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MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/bioinformatics.scm (bpp-seq): Update to 2.4.1. [source]: Remove the commit and use the release version. Changed to the github repo. [arguments]: Remove the disabled parallel-build and out-of-source. [home-page]: Changed to new host Université Claude-Bernard Lyon 1. --- gnu/packages/bioinformatics.scm | 48 +++++++++++++-------------------- 1 file changed, 19 insertions(+), 29 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 351387fb06..232d0e42c6 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2308,37 +2308,27 @@ (define-public bpp-popgen (license license:cecill-c)))) (define-public bpp-seq - ;; The last release was in 2014 and the recommended way to install from source - ;; is to clone the git repository, so we do this. - ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page - (let ((commit "6cfa07965ce152e5598a89df2fa80a75973bfa33")) - (package - (name "bpp-seq") - (version (string-append "2.2.0-1." (string-take commit 7))) - (source (origin - (method git-fetch) - (uri (git-reference - (url "http://biopp.univ-montp2.fr/git/bpp-seq") - (commit commit))) - (file-name (string-append name "-" version "-checkout")) - (sha256 - (base32 - "1nys5jq7jqvdg40d91wsmj3q2yzy4276cp7sp44n67p468f27zf2")))) - (build-system cmake-build-system) - (arguments - `(#:parallel-build? #f - ;; If out-of-source, test data is not copied into the build directory - ;; so the tests fail. - #:out-of-source? #f)) - (inputs - (list bpp-core)) - (home-page "http://biopp.univ-montp2.fr") - (synopsis "Bio++ sequence library") - (description - "Bio++ is a set of C++ libraries for Bioinformatics, including sequence + (package + (name "bpp-seq") + (version "2.4.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/BioPP/bpp-seq") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1mc09g8jswzsa4wgrfv59jxn15ys3q8s0227p1j838wkphlwn2qk")))) + (build-system cmake-build-system) + (inputs + (list bpp-core)) + (home-page "https://pbil.univ-lyon1.fr/bpp-doc/bpp-seq/html/") + (synopsis "Bio++ sequence library") + (description + "Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. This library provides sequence-related modules.") - (license license:cecill-c)))) + (license license:cecill-c))) (define-public bppsuite ;; The last release was in 2014 and the recommended way to install from source