From patchwork Sat Apr 1 04:57:00 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: kyle X-Patchwork-Id: 48895 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 892F7172D1; Sat, 1 Apr 2023 05:58:34 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id DADF5172C2 for ; Sat, 1 Apr 2023 05:58:33 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1piTJV-0006qb-51; Sat, 01 Apr 2023 00:58:05 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1piTJT-0006q5-9k for guix-patches@gnu.org; Sat, 01 Apr 2023 00:58:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1piTJT-0004c8-1a for guix-patches@gnu.org; Sat, 01 Apr 2023 00:58:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1piTJS-00060L-Iy for guix-patches@gnu.org; Sat, 01 Apr 2023 00:58:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#62579] [PATCH 1/3] gnu: Add r-targets package Resent-From: kyle Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 01 Apr 2023 04:58:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62579 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 62579@debbugs.gnu.org Cc: rekado@elephly.net, Kyle Andrews Received: via spool by 62579-submit@debbugs.gnu.org id=B62579.168032504223010 (code B ref 62579); Sat, 01 Apr 2023 04:58:02 +0000 Received: (at 62579) by debbugs.gnu.org; 1 Apr 2023 04:57:22 +0000 Received: from localhost ([127.0.0.1]:35095 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1piTIn-0005z3-Le for submit@debbugs.gnu.org; Sat, 01 Apr 2023 00:57:21 -0400 Received: from mout01.posteo.de ([185.67.36.65]:39185) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1piTIm-0005yp-9M for 62579@debbugs.gnu.org; Sat, 01 Apr 2023 00:57:21 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id A4A4A240431 for <62579@debbugs.gnu.org>; Sat, 1 Apr 2023 06:57:14 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1680325034; bh=Lg+c7Yfdw9kB4r2bwYpYty/a4xpbw14DpJga56a64tk=; h=From:To:Cc:Subject:Date:From; b=XpOt0rbQoOJ4fqZIwV4xsRXDRLj65Wvlo5VB0I2w84A1ml/f28TdfGQGztkjSiLDu F9iriB+HuSpEGIlJXLDS5O3IAwzOjAvtemEENN8+IOORc1pMLJ/vSVDMO2ls/wZjWD EIPDKszhZMBPvrF8aXSYRK5aPfAPVEU7teozgidPKLD4S4X6P9TpYSNXkfoq/EE1AT 3RduQcrIjrrU0QfI5k0kNT+9HsubTfLuU8BVXE+6ZaykWkXuLO2W4/gQYzangjipTR UdJpPJUYWaF2A/rdE/OkAEACeJcKD9u19Vtv1bVASo4C0S62atIM3qla2GFnz/9jKt fSrNqzFnil7TA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4PpPyx13N2z6txT; Sat, 1 Apr 2023 06:57:12 +0200 (CEST) From: kyle Date: Sat, 01 Apr 2023 04:57:00 +0000 Message-Id: <5ae044eb9f0e7fd794a0368b736a66d77a7094d9.1680324055.git.kyle@posteo.net> In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches From: Kyle Andrews --- gnu/packages/cran.scm | 41 +++++++++++++++++++++++++++++++++++++++++ 1 file changed, 41 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f2bdd750ca..3e8ec429e1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14456,6 +14456,47 @@ (define-public r-tab handle data from simple random samples as well as complex surveys.") (license license:gpl3+))) +(define-public r-targets + (package + (name "r-targets") + (version "0.14.3") + (source (origin + (method url-fetch) + (uri (cran-uri "targets" version)) + (sha256 + (base32 + "0mhwvlbxnb4w054pjiw2smss28i90sg52w8v040y7sqy6gq2c8n6")))) + (properties `((upstream-name . "targets"))) + (build-system r-build-system) + (propagated-inputs (list r-base64url + r-callr + r-cli + r-codetools + r-data-table + r-digest + r-igraph + r-knitr + r-r6 + r-rlang + r-tibble + r-tidyselect + r-vctrs + r-withr + r-yaml)) + (native-inputs (list r-knitr)) + (home-page "https://docs.ropensci.org/targets/") + (synopsis "Dynamic Function-Oriented 'Make'-Like Declarative Pipelines") + (description + "This package provides a pipeline toolkit for Statistics and data science in R, +the targets package brings function-oriented programming to Make'-like +declarative pipelines. targets orchestrates a pipeline as a graph of +dependencies, skips steps that are already up to date, runs the necessary +computation with optional parallel workers, abstracts files as R objects, and +provides tangible evidence that the results are reproducible given the +underlying