From patchwork Sat Mar 25 17:45:52 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 48677 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 101AE16FC4; Sat, 25 Mar 2023 17:47:26 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id CB82216D87 for ; Sat, 25 Mar 2023 17:47:22 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pg7yx-00051D-Nf; Sat, 25 Mar 2023 13:47:11 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pg7yp-0004zN-Ux for guix-patches@gnu.org; Sat, 25 Mar 2023 13:47:04 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pg7yp-0005lf-6G for guix-patches@gnu.org; Sat, 25 Mar 2023 13:47:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pg7yo-00087g-Gx; Sat, 25 Mar 2023 13:47:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#62441] [PATCH 1/4] gnu: Add r-ctrialsgov. References: <968dbc69-60f7-1d7d-a2f2-9e5b2e2deea1@mdc-berlin.de> In-Reply-To: <968dbc69-60f7-1d7d-a2f2-9e5b2e2deea1@mdc-berlin.de> Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Sat, 25 Mar 2023 17:47:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62441 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <62441@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 62441-submit@debbugs.gnu.org id=B62441.167976639531163 (code B ref 62441); Sat, 25 Mar 2023 17:47:02 +0000 Received: (at 62441) by debbugs.gnu.org; 25 Mar 2023 17:46:35 +0000 Received: from localhost ([127.0.0.1]:43414 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yM-00086T-J2 for submit@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:34 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:37225) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yJ-00085v-W6 for 62441@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:33 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1679766385; x=1681580786; bh=z+2pVVbkTOsecXe SthtCODbPNu9Eh76iMSroX/+vGwE=; b=nCsSebPQSTta2dE/33T/97C/Bd92Wi3 UVYGFDrmN+Gycv9EVt2dXJA16EdoOZN+qwiOxTHqxQQ4iPvE7zgxcQcsB8V/DIUl ZPYN0ksNySTOBF8aASmRrHq0jF5ziVGMzwLSYSS3uG82E2gSHgM8zkrhpiMl0MyR eOTOhPfOGv5o= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id D274C160146 for <62441@debbugs.gnu.org>; Sat, 25 Mar 2023 18:46:25 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Sat, 25 Mar 2023 18:46:20 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sat, 25 Mar 2023 18:45:52 +0100 Message-ID: <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-AS-Result: No-10-3.720200-5.000000 X-TMASE-MatchedRID: cSoPLjBYd53/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEPVS VC7uYV8ESQyRa2QqiAppuUdAUcH4tSq+GZ9ZHxIhuW77/y896siFzNNPDc6umBHfiujuTbedW81 XJ6ySHxuh3Yuds1eHGzjNjyLdNN9rOK1YuUtHUz0GTYh4hC/Pnz7BhvpELLyoPQJysmL0UdP0JZ Q6Idg+snNSxh3pgBdGT+FAF+0qgOBaLxCKnrw2B90KiTeJteVBPn/9u4K/no6XBXaJoB9JZxRFJ Jyf5BJe3QfwsVk0Ubt2gyyw2xTBhcpFrnx+AnsCz/47lNYtiIdQ7zJ94zRCZiQbetkNUe3us20G sdpM4dHklfsSU3WAA/SoV1oYitNeW6SjnZ/N1gbyvhj+CjrKLsel4d1cuMtvjvdbOxcC5/MQtmu xiADqhvKHck16UKN1GR8AXHcOfjI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-3.720200-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-SNTS-SMTP: CED20F328DCBD0E8CD17B1148618C39D3435BA7AA806D6506718C78F34BD33FE2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-ctrialsgov): New variable. --- gnu/packages/cran.scm | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) base-commit: de84b24613afa4020f3f0553dad8e39a78d1f92c diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a36c845479..a3590fe9cd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -396,6 +396,43 @@ (define-public r-cplm comparison tool involving zero-inflated and highly skewed distributions.") (license license:gpl2+))) +(define-public r-ctrialsgov + (package + (name "r-ctrialsgov") + (version "0.2.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "ctrialsgov" version)) + (sha256 + (base32 "0hdh1fdfaja8amf7fkvk1c6yif703132bvacq0j9pk5jr97czgpw")))) + (properties `((upstream-name . "ctrialsgov"))) + (build-system r-build-system) + (propagated-inputs + (list r-dbi + r-dplyr + r-ggplot2 + r-htmlwidgets + r-lubridate + r-matrix + r-plotly + r-purrr + r-rlang + r-stringi + r-tibble)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=ctrialsgov") + (synopsis + "Query data from U.S. National Library of Medicine's Clinical trials database") + (description + "The ctrialsgov package implements a series of tools which create and query +database from the United States National Library of Medicine's Clinical trials +database @url{https://clinicaltrials.gov/}. Functions provide access a variety +of techniques for searching the data using range queries, categorical filtering, +and by searching