From patchwork Mon Mar 20 16:00:01 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 48216 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id DCA6B16F2D; Mon, 20 Mar 2023 16:01:14 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id E450D16C35 for ; Mon, 20 Mar 2023 16:01:13 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1peHwY-0000Pc-5W; Mon, 20 Mar 2023 12:01:06 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1peHwV-0000Ns-IH for guix-patches@gnu.org; Mon, 20 Mar 2023 12:01:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1peHwV-0008TN-7A for guix-patches@gnu.org; Mon, 20 Mar 2023 12:01:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1peHwV-0001BK-2b; Mon, 20 Mar 2023 12:01:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#62297] [PATCH 1/5] gnu: Add r-affyilm. References: In-Reply-To: Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 20 Mar 2023 16:01:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62297 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <62297@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 62297-submit@debbugs.gnu.org id=B62297.16793280284446 (code B ref 62297); Mon, 20 Mar 2023 16:01:03 +0000 Received: (at 62297) by debbugs.gnu.org; 20 Mar 2023 16:00:28 +0000 Received: from localhost ([127.0.0.1]:55546 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1peHvw-00019Z-HE for submit@debbugs.gnu.org; Mon, 20 Mar 2023 12:00:28 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:50525) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1peHvu-00018v-90 for 62297@debbugs.gnu.org; Mon, 20 Mar 2023 12:00:26 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1679328020; x=1681142421; bh=r5bgxyB7XQZ7IFr BeU1FCkp1KbamVKPH+pSiwlIXjV4=; b=MgUheFBOXUHSJ9lVs1x+5s5TP3hFRfI HNr240amA12ogvqmnf9V8ZnlFP3nC656vpQa9EEwvPMxR7nfmukhr2P1E9gcX8dr nS8xyBOCee3zLgB/EVuSH9z0i0M9UHBR21Y/iQf2A58OhNiva/y5xgpJLSTxGfwS P7uxJgx5y1mg= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 42C3EA0150 for <62297@debbugs.gnu.org>; Mon, 20 Mar 2023 17:00:20 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 20 Mar 2023 17:00:17 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 20 Mar 2023 17:00:01 +0100 Message-ID: <20230320160005.1594550-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27516.000 X-TM-AS-Result: No-10--3.991400-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCzGrCYQ4FUp6uuLH9BII+4qrKs axUiN/ynjtXFLFuP+NRJTjjs9yT6Yo8WMkQWv6iV3LAytsQR4e42j49Ftap9Eymsk/wUE4hrwMU UgHNDhDZRZAxu6UZJfx24cBmlgjfWGFTeUK36dNoU78lfzbRjdrv7CKoXvmm24fOs3ThkCUmKkn t7Gh8IHUCLIDC8rg/m/Az22SnGT74F2k07Nujv5x6Xh3Vy4y2+O91s7FwLn8xC2a7GIAOqG8ody TXpQo3UZHwBcdw5+Mg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.991400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27516.000 X-TM-SNTS-SMTP: 4C18A848A5FE8690C31ABFAC0AEB6C30AE518722B09DFD57BECB0F1661FEAECD2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-affyilm): New variable. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) base-commit: 1f36534c7e8f2325bff4df5d37ecc811dc63fc38 diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e54c9ccf2b..48aa426574 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2098,6 +2098,32 @@ (define-public r-affixcan expression values are known.") (license license:gpl3))) +(define-public r-affyilm + (package + (name "r-affyilm") + (version "1.50.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "affyILM" version)) + (sha256 + (base32 "0i2hjaqjz06ym5kbw5da1h3cahc630mjwljsji1l2ks0gjcipll0")))) + (properties `((upstream-name . "affyILM"))) + (build-system r-build-system) + (propagated-inputs + (list r-affxparser + r-affy + r-biobase + r-gcrma)) + (home-page "https://bioconductor.org/packages/affyILM") + (synopsis "Linear model of background subtraction and the Langmuir isotherm") + (description + "The affyILM package is a preprocessing tool which estimates gene expression +levels for Affymetrix Gene Chips. Input from physical chemistry is employed to +first background subtract intensities before calculating concentrations on behal +of the Langmuir model.") + (license license:gpl3))) + (define-public r-affyrnadegradation (package (name "r-affyrnadegradation") From patchwork Mon Mar 20 16:00:02 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 48218 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 6992116F2D; Mon, 20 Mar 2023 16:02:56 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 5FD2616C35 for ; Mon, 20 Mar 2023 16:02:55 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1peHwX-0000P7-Km; Mon, 20 Mar 2023 12:01:05 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1peHwV-0000NZ-2y for guix-patches@gnu.org; Mon, 20 Mar 2023 12:01:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1peHwU-0008T7-PN for guix-patches@gnu.org; Mon, 20 Mar 2023 12:01:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1peHwU-0001B4-6W; Mon, 20 Mar 2023 12:01:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#62297] [PATCH 2/5] gnu: Add r-affyplm. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 20 Mar 2023 16:01:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62297 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <62297@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 62297-submit@debbugs.gnu.org id=B62297.16793280284432 (code B ref 62297); Mon, 20 Mar 2023 16:01:02 +0000 Received: (at 62297) by debbugs.gnu.org; 20 Mar 2023 16:00:28 +0000 Received: from localhost ([127.0.0.1]:55542 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1peHvv-00019O-Fx for submit@debbugs.gnu.org; Mon, 20 Mar 2023 12:00:27 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:55303) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1peHvt-00018q-U8 for 62297@debbugs.gnu.org; Mon, 20 Mar 2023 12:00:26 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1679328019; x=1681142420; bh=byZawNaZErWhUcvMYenKDPkwetRHNsp5OZSrs4xfiXM=; b=Qmf2Ijt7oM8T jyRZ6PNhmh6xC1Cr+O8K4poxPs6VgVVZ2bYkd9AkRuEcHTW0UecJckbDQuQ56XQX o3rZgBeVUwCGjq55ek3ZdMKCSshEGtTTbCS0yulatjgJT2dFYC2VKeFQVJJ4pnpC QBesymtV9+TogzIzJUqUbk/cEFcbxfA= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 05D9BA0146 for <62297@debbugs.gnu.org>; Mon, 20 Mar 2023 17:00:18 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 20 Mar 2023 17:00:18 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 20 Mar 2023 17:00:02 +0100 Message-ID: <20230320160005.1594550-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 In-Reply-To: <20230320160005.1594550-1-madalinionel.patrascu@mdc-berlin.de> References: <20230320160005.1594550-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27516.000 X-TM-AS-Result: No-10--4.207000-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH62ymWcHNzzEyhHrZE2+S866Y5ZGw7wyeHJEg +DBUO6yjoHJXXUux0hvnBHIae9yeQ9TM9XMXKKCjZJrfdkZdZ1gseQVcTRnF2lwV2iaAfSWcURS Scn+QSXt0H8LFZNFG7doMssNsUwYX5FAOqBWlgAaJp07+bTIJSKWRskiJdkchrq3Z/0HMnlczIO pSvCVz3p9W8uCbtNk2dQFRMnBouWQfgWZ6qEqfByNNHR0vj4CLHpeHdXLjLb473WzsXAufzELZr sYgA6obyh3JNelCjdRkfAFx3Dn4y X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.207000-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27516.000 X-TM-SNTS-SMTP: 44A73BDC74AC93BC5ECAC9809825D82670A85E1525D5D2F16ED3B50C6E74326C2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-affyplm): New variable. --- gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 48aa426574..1e3753b2ec 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2124,6 +2124,36 @@ (define-public r-affyilm of the Langmuir model.") (license license:gpl3))) +(define-public r-affyplm + (package + (name "r-affyplm") + (version "1.74.2") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "affyPLM" version)) + (sha256 + (base32 "0f0faxjzlg0znhjfvf1490yc54npkx659jx76cddm5hk7q0blv3v")))) + (properties `((upstream-name . "affyPLM"))) + (build-system r-build-system) + (inputs (list zlib)) + (propagated-inputs + (list r-affy + r-biobase + r-biocgenerics + r-gcrma + r-preprocesscore + r-zlibbioc)) + (home-page "https://github.com/bmbolstad/affyPLM") + (synopsis "Methods for fitting probe-level models") + (description + "The affyPLM provides a package that extends and improves the functionality +of the base affy package. For speeding up the runs, it includes routines that make +heavy use of compiled code. The central focus is on implementation of methods for +fitting probe-level models and tools using these models. @acronym{PLM, Product +Lifecycle Management} based quality assessment tools are also provided.") + (license license:gpl2+))) + (define-public r-affyrnadegradation (package (name "r-affyrnadegradation") From patchwork Mon Mar 20 16:00:03 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 48217 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 7CA0F16F2D; Mon, 20 Mar 2023 16:02:28 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 43CBC16C35 for ; Mon, 20 Mar 2023 16:02:27 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1peHwY-0000Pt-Ix; Mon, 20 Mar 2023 12:01:06 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1peHwV-0000O2-Uz for guix-patches@gnu.org; Mon, 20 Mar 2023 12:01:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1peHwV-0008TZ-LB for guix-patches@gnu.org; Mon, 20 Mar 2023 12:01:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1peHwV-0001BT-Ga; Mon, 20 Mar 2023 12:01:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#62297] [PATCH 3/5] gnu: Add r-tkrplot. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 20 Mar 2023 16:01:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62297 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <62297@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 62297-submit@debbugs.gnu.org id=B62297.16793280364473 (code B ref 62297); Mon, 20 Mar 2023 16:01:03 +0000 Received: (at 62297) by debbugs.gnu.org; 20 Mar 2023 16:00:36 +0000 Received: from localhost ([127.0.0.1]:55550 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1peHw3-0001A4-Sn for submit@debbugs.gnu.org; Mon, 20 Mar 2023 12:00:36 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:54131) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1peHvw-000190-TY for 62297@debbugs.gnu.org; Mon, 20 Mar 2023 12:00:29 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1679328022; x=1681142423; bh=e06UsSmeacjFSIbMerizzzGsGmY5MVv6c9ZXM04nrqc=; b=m4V+DYp/wwWp EMQv0gaKkx+gY7r0dmZsGdjt5R6hNhBCnwO5LZYJvHZFBFoA2zPu4ZhxXUJtInye ADhYmVofGwcyzWq3ZTHQC11JKvmo8gSll2s71o427DSicI04zrPQ2kLBbsyl/XVO h5OSxPIWxZUErkUn1+O4Hy8J7eu+4c4= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 55E07160167 for <62297@debbugs.gnu.org>; Mon, 20 Mar 2023 17:00:22 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 20 Mar 2023 17:00:18 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 20 Mar 2023 17:00:03 +0100 Message-ID: <20230320160005.1594550-3-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 In-Reply-To: <20230320160005.1594550-1-madalinionel.patrascu@mdc-berlin.de> References: <20230320160005.1594550-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27516.000 X-TM-AS-Result: No-10-3.307900-5.000000 X-TMASE-MatchedRID: SzbEz7SZt2v/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6031Nfxfj2zMXjfR3d0weRjQQTVweW/TM0aU Ngwfxxm4irGJSljGIWO6cJQJ6BHCwv/kvhLshlRMapIb9znReA5ZBsmDtT9d+U72YOAMDJjieAi CmPx4NwGmRqNBHmBveVDC1CbuJXmMqtq5d3cxkNRqXnrxrKCOX8OOeLGiqRBHp2bg0ftNafp+zz 4pLvo6umNQ1RVNksVPlW0EW5lez3SzBA2cZI0sSkTOQbfFXLwSOWwfmPn9ZoZ5kLvCS/NRoDUEk BTZ8vOLxlyTCXQR4xioA5PA4dQuxuYpJR2kheXd+3BndfXUhXQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-3.307900-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27516.000 X-TM-SNTS-SMTP: 9E7A220F61E0B3B393111BB4E713E12733B3183015E8170A7C70831378C18F5B2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-tkrplot): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 39e692fc6c..909943fdcc 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2818,6 +2818,30 @@ (define-public r-tidyverse single step.") (license license:gpl3))) +(define-public r-tkrplot + (package + (name "r-tkrplot") + (version "0.0-27") + (source + (origin + (method url-fetch) + (uri (cran-uri "tkrplot" version)) + (sha256 + (base32 "19bj4wn1fs4wrx5k4gakhpz4q59fgx0584wyaw7hnh0ljj8i34n9")))) + (properties `((upstream-name . "tkrplot"))) + (build-system r-build-system) + (inputs (list libx11)) + (home-page "https://cran.r-project.org/package=tkrplot") + (synopsis "Simple mechanism for placing R graphics in a Tk widget") + (description + "The tkrplot package creates and returns a @dfn{Tk, cross-platform graphical +user interface toolkit} label widget containing a Tk image of type Rplot. The plot +is created by calling fun with a special device used create the image. The function +@code{tkrreplot} calls fun to place a new plot in the Rplot widget lab. @code{ +tkpersp} is called like @code{persp} but produces a plot in which some of the +parameters of persp are controlled graphically.") + (license (list license:gpl2+ license:gpl3+)))) ;; expanded from GPL + (define-public r-rvest (package (name "r-rvest") From patchwork Mon Mar 20 16:00:04 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 48215 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 779E016F2D; Mon, 20 Mar 2023 16:01:13 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id A809116C35 for ; Mon, 20 Mar 2023 16:01:12 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1peHwY-0000Pi-DF; Mon, 20 Mar 2023 12:01:06 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1peHwW-0000OZ-Bn for guix-patches@gnu.org; Mon, 20 Mar 2023 12:01:04 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1peHwW-0008Tg-1Q for guix-patches@gnu.org; Mon, 20 Mar 2023 12:01:04 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1peHwV-0001Bb-T3; Mon, 20 Mar 2023 12:01:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#62297] [PATCH 4/5] gnu: Add r-affylmgui. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 20 Mar 2023 16:01:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62297 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <62297@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 62297-submit@debbugs.gnu.org id=B62297.16793280364480 (code B ref 62297); Mon, 20 Mar 2023 16:01:03 +0000 Received: (at 62297) by debbugs.gnu.org; 20 Mar 2023 16:00:36 +0000 Received: from localhost ([127.0.0.1]:55552 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1peHw4-0001A6-Ax for submit@debbugs.gnu.org; Mon, 20 Mar 2023 12:00:36 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:35349) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1peHvx-000191-8L for 62297@debbugs.gnu.org; Mon, 20 Mar 2023 12:00:29 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1679328023; x=1681142424; bh=u5VjKAG0upoi4ciZ1U1p2wqucnNngDXXTH+ukMSyywI=; b=NOSx5gWWepI7 I8EO5Lmxf1fBDJhdVpPLtdkP3S2tvtfVOsA3yZ5+LuZoJt2zgfrTx5w+UFq7ATyy NbRG2lRersdVY+22UHLpuPdtswF+PyCLrRdZbvi/hPts5OeCCH53yPHYXhHV5Z/h qiPAIGgDjg9hyr+QNC0R8hz1eMle6KU= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 0519E160169 for <62297@debbugs.gnu.org>; Mon, 20 Mar 2023 17:00:23 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 20 Mar 2023 17:00:18 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 20 Mar 2023 17:00:04 +0100 Message-ID: <20230320160005.1594550-4-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 In-Reply-To: <20230320160005.1594550-1-madalinionel.patrascu@mdc-berlin.de> References: <20230320160005.1594550-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27516.000 X-TM-AS-Result: No-10--4.012200-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90Badv+F8ucSI194/5X9VfCxSHjB5Y+o5ZPcZ6rUTj2OGmA0 yITMNzjl9LQinZ4QefCP/VFuTOXUTEKa2f+1p7r3kwjHXXC/4I8prJP8FBOIaGYxVZA32xOEIS/ sBf9DoXESHEvH6t5okTLFeB2wyz6k8bwEnk9llPWgG414mT8YABV1Rz7+yfWcbxhjPyP3i0YX9a KYW3bwsABCI1SMHw7y051Z79ST++7Bk72SZpZa8/z4Ty9JAKR/JI5vnpRHGyA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.012200-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27516.000 X-TM-SNTS-SMTP: 638C72B30B8C20A526CBEFEC57509D66A917B2AD8AEEFDDBB907B633D178BCBF2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-affylmgui): New variable. --- gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e3753b2ec..78ce740c2c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2124,6 +2124,37 @@ (define-public r-affyilm of the Langmuir model.") (license license:gpl3))) +(define-public r-affylmgui + (package + (name "r-affylmgui") + (version "1.72.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "affylmGUI" version)) + (sha256 + (base32 "0jds73pxqf522wcg8qd4b4k1qbhn51av5md1nhgcdnb6is0lzvxi")))) + (properties `((upstream-name . "affylmGUI"))) + (build-system r-build-system) + (propagated-inputs + (list r-affy + r-affyio + r-affyplm + r-annotationdbi + r-biocgenerics + r-biocmanager + r-gcrma + r-limma + r-r2html + r-tkrplot + r-xtable)) + (home-page "http://bioinf.wehi.edu.au/affylmGUI/") + (synopsis "GUI for limma package with Affymetrix microarrays") + (description + "This package provides a @acronym{GUI, Graphical User Interface} for analysis +of Affymetrix microarray gene expression data using the affy and limma packages.") + (license license:gpl2+))) + (define-public r-affyplm (package (name "r-affyplm") From patchwork Mon Mar 20 16:00:05 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 48219 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 369D416F2D; Mon, 20 Mar 2023 16:04:04 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 9095316C35 for ; Mon, 20 Mar 2023 16:04:03 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1peHwX-0000PX-US; Mon, 20 Mar 2023 12:01:05 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1peHwV-0000Na-3I for guix-patches@gnu.org; Mon, 20 Mar 2023 12:01:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1peHwU-0008TA-QJ for guix-patches@gnu.org; Mon, 20 Mar 2023 12:01:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1peHwU-0001BC-Kv; Mon, 20 Mar 2023 12:01:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#62297] [PATCH 5/5] gnu: Add r-annotationhubdata. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 20 Mar 2023 16:01:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62297 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <62297@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 62297-submit@debbugs.gnu.org id=B62297.16793280284439 (code B ref 62297); Mon, 20 Mar 2023 16:01:02 +0000 Received: (at 62297) by debbugs.gnu.org; 20 Mar 2023 16:00:28 +0000 Received: from localhost ([127.0.0.1]:55544 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1peHvw-00019R-1H for submit@debbugs.gnu.org; Mon, 20 Mar 2023 12:00:28 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:52479) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1peHvt-00018r-UA for 62297@debbugs.gnu.org; Mon, 20 Mar 2023 12:00:26 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1679328019; x=1681142420; bh=jH63PiQiMbHypCdwhMTxd6j7SbjviaIPW/hK8XBj/wg=; b=gGIP9FrhQd9n rI16czFgM3nfNHfeoaiJSGgrD38x57WNsCaMoVxu9B6PvQw8+cr0+p3TQK5BFhix dYNzoja61SAtnI2k1oZljL4lFd1X7pGg0YRIdQsUbaLm3cP3WMeEIv/jnnaDcr0I n3/ydVYCn/IOgXS4WW57lw6raHzE/nE= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id CC0E7A014A for <62297@debbugs.gnu.org>; Mon, 20 Mar 2023 17:00:19 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 20 Mar 2023 17:00:18 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 20 Mar 2023 17:00:05 +0100 Message-ID: <20230320160005.1594550-5-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 In-Reply-To: <20230320160005.1594550-1-madalinionel.patrascu@mdc-berlin.de> References: <20230320160005.1594550-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27516.000 X-TM-AS-Result: No-10--5.484200-5.000000 X-TMASE-MatchedRID: 2wfub8HDRfP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEENK xNfKw7SiRRa406V/YwyBUGewL2YXt0fr6WG4Th9aDDzmS9l9fYoXivwflisSrNWM2x6EZ/S97Sc dpy2ZKwJOM4h+YsvDLlPSAWHDBcnd/2fkqsLULy4APmNKDWsW0JobBmSkKst1Ipz++XQI8PGeAi CmPx4NwBnUJ0Ek6yhjxEHRux+uk8hfNjF5BHUO+xAP38E9e8ZMtOETm+G1DiFM4bjy4WN0/32dn ZE+UfYT0Fw07uQGltQ= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.484200-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27516.000 X-TM-SNTS-SMTP: 26A051E8CFB21774DDF2DAFDF62FEB4F9FC038B5B427FE58796C2BA0F67371732002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-annotationhubdata): New variable. --- gnu/packages/bioconductor.scm | 53 +++++++++++++++++++++++++++++++++++ 1 file changed, 53 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 78ce740c2c..8ebdcc3706 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2704,6 +2704,59 @@ (define-public r-animalcules to understand their data better and discover new insights.") (license license:artistic2.0))) +(define-public r-annotationhubdata + (package + (name "r-annotationhubdata") + (version "1.28.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "AnnotationHubData" version)) + (sha256 + (base32 "0mcx09kcxccw2gkf4c3w7sxgb7v3gwbvahvx9wgq8f93q85yzg95")))) + (properties `((upstream-name . "AnnotationHubData"))) + (build-system r-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'install 'change-home-dir + (lambda _ + ;; Change from /homeless-shelter to /tmp for write permission. + (setenv "HOME" "/tmp")))))) + (propagated-inputs + (list r-annotationdbi + r-annotationforge + r-annotationhub + r-biobase + r-bioccheck + r-biocgenerics + r-biocmanager + r-biocviews + r-biostrings + r-dbi + r-futile-logger + r-genomeinfodb + r-genomicfeatures + r-genomicranges + r-graph + r-iranges + r-jsonlite + r-organismdbi + r-rcurl + r-rsamtools + r-rsqlite + r-rtracklayer + r-s4vectors + r-xml)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/AnnotationHubData") + (synopsis "Transform public data resources into Bioconductor data structures") + (description + "These recipes convert a wide variety and a growing number of public bioinformatic +data sets into easily-used standard Bioconductor data structures.") + (license license:artistic2.0))) + (define-public r-anvil (package (name "r-anvil")