819-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/machine-learning.scm (python-ax-platform): New variable. --- gnu/packages/machine-learning.scm | 56 +++++++++++++++++++++++++++++++ 1 file changed, 56 insertions(+) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 1e34e5fd5e..384c980478 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -4154,6 +4154,62 @@ (define-public python-botorch "BoTorch is a library for Bayesian Optimization built on PyTorch.") (license license:expat))) +(define-public python-ax-platform + (package + (name "python-ax-platform") + (version "0.3.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "ax-platform" version)) + (sha256 + (base32 + "1spyp8wjf0jyh7yf002sl4lc1rwbnzdki9ql9a3nzsyyx602flj8")))) + (build-system pyproject-build-system) + (arguments + ;; Ignore tests for tensorboard and torchx, which we don't have. + (list #:test-flags + #~(list "--ignore" "ax/metrics/tests/test_tensorboard.py" + "--ignore" "ax/runners/tests/test_torchx.py" + ;; This test tries to download online data. + "-k" "not test_torchvision_encode_decode") + ;; Ax checks for typeguard==2.13.3 which is the version we have, + ;; but the version report in typeguard is fault and displays 0.0.0. + #:phases #~(modify-phases %standard-phases + (delete 'sanity-check)))) + (propagated-inputs (list python-botorch + python-ipywidgets + python-jinja2 + python-pandas + python-plotly + python-scikit-learn + python-scipy + python-typeguard)) + (native-inputs (list jupyter + python-beautifulsoup4 + python-black + python-flake8 + python-hypothesis + python-jinja2 + python-jupyter-client + python-mypy + python-nbconvert + python-pyfakefs + python-pyre-extensions + python-pytest + python-pytest-cov + python-sqlalchemy + python-torchvision + python-yappi)) + (home-page "https://ax.dev/") + (synopsis "Adaptive Experimentation Platform") + (description + "Ax is an accessible, general-purpose platform for +understanding, managing, deploying, and automating adaptive experiments. +Adaptive experimentation is the machine-learning guided process of +iteratively exploring a (possibly infinite) parameter space in order to +identify optimal configurations in a resource-efficient manner.") + (license license:expat))) + (define-public vosk-api (let* ((openfst openfst-for-vosk) (kaldi kaldi-for-vosk))