for full-text keywords. Minimal graphical tools are also +provided for interactively exploring the constructed data.") + (license license:expat))) + (define-public r-curry (package (name "r-curry") From patchwork Sat Mar 25 17:45:53 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 48678 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id B20D016FC4; Sat, 25 Mar 2023 17:47:54 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 4B1A016D87 for ; Sat, 25 Mar 2023 17:47:54 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pg7yy-00051X-13; Sat, 25 Mar 2023 13:47:12 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pg7yp-0004zO-Iz for guix-patches@gnu.org; Sat, 25 Mar 2023 13:47:04 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pg7yp-0005ll-6V for guix-patches@gnu.org; Sat, 25 Mar 2023 13:47:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pg7yo-00087o-Tb; Sat, 25 Mar 2023 13:47:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#62441] [PATCH 2/4] gnu: Add r-jsonify. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Sat, 25 Mar 2023 17:47:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62441 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <62441@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 62441-submit@debbugs.gnu.org id=B62441.167976639531170 (code B ref 62441); Sat, 25 Mar 2023 17:47:02 +0000 Received: (at 62441) by debbugs.gnu.org; 25 Mar 2023 17:46:35 +0000 Received: from localhost ([127.0.0.1]:43416 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yM-00086a-Ux for submit@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:35 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:39143) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yJ-00085s-Vn for 62441@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:33 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1679766382; x=1681580783; bh=X+8he4ec1WoDn7/L6jFwUYXXUhWrXEDQRNBgQqxY+QE=; b=EbY83cA+aqOZ Nhhdwm3bTbQZxMuAbQ3yb5z/5+DMYOMYUL2v0hHPLKULoodK7Zhe66vE2iCCt6Wx xIO3CYQskf7LQfAqEnqbGHc8WJpQNp8nf9JIs9d+4r34JREKqKFiYwLD7dUsMWIJ Y2OS7WeTZY33yEbCh53GEm9S63Lg/jU= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 8A908160123 for <62441@debbugs.gnu.org>; Sat, 25 Mar 2023 18:46:21 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Sat, 25 Mar 2023 18:46:20 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sat, 25 Mar 2023 18:45:53 +0100 Message-ID: <20230325174555.837323-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 In-Reply-To: <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> References: <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-AS-Result: No-10--0.522400-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkECYq 7+inhWQ/EyNJQfCPniLuNT8xdcEnQwE+dA3RWUSvwLYk+NSxc5r4qCLIu0mtIP+aPQT1cxlGfEz RZ8UqjkrF+KCpGE37CJsoi2XrUn/J8m+hzBStantdY+ZoWiLIm8K21zBg2KlfiN2nYwbbDKyqmq Wbyu6hYl+pP1lZq/N/sa3iCh86emcfJz8enx6YV+U6slhm+UN3KK8f6gmnPYeGoA9d9F8KQmbQI itoEZFKOcI1HktvuUooQg4MrLBPLqN8mCVfMdDqzFFXNLNe3bF/6uEw9r+ytQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--0.522400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-SNTS-SMTP: 5F20A190C341346591CBC3DE369B9545A4A5F915305176964DB73B7AD2BE2B1D2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-jsonify): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a3590fe9cd..034dd0869a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3309,6 +3309,27 @@ (define-public r-jsonlite in systems and applications.") (license license:expat))) +(define-public r-jsonify + (package + (name "r-jsonify") + (version "1.2.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "jsonify" version)) + (sha256 + (base32 "0bxgyj5b1hnijq5315g050giixy4k5mjz2zdx8yil0igb5ifji9p")))) + (properties `((upstream-name . "jsonify"))) + (build-system r-build-system) + (propagated-inputs (list r-rapidjsonr r-rcpp)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=jsonify") + (synopsis "Convert between R objects and Javascript object notation (JSON)") + (description + "The jsonify package helps with the conversions between R objects and +@acronym{JSON, Javascript Object Notation} using the rapidjsonr library.") + (license license:expat))) + (define-public r-servr (package (name "r-servr") From patchwork Sat Mar 25 17:45:54 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 48680 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 4A29516FC4; Sat, 25 Mar 2023 17:48:05 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id E33B916D87 for ; Sat, 25 Mar 2023 17:48:04 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pg7yy-00053V-Ra; Sat, 25 Mar 2023 13:47:12 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pg7yp-0004zM-Hd for guix-patches@gnu.org; Sat, 25 Mar 2023 13:47:04 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pg7yo-0005lV-9R for guix-patches@gnu.org; Sat, 25 Mar 2023 13:47:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pg7yn-00087X-WC; Sat, 25 Mar 2023 13:47:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#62441] [PATCH 3/4] gnu: Add r-nodbi. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Sat, 25 Mar 2023 17:47:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62441 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <62441@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 62441-submit@debbugs.gnu.org id=B62441.167976639431156 (code B ref 62441); Sat, 25 Mar 2023 17:47:01 +0000 Received: (at 62441) by debbugs.gnu.org; 25 Mar 2023 17:46:34 +0000 Received: from localhost ([127.0.0.1]:43412 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yM-00086R-8V for submit@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:34 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:58607) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yJ-00085t-Vl for 62441@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:32 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1679766385; x=1681580786; bh=WO4kw8qrhmmBu3nYABuRIWY3EnTJvOFeSyE/BLJgUFk=; b=M9TjCSGPyCal ov+mLYtGsJ7mMrKN58Yuk1o0VZOGhaBeZknfg9j4IUzzE55Ybyu/sJrmYFugrIfW 2b7sBs3KIgP42XEEtK3P+0SP2Hv/Nhcc3wK+xQtyCX2e2sFz4uyCZ5gbYFVs+T8G 6Yswh9oi3wBDRZWc7g/oj5GtL7EC5x4= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 584CC16013D for <62441@debbugs.gnu.org>; Sat, 25 Mar 2023 18:46:25 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Sat, 25 Mar 2023 18:46:20 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sat, 25 Mar 2023 18:45:54 +0100 Message-ID: <20230325174555.837323-3-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 In-Reply-To: <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> References: <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-AS-Result: No-10--1.218400-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEIjG wx10ej9iRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v8XjfR3d0weRkYUijfAB7a8HnC x8pl2QgPF+KCpGE37CJsoi2XrUn/J8m+hzBStantdY+ZoWiLIm8K21zBg2KlfvG0VHndRxgK7Xz KmET21JVlmSDxgemot8Se9nsXMOZNid6+d1Mql0QnY0KdMvY12bgEcGa+zYvj0bIt8L7gTDLeIe vCibKdLs8+hzf3O9mUoQg4MrLBPLqN8mCVfMdDqzFFXNLNe3bF/6uEw9r+ytQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.218400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-SNTS-SMTP: 82B40C74893E83B75E25C6EEA3B067CA8FDCE429F8C838FD736C47E0FA01F5ED2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-nodbi): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 034dd0869a..9b314bae43 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -12275,6 +12275,33 @@ (define-public r-sjmisc tidyverse workflow.") (license license:gpl3))) +(define-public r-nodbi + (package + (name "r-nodbi") + (version "0.9.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "nodbi" version)) + (sha256 + (base32 "1hn0wy2ry9l3wwqrshmf82cxigkm16wycwprv458bcvb5k6ayy5m")))) + (properties `((upstream-name . "nodbi"))) + (build-system r-build-system) + (propagated-inputs + (list r-dbi + r-jqr + r-jsonify + r-jsonlite + r-stringi + r-uuid)) + (home-page "https://docs.ropensci.org/nodbi/") + (synopsis "NoSQL database connector") + (description + "The nodbi package aims to simplified document database access and +manipulation, by providing a common API across supported NoSQL databases +Elasticsearch, CouchDB, MongoDB as well as SQLite/JSON1, PostgreSQL, and DuckDB.") + (license license:expat))) + (define-public r-nortest (package (name "r-nortest") From patchwork Sat Mar 25 17:45:55 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 48679 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 9E63F16FE7; Sat, 25 Mar 2023 17:48:01 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 9601616D87 for ; Sat, 25 Mar 2023 17:48:00 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pg7yy-00051Z-46; Sat, 25 Mar 2023 13:47:12 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pg7yq-0004zR-Me for guix-patches@gnu.org; Sat, 25 Mar 2023 13:47:05 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pg7yq-0005nn-E1 for guix-patches@gnu.org; Sat, 25 Mar 2023 13:47:04 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pg7yp-00087y-9i; Sat, 25 Mar 2023 13:47:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#62441] [PATCH 4/4] gnu: Add r-ctrdata. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Sat, 25 Mar 2023 17:47:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62441 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <62441@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 62441-submit@debbugs.gnu.org id=B62441.167976640431189 (code B ref 62441); Sat, 25 Mar 2023 17:47:03 +0000 Received: (at 62441) by debbugs.gnu.org; 25 Mar 2023 17:46:44 +0000 Received: from localhost ([127.0.0.1]:43418 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yW-00086z-9m for submit@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:44 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:59757) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yK-00085w-HV for 62441@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:33 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1679766386; x=1681580787; bh=lKxij0GKexrq5jyvTIGWeispF7hGWuEkJgEAzGd2WOk=; b=BoncWdrbkmtp BL6+OJQrvmCZ3GOuhGIIqLQvGq0klDCLbV2F4NbM0PzgpTlnZTN5jXqgRBnG1CfW wk580k35R0+yOb/0dtWYv0MEMnXxwfZ6JXWItq0ItdKCfR1m/8m9IEke0k5Yd+wb /LbMHfhZZNd2YFIssPNi92M/c9sKJIA= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 9BB3C16014E for <62441@debbugs.gnu.org>; Sat, 25 Mar 2023 18:46:26 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Sat, 25 Mar 2023 18:46:21 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sat, 25 Mar 2023 18:45:55 +0100 Message-ID: <20230325174555.837323-4-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 In-Reply-To: <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> References: <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-AS-Result: No-10-3.500300-5.000000 X-TMASE-MatchedRID: ZAkTtSyZ7B7/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEPVS VC7uYV8ESQyRa2QqiAppuUdAUcH4tSq+GZ9ZHxIhuW77/y896siFzNNPDc6umBHfiujuTbedBO6 2kWcWGBhu4z/YYEdR45bpyCR4N2Viq2NInS93zS9oMLOoNHsM9rLZpUHs8KMVpz4V9BzQ0RpwuO Ip1++GNwWy+slqkucq38BVk5/okjyLBhscdVmCC4FhphRl/QgVN5dqZcIK7VgCHZkKE/8Uqp6ba /D5x6cp4vM1YF6AJbbY2hczJbMEQgtuKBGekqUpOlxBO2IcOBYFPVJaadF6GoKXCgPaz4KMCxLZ 5MCYylxqJ3jSe0KrrSQTUdsZa70Jjxkh99Y595kohu0bpV5Ex0MP4oSvXW48/gL0Zxhzykd+3Bn dfXUhXQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-3.500300-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-SNTS-SMTP: 3A90914720C714FACA7E7756E67FA6AB47DD8D5AC4456D49C027E0B764512CCD2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-ctrdata): New variable. --- gnu/packages/cran.scm | 46 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 46 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9b314bae43..6e70dd134a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -97,6 +97,7 @@ (define-module (gnu packages cran) #:use-module (gnu packages pcre) #:use-module (gnu packages pdf) #:use-module (gnu packages perl) + #:use-module (gnu packages php) #:use-module (gnu packages pkg-config) #:use-module (gnu packages pulseaudio) ;libsndfile #:use-module (gnu packages protobuf) @@ -396,6 +397,51 @@ (define-public r-cplm comparison tool involving zero-inflated and highly skewed distributions.") (license license:gpl2+))) +(define-public r-ctrdata + (package + (name "r-ctrdata") + (version "1.11.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ctrdata" version)) + (sha256 + (base32 "076v3bll8s6m61wcbwgrgrm34g0wa7gsc90mbwxwap1xfxyzjjsg")))) + (properties `((upstream-name . "ctrdata"))) + (build-system r-build-system) + (inputs + (list coreutils + perl + php + sed)) + (propagated-inputs + (list r-clipr + r-curl + r-dplyr + r-httr + r-jsonlite + r-lubridate + r-nodbi + r-rvest + r-stringi + r-xml2)) + (native-inputs (list r-r-rsp)) + (home-page "https://cran.r-project.org/package=ctrdata") + (synopsis "Retrieve and analyze clinical trials in public registers") + (description + "This package provides a system for querying, retrieving and analyzing +protocol- and results-related information on clinical trials from three public +registers, the @acronym{EUCTR, European Union Clinical Trials Register} @url{ +https://www.clinicaltrialsregister.eu/}, @acronym{CTGOV, ClinicalTrials.gov} +@url{https://clinicaltrials.gov/} and the @acronym{ISRCTN, International Clinical +Trials Registry Platform} @url{https://www.isrctn.com/}. Trial information is +downloaded, converted and stored in a database. Functions are included to +identify deduplicated records, to easily find and extract variables (fields) of +interest even from complex nesting as used by the registers, and to update +previous queries. The package can be used for meta-analysis and trend-analysis +of the design and conduct as well as for results of clinical trials.") + (license license:expat))) + (define-public r-ctrialsgov (package (name "r-ctrialsgov")