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(license license:boost1.0))) +(define-public clipper2 + (package + (inherit clipper) + (name "clipper2") + (version "1.5.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/AngusJohnson/Clipper2") + (commit (string-append "Clipper2_" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1w8cmx712k45cb8gh9dakmbmybiwdx8c0b45mwpcldywx2lwxi2j")) + (modules '((guix build utils))) + (snippet #~(for-each + delete-file-recursively + '("CSharp" "DLL" "Delphi"))))) + (build-system cmake-build-system) + (arguments + (list + #:configure-flags + #~(list "-DUSE_EXTERNAL_GTEST=ON" + "-DCLIPPER2_EXAMPLES=OFF") + #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'chdir + (lambda _ + (chdir "CPP")))))) + (native-inputs (list googletest)) + (home-page "https://github.com/AngusJohnson/Clipper2") + (description + (string-append (package-description clipper) "\ +Note: This package is a major update of the original clipper library.")))) + (define-public pcg-cpp (let ((commit "ffd522e7188bef30a00c74dc7eb9de5faff90092") (revision "2")) From patchwork Fri Apr 4 19:16:34 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 41275 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 6A52627BBEB; Fri, 4 Apr 2025 20:18:41 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 27FBE27BBE2 for ; Fri, 4 Apr 2025 20:18:41 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1u0mYN-0006eu-2A; Fri, 04 Apr 2025 15:18:11 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1u0mYI-0006bO-Ky for guix-patches@gnu.org; Fri, 04 Apr 2025 15:18:06 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1u0mYH-0007o5-31 for guix-patches@gnu.org; Fri, 04 Apr 2025 15:18:05 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=um7mAO6RWwOmElmn4ukPN8wWm+DJbkJ2Bm0uVlsr92Q=; b=LDZ7+DBmmIY37ofOTY7g4cmTew+lARCRz0YKmGusDwoON/SKnY7tw+YnXQ5LvJbMTJKqXhBoSJSH8RtVZt1cSExgpOF1HDZaju06+zmKsj/GdyGP2GWvRokRl14bvYsCQjcca0ep6+pVVTxgi38mPc1WGstFNZTl+ZcKgrnzbHha9k/QZM+9wNAw2wEccVf64FqwhD21mfakOXgL90ZFiCAUZCOm+qyVBjDlWiXM3DDUnDIrHfSYDMLlq2le7ugcrCKeU+a9Yo+b2cuI1fu46VQ8jvZhiHe70PtRFRE8dfdPk6Gj1Tex9Z1+NDPeMmsRsBeRTF14JcxYSuFYOH5byw==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1u0mYF-0007KS-Oa for guix-patches@gnu.org; Fri, 04 Apr 2025 15:18:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#77541] [PATCH 02/38] gnu: labelme: Add missing native-inputs. 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These refuse to be run on CPU and really want a GPU " and not test_add_random_walk_pe" " and not test_asap" - " and not test_two_hop")) + " and not test_two_hop" + ;; Failed when switched to python@3.11 + ;; typing module internals + " and not test_type_repr")) #:phases '(modify-phases %standard-phases (add-after 'unpack 'delete-top-level-directories From patchwork Fri Apr 4 19:16:42 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 41282 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id E6C9B27BBE9; Fri, 4 Apr 2025 20:19:07 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id EFBB327BBE2 for ; 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tests? #false) - #false))))) - (define-public python-pooch (package (name "python-pooch") From patchwork Fri Apr 4 19:16:43 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 41278 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 4275027BBEA; Fri, 4 Apr 2025 20:18:50 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 713BA27BBE2 for ; Fri, 4 Apr 2025 20:18:49 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1u0mYP-0006iH-AC; Fri, 04 Apr 2025 15:18:14 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1u0mYL-0006ch-0c for guix-patches@gnu.org; Fri, 04 Apr 2025 15:18:09 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1u0mYK-0007p4-MA for guix-patches@gnu.org; Fri, 04 Apr 2025 15:18:08 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=Bt14lIzipCMSo+u1yb6zqxKsjqnovthSam03fUgNxsw=; b=b5bF/cvdrgesYY7v5eDo/GrTwG8QXz4uHqceVcwelMjKj786E1Ej6WHtTEP2Z6ewCh1SnoxnIlMUpKGOflfrXEVL5uGgcXoonQlGgmHvKu5HoeSahd0m+d+QTvUKazTo0SN8JxW4nSY4WTkPjSCJzQL1EZNYHF8h2/XSghTWURWPqwaXoluy1ccnaHcobbvkWYOfrHydwrC0cyeZGmGY1DFuVPvh19sD9k/qod+ail/0tFBnVvKAp2neuuhNyQOc2vue83fkysD3DxZOjeGr3W9Oduov4n6nTc0NO6opg1K5QwpYhDBOvxcElhwtKv1KJAqARK31+871AQZKCNdagw==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1u0mYK-0007La-6Y for guix-patches@gnu.org; Fri, 04 Apr 2025 15:18:08 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#77541] [PATCH 11/38] gnu: python-property-cached: Fix build. 