code and data. The methodology in this package borrows from GNU Make +(2015, ISBN:978-9881443519) and drake (2018, ).") + (license license:expat))) + (define-public r-dvmisc (package (name "r-dvmisc") From patchwork Sat Apr 1 04:57:01 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: kyle X-Patchwork-Id: 48893 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id D2485172C9; Sat, 1 Apr 2023 05:58:14 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 2B519172C2 for ; Sat, 1 Apr 2023 05:58:13 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1piTJV-0006r1-Dw; Sat, 01 Apr 2023 00:58:05 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1piTJT-0006q6-AX for guix-patches@gnu.org; Sat, 01 Apr 2023 00:58:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1piTJT-0004cE-2b for guix-patches@gnu.org; Sat, 01 Apr 2023 00:58:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1piTJS-00060S-Uc for guix-patches@gnu.org; Sat, 01 Apr 2023 00:58:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#62579] [PATCH 2/3] gnu: Add r-future-callr Resent-From: kyle Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 01 Apr 2023 04:58:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62579 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 62579@debbugs.gnu.org Cc: rekado@elephly.net, Kyle Andrews Received: via spool by 62579-submit@debbugs.gnu.org id=B62579.168032504823028 (code B ref 62579); Sat, 01 Apr 2023 04:58:02 +0000 Received: (at 62579) by debbugs.gnu.org; 1 Apr 2023 04:57:28 +0000 Received: from localhost ([127.0.0.1]:35098 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1piTIu-0005zM-1M for submit@debbugs.gnu.org; Sat, 01 Apr 2023 00:57:28 -0400 Received: from mout02.posteo.de ([185.67.36.66]:33127) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1piTIr-0005yw-TE for 62579@debbugs.gnu.org; Sat, 01 Apr 2023 00:57:26 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id 02B46240581 for <62579@debbugs.gnu.org>; Sat, 1 Apr 2023 06:57:19 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1680325040; bh=dzyHQSBl7jWGvUbVpJ5ahw25Z7zI3Xu+NNR1So417U8=; h=From:To:Cc:Subject:Date:From; b=emDbMb8XggqhjsvcDv/Awyl4ioUX1cZpk9HaFIIVB/zFPOkqOgVSE27QCeoGrHs5z TqVB74jZzuVnyqCMSWzwOix2cSqHNkoZoaSB0yiZYzkDjMM2tMNy4PXnzO4fETStuJ rZ/gxzhQpxyOciAN9OeaDYMijK+ExwMkx/fyzdm87lfVvdkuilwutFG7UYzvCCDA3D abxn9LtLajFMw9oYjyXoIyPvNghPvyiWAeO7uLVZMaVo2DkvwUF3lYyBv2SIivIHWj S/+rNcQaj5e96t2JazjBQbkbKr3hIPb6JWjFEBFV5Px0FPtdQwF35DlD6emMEIAzdH h2+vtTsWIepPA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4PpPyy67lcz6txT; Sat, 1 Apr 2023 06:57:14 +0200 (CEST) From: kyle Date: Sat, 01 Apr 2023 04:57:01 +0000 Message-Id: <1493a333b0fb7ac47df2c273a47f3d77195145dc.1680324055.git.kyle@posteo.net> In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches From: Kyle Andrews --- gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3e8ec429e1..d2036b0629 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19309,6 +19309,37 @@ (define-public r-future-apply machine or distributed on a compute cluster.") (license license:gpl2+))) +(define-public r-future-callr + (package + (name "r-future-callr") + (version "0.8.1") + (source (origin + (method url-fetch) + (uri (cran-uri "future.callr" version)) + (sha256 + (base32 + "1w7wq2nrvj65a25nsb5h99258p9565qwnlvcc07nyc21gm5zrg9k")))) + (properties `((upstream-name . "future.callr"))) + (build-system r-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'set-HOME + (lambda _ (setenv "HOME" "/tmp")))))) + (propagated-inputs (list r-callr r-future)) + (native-inputs (list r-r-rsp)) + (home-page "https://future.callr.futureverse.org") + (synopsis "Future API for Parallel Processing using 'callr'") + (description + "Implementation of the Future API on top of the callr package. This allows you +to process futures, as defined by the future package, in parallel out of the +box, on your local (Linux, macOS, Windows, ...) machine. Contrary to backends +relying on the parallel package (e.g. future::multisession') and socket +connections, the callr backend provided here can run more than 125 parallel R +processes.") + (license license:lgpl2.1+))) + (define-public r-rsvd (package (name "r-rsvd") From patchwork Sat Apr 1 04:57:02 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: kyle X-Patchwork-Id: 48894 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 3EDC3172D1; Sat, 1 Apr 2023 05:58:29 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 373CA172C2 for ; Sat, 1 Apr 2023 05:58:28 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1piTJW-0006r5-VK; Sat, 01 Apr 2023 00:58:06 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1piTJT-0006qK-Na for guix-patches@gnu.org; Sat, 01 Apr 2023 00:58:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1piTJT-0004cP-Er for guix-patches@gnu.org; Sat, 01 Apr 2023 00:58:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1piTJT-00060a-Ah for guix-patches@gnu.org; Sat, 01 Apr 2023 00:58:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#62579] [PATCH 3/3] gnu: Add r-tarchetypes Resent-From: kyle Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 01 Apr 2023 04:58:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62579 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 62579@debbugs.gnu.org Cc: rekado@elephly.net, Kyle Andrews Received: via spool by 62579-submit@debbugs.gnu.org id=B62579.168032505423047 (code B ref 62579); Sat, 01 Apr 2023 04:58:03 +0000 Received: (at 62579) by debbugs.gnu.org; 1 Apr 2023 04:57:34 +0000 Received: from localhost ([127.0.0.1]:35101 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1piTJ0-0005zf-DZ for submit@debbugs.gnu.org; Sat, 01 Apr 2023 00:57:34 -0400 Received: from mout02.posteo.de ([185.67.36.66]:55949) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1piTIy-0005zL-O8 for 62579@debbugs.gnu.org; Sat, 01 Apr 2023 00:57:33 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id 3E8DA24056D for <62579@debbugs.gnu.org>; Sat, 1 Apr 2023 06:57:27 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1680325047; bh=rQjc/+7O9MTbjkfxKods4aDtDmXptK7REcynauWMjTE=; h=From:To:Cc:Subject:Date:From; b=LsxbTMTmZ33fhGP6dig6NFI+qH3XZtJdnmOZfWYuHgXwvV1YUli+sx5ADKfMWLguc cs7zXXaOxtzedwaly2nTv+9s+xcRCb5PXxvhVVY3pJpTNCQb0MQoiwFX2hv2qN76YC xduGTHMT7KD7aVrPG7rsV+59WPsQrrXGyGQrVnzWXDLnV1w+WO3DtAHLXpfwdqLUVm bYD4LqznyeH88qtFh8beqqY6w0PdNOLK2c4wqieD30pfryfsiAeMzKD8O6/TRa6Roc unq0paJlAHCYJDlWeJyY2XjMLrpYkrlgWooOgUR0L3M8o39AOjDN4e2ijv4kmc9h4t XP0oMWgszMcgA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4PpPz56kWrz6tsg; Sat, 1 Apr 2023 06:57:20 +0200 (CEST) From: kyle Date: Sat, 01 Apr 2023 04:57:02 +0000 Message-Id: In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches From: Kyle Andrews --- gnu/packages/cran.scm | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d2036b0629..56dcf705db 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14456,6 +14456,43 @@ (define-public r-tab handle data from simple random samples as well as complex surveys.") (license license:gpl3+))) + +(define-public r-tarchetypes + (package + (name "r-tarchetypes") + (version "0.7.5") + (source (origin + (method url-fetch) + (uri (cran-uri "tarchetypes" version)) + (sha256 + (base32 + "05yhq8xnrpk37x7fq0yjw4m527ji28s16dskfmljrbrzb064nw2g")))) + (properties `((upstream-name . "tarchetypes"))) + (build-system r-build-system) + (propagated-inputs (list r-digest + r-dplyr + r-fs + r-furrr + r-future + r-future-callr + r-rlang + r-targets + r-tibble + r-tidyselect + r-vctrs + r-withr)) + (home-page "https://docs.ropensci.org/tarchetypes/") + (synopsis "Archetypes for Targets") + (description + "Function-oriented Make-like declarative pipelines for Statistics and data +science are supported in the targets R package. As an extension to targets', +the tarchetypes package provides convenient user-side functions to make targets +easier to use. By establishing reusable archetypes for common kinds of targets +and pipelines, these functions help express complicated reproducible pipelines +concisely and compactly. The methods in this package were influenced by the +drake R package by Will Landau (2018) .") + (license license:expat))) + (define-public r-targets (package (name "r-targets")