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b=lm6mKdbs2/uuwzWb1QOTjqsaVmBblGuAU+9UqTLihBLpU6SruO2IfzlSwLKB9Y8nwrFqPRsv SQF156RuR79ZgBCCMlUwr293KxFhD6+FFT3f8jDnstU4HIavDE2p/zerVJWcV7v0PrGvvVSqdnk mjOYpFCYtNXpFCZDmCNAlf9NMJVkhlo9bGcnhDDhUaZzVMaQz2I7+o6119r8/9lt0B/e1NoACkw gVOoz2/FKu3fPjff9dLG/qyiimvLstQ4FXu2cCJ2CLtBGv0fxK3v8nL6M6gySFTvTrEWEqFI1gd 9DiRB5PK3Pf0Y7v3jO6t7W5o57qNmG112UN6s9d5fXrpg== X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-to: Nicolas Graves X-ACL-Warn: , Nicolas Graves via Guix-patches X-Patchwork-Original-From: Nicolas Graves via Guix-patches via From: Nicolas Graves Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-xyz.scm (python-property-cached): Fix build. * gnu/packages/patches/python-property-cached-asyncio-3_11.patch: Add patch. * gnu/local.mk: Record patch. --- gnu/local.mk | 1 + .../python-property-cached-asyncio-3_11.patch | 201 ++++++++++++++++++ gnu/packages/python-xyz.scm | 4 +- 3 files changed, 205 insertions(+), 1 deletion(-) create mode 100644 gnu/packages/patches/python-property-cached-asyncio-3_11.patch diff --git a/gnu/local.mk b/gnu/local.mk index 93f346481d..1bf8f8deba 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -2129,6 +2129,7 @@ dist_patch_DATA = \ %D%/packages/patches/python-memcached-syntax-warnings.patch \ %D%/packages/patches/python-mox3-python3.6-compat.patch \ %D%/packages/patches/python-packaging-test-arch.patch \ + %D%/packages/patches/python-property-cached-asyncio-3_11.patch \ %D%/packages/patches/python-pyan3-fix-absolute-path-bug.patch \ %D%/packages/patches/python-pyan3-fix-positional-arguments.patch \ %D%/packages/patches/python-pytorch-fix-codegen.patch \ diff --git a/gnu/packages/patches/python-property-cached-asyncio-3_11.patch b/gnu/packages/patches/python-property-cached-asyncio-3_11.patch new file mode 100644 index 0000000000..21c176947e --- /dev/null +++ b/gnu/packages/patches/python-property-cached-asyncio-3_11.patch @@ -0,0 +1,201 @@ +From d89186b47dc25c5ef5907c146edf3f792d50774b Mon Sep 17 00:00:00 2001 +Message-ID: +From: Nicolas Graves +Date: Wed, 2 Apr 2025 17:29:45 +0200 +Subject: [PATCH] Update to python 3.11 + +--- + property_cached/__init__.py | 21 +++------- + tests/test_async_cached_property.py | 3 +- + tests/test_coroutine_cached_property.py | 51 ++++++++++--------------- + 3 files changed, 27 insertions(+), 48 deletions(-) + +diff --git a/property_cached/__init__.py b/property_cached/__init__.py +index 3353048..c033542 100644 +--- a/property_cached/__init__.py ++++ b/property_cached/__init__.py +@@ -3,6 +3,7 @@ import functools + import pkg_resources + import threading + import weakref ++from inspect import iscoroutinefunction + from time import time + + +@@ -31,12 +32,12 @@ class cached_property(property): + if obj is None: + return self + +- if asyncio and asyncio.iscoroutinefunction(self.func): +- return self._wrap_in_coroutine(obj) +- + value = self.cache.get(obj, self._sentinel) + if value is self._sentinel: +- value = self.cache[obj] = self.func(obj) ++ if iscoroutinefunction(self.func): ++ self.cache[obj] = value = asyncio.ensure_future(self.func(obj)) ++ else: ++ self.cache[obj] = value = self.func(obj) + + return value + +@@ -49,18 +50,6 @@ class cached_property(property): + def __delete__(self, obj): + del self.cache[obj] + +- def _wrap_in_coroutine(self, obj): +- +- @functools.wraps(obj) +- @asyncio.coroutine +- def wrapper(): +- value = self.cache.get(obj, self._sentinel) +- if value is self._sentinel: +- self.cache[obj] = value = asyncio.ensure_future(self.func(obj)) +- return value +- +- return wrapper() +- + + class threaded_cached_property(cached_property): + """ +diff --git a/tests/test_async_cached_property.py b/tests/test_async_cached_property.py +index 1af139d..32b3410 100644 +--- a/tests/test_async_cached_property.py ++++ b/tests/test_async_cached_property.py +@@ -9,8 +9,7 @@ import property_cached as cached_property + + def unittest_run_loop(f): + def wrapper(*args, **kwargs): +- coro = asyncio.coroutine(f) +- future = coro(*args, **kwargs) ++ future = f(*args, **kwargs) + loop = asyncio.get_event_loop() + loop.run_until_complete(future) + +diff --git a/tests/test_coroutine_cached_property.py b/tests/test_coroutine_cached_property.py +index 40e443b..5864301 100644 +--- a/tests/test_coroutine_cached_property.py ++++ b/tests/test_coroutine_cached_property.py +@@ -14,8 +14,7 @@ import property_cached as cached_property + + def unittest_run_loop(f): + def wrapper(*args, **kwargs): +- coro = asyncio.coroutine(f) +- future = coro(*args, **kwargs) ++ future = f(*args, **kwargs) + loop = asyncio.get_event_loop() + loop.run_until_complete(future) + +@@ -33,14 +32,12 @@ def CheckFactory(cached_property_decorator): + self.control_total = 0 + self.cached_total = 0 + +- @asyncio.coroutine +- def add_control(self): ++ async def add_control(self): + self.control_total += 1 + return self.control_total + + @cached_property_decorator +- @asyncio.coroutine +- def add_cached(self): ++ async def add_cached(self): + self.cached_total += 1 + return self.cached_total + +@@ -52,74 +49,68 @@ class TestCachedProperty(unittest.TestCase): + + cached_property_factory = cached_property.cached_property + +- @asyncio.coroutine +- def assert_control(self, check, expected): ++ async def assert_control(self, check, expected): + """ + Assert that both `add_control` and 'control_total` equal `expected` + """ +- value = yield from check.add_control() ++ value = await check.add_control() + self.assertEqual(value, expected) + self.assertEqual(check.control_total, expected) + +- @asyncio.coroutine +- def assert_cached(self, check, expected): ++ async def assert_cached(self, check, expected): + """ + Assert that both `add_cached` and 'cached_total` equal `expected` + """ + print("assert_cached", check.add_cached) +- value = yield from check.add_cached ++ value = await check.add_cached + self.assertEqual(value, expected) + self.assertEqual(check.cached_total, expected) + + @unittest_run_loop +- @asyncio.coroutine +- def test_cached_property(self): ++ async def test_cached_property(self): + Check = CheckFactory(self.cached_property_factory) + check = Check() + + # The control shows that we can continue to add 1 +- yield from self.assert_control(check, 1) +- yield from self.assert_control(check, 2) ++ await self.assert_control(check, 1) ++ await self.assert_control(check, 2) + + # The cached version demonstrates how nothing is added after the first +- yield from self.assert_cached(check, 1) +- yield from self.assert_cached(check, 1) ++ await self.assert_cached(check, 1) ++ await self.assert_cached(check, 1) + + # The cache does not expire + with freeze_time("9999-01-01"): +- yield from self.assert_cached(check, 1) ++ await self.assert_cached(check, 1) + + # Typically descriptors return themselves if accessed though the class + # rather than through an instance. + self.assertTrue(isinstance(Check.add_cached, self.cached_property_factory)) + + @unittest_run_loop +- @asyncio.coroutine +- def test_reset_cached_property(self): ++ async def test_reset_cached_property(self): + Check = CheckFactory(self.cached_property_factory) + check = Check() + + # Run standard cache assertion +- yield from self.assert_cached(check, 1) +- yield from self.assert_cached(check, 1) ++ await self.assert_cached(check, 1) ++ await self.assert_cached(check, 1) + + # Clear the cache + del check.add_cached + + # Value is cached again after the next access +- yield from self.assert_cached(check, 2) +- yield from self.assert_cached(check, 2) ++ await self.assert_cached(check, 2) ++ await self.assert_cached(check, 2) + + @unittest_run_loop +- @asyncio.coroutine +- def test_none_cached_property(self): ++ async def test_none_cached_property(self): + class Check(object): + def __init__(self): + self.cached_total = None + + @self.cached_property_factory +- @asyncio.coroutine +- def add_cached(self): ++ async def add_cached(self): + return self.cached_total + +- yield from self.assert_cached(Check(), None) ++ await self.assert_cached(Check(), None) +-- +2.49.0 + diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 46efd10292..01dfc0799f 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -11700,7 +11700,9 @@ (define-public python-property-cached (method url-fetch) (uri (pypi-uri "property-cached" version ".zip")) (sha256 - (base32 "0wxv5sdx1p7ils36j6j6hfscz8v2vzbq212i8y8r0lrnxpqlx71y")))) + (base32 "0wxv5sdx1p7ils36j6j6hfscz8v2vzbq212i8y8r0lrnxpqlx71y")) + (patches + (search-patches "python-property-cached-asyncio-3_11.patch")))) (build-system pyproject-build-system) (arguments 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[propagated-inputs]: Remove python-typeguard. Add python-mpmath. [native-inputs]: Remove python-flake8, python-flake8-print, python-twine. Add python-typeguard, python-wheel. --- gnu/packages/machine-learning.scm | 15 +++++++-------- 1 file changed, 7 insertions(+), 8 deletions(-) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index fb1d5d2eed..615768c492 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -6098,24 +6098,23 @@ (define-public python-pyro-ppl (define-public python-linear-operator (package (name "python-linear-operator") - (version "0.5.2") + (version "0.6") (source (origin (method url-fetch) (uri (pypi-uri "linear_operator" version)) (sha256 (base32 - "03drb4hn9nn8jrqd9vbalihhahgpdm956hbs05bix7svradhknaw")))) + "0m56f3zrm8xh1bpwh4g7jfc79rf4j94g6zmz663b58pig4w6dqm9")))) (build-system pyproject-build-system) (propagated-inputs (list python-jaxtyping + python-mpmath python-pytorch - python-scipy - python-typeguard)) - (native-inputs (list python-flake8 - python-flake8-print - python-pytest + python-scipy)) + (native-inputs (list python-pytest python-setuptools python-setuptools-scm - python-twine)) + python-typeguard + python-wheel)) (home-page "https://github.com/cornellius-gp/linear_operator/") (synopsis "Linear operator implementation") (description "LinearOperator is a PyTorch package for abstracting away the From patchwork Fri Apr 4 19:16:53 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 41277 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 6509C27BBE9; Fri, 4 Apr 2025 20:18:48 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id B216727BBE2 for ; Fri, 4 Apr 2025 20:18:47 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1u0mYU-0006kc-He; Fri, 04 Apr 2025 15:18:18 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1u0mYO-0006hT-NV for guix-patches@gnu.org; Fri, 04 Apr 2025 15:18:12 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1u0mYO-0007pz-D1 for guix-patches@gnu.org; Fri, 04 Apr 2025 15:18:12 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=8q4wdqrkM5bkpGybgKZaZuS50uaQr/XeazuoVHeaeUY=; b=eJ/83I2WIUA+8+SFh0WIiib3SsB7i1L1SQUUobL383cpMf4NcY903O+arKvdy9My8x1XkM+VZiRq+wATwzovIXpdc2LEe5Ceoi69Sc/yo4OdonxxMzTK5idegtK25W/T3XuAyBRJiof/1eug+hCk9ThBiLuzU+g6/3yzgLWp/t4tzF5N1V/iwn7Qbkt7fP9LYjkk6bJq74wMO0TRRuCZe2yACoDNTvQymPfU3Awth7PXsYMAZXKu8ZnTt7h+GOte27rPRkwK1yKoCu6/lLeoXpuaxjLe2KYG0zdp8/kkZzkc23pwMbRwsiTabr8rpKA/k6hVZUFTDvrtMYKozSgpFw==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1u0mYO-0007Mc-7R for guix-patches@gnu.org; Fri, 04 Apr 2025 15:18:12 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#77541] [PATCH 21/38] gnu: python-pgmpy: Update to 1.0.0. 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[arguments]{test-flags}: Ignore failing tests. [native-inputs]: Add python-pyro-ppl, python-setuptools, python-wheel, python-xgboost. --- gnu/packages/statistics.scm | 16 +++++++++++++--- 1 file changed, 13 insertions(+), 3 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 40991caab5..f883786f81 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -8312,7 +8312,7 @@ (define-public ruby-enumerable-statistics (define-public python-pgmpy (package (name "python-pgmpy") - (version "0.1.24") + (version "1.0.0") (source (origin (method git-fetch) ;pypi package does not include test data @@ -8322,8 +8322,14 @@ (define-public python-pgmpy (file-name (git-file-name name version)) (sha256 (base32 - "0fvzh6v0yhgdryczamvzhfy2ymywkh0ssx4rl47xnfvi43hnij90")))) + "1hg6wrg3jcac71zn4gknni1wrn38wa86ka3sgp2bndz59mx6sr2s")))) (build-system pyproject-build-system) + (arguments + (list #:test-flags + #~(list "-k" (string-append + "not test_pillai" + " and not test_estimate_with_cache_no_llm_calls" + " and not test_estimate_with_orientations")))) (propagated-inputs (list python-daft python-joblib python-networkx @@ -8337,7 +8343,11 @@ (define-public python-pgmpy python-statsmodels python-tqdm)) (native-inputs (list python-mock - python-pytest)) + python-pyro-ppl + python-pytest + python-setuptools + python-wheel + python-xgboost)) (home-page "https://github.com/pgmpy/pgmpy") (synopsis "Probabilistic Graphical Models library") (description "This package provides a library for Probabilistic From patchwork Fri Apr 4 19:16:54 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 41284 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 0A87027BBEA; Fri, 4 Apr 2025 20:19:11 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id B4BFD27BBE2 for ; Fri, 4 Apr 2025 20:19:10 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1u0mZG-00079v-RL; Fri, 04 Apr 2025 15:19:07 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1u0mZE-00076T-3Z for guix-patches@gnu.org; Fri, 04 Apr 2025 15:19:04 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1u0mZD-0007wP-PB for guix-patches@gnu.org; Fri, 04 Apr 2025 15:19:03 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=ZbogFtOfj2qdtBOidsZn8rA8gJWKX9/MnijZp/qq9FU=; b=TC6t4oj6LXSH4phAeH+sMSEmRVyAxhtgMRHflvhdOr1OEp1TDMz2Z00dgEZaKMVLqfWF0GUqvpHrECMYV9RWeejuGaRbXPadO749YIHUQhOIdvMfQ4uj1rdYTHWZnAaLr008hlO3Iz5jnvioqfZekVZf2fMfPOuwcAekwLZA6ZvLFFG7mDqs+ETpitlAViD6vrXK2aKT/NUud5WLKSUlHtAj4tCVy83z6Nf8Beu6xD7mTrIJpWWQy9iv4N0nfdg2MoEBoLlYPYORGIE9Ebh1xKarTIfLo1/3JTMyYhxCDEYraJSyYHUqDVl379+zowWsQsZqJUQWLMlxRjolhxM50g==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1u0mZD-0007Qv-Hq for guix-patches@gnu.org; Fri, 04 Apr 2025 15:19:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#77541] [PATCH 22/38] gnu: python-qasync: Ignore failing test. 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[build-system]: Switch to pyproject. [arguments]{phases}: Remove argument. {test-flags}: Ignore failing tests. [native-inputs]: Add python-setuptools. --- gnu/packages/python-crypto.scm | 15 ++++++--------- 1 file changed, 6 insertions(+), 9 deletions(-) diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm index 13ad37bca8..fc57afb862 100644 --- a/gnu/packages/python-crypto.scm +++ b/gnu/packages/python-crypto.scm @@ -1634,17 +1634,14 @@ (define-public python-pgpy (uri (pypi-uri "PGPy" version)) (sha256 (base32 "10w3h934fi1ijx72ppn67a50yhkf8n1db6xx02gk2fjc7wsjx717")))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "pytest"))))))) + (list #:test-flags + ;; All broken tests are in this file. + ;; They fail with ValueError: key_size must be at least 1024-bits. + #~(list "--ignore" "tests/test_10_exceptions.py"))) (native-inputs - (list python-pytest - python-wheel)) + (list python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-cryptography python-pyasn1)) (home-page "https://github.com/SecurityInnovation/PGPy") (synopsis "Python implementation of OpenPGP")