From patchwork Mon Feb 27 10:28:38 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 47436 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 106CC16C21; Mon, 27 Feb 2023 10:31:25 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 5CA2616C10 for ; Mon, 27 Feb 2023 10:31:23 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pWamP-0006u5-14; Mon, 27 Feb 2023 05:30:51 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWalg-0006er-BI for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:08 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pWalf-0008EH-Mn for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pWale-0001Ua-Gb; Mon, 27 Feb 2023 05:30:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61838] [PATCH 01/13] gnu: Add r-simplermarkdown. References: <669c9a4b05f74824b87f3bb57fd23c98@mdc-berlin.de> In-Reply-To: <669c9a4b05f74824b87f3bb57fd23c98@mdc-berlin.de> Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 27 Feb 2023 10:30:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61838 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61838@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61838-submit@debbugs.gnu.org id=B61838.16774937525517 (code B ref 61838); Mon, 27 Feb 2023 10:30:02 +0000 Received: (at 61838) by debbugs.gnu.org; 27 Feb 2023 10:29:12 +0000 Received: from localhost ([127.0.0.1]:46101 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWakp-0001Qo-SW for submit@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:12 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:57909) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWako-0001QK-4Y for 61838@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:10 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1677493743; x=1679308144; bh=+4VQSmDmJytRlgb SK9ID36CQ2wEOhXrTdt5k3zgIPNY=; b=KlKlINnGrt7QBVKFWMKXMmumvNKoI+Q ZnYrkwIJ4MtWoe8hIfe7MeBql5plquqNJMhTuGbid8Fo4yA3hTjXg1Jb3/YxoP4U a0BPgU7es5DL/y0glw4apcG1vc1vuJeYz4tnVPQV/0VjGa9B35LiyQgsnt/43YLp aS7STh55n43Q= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 82B04160123 for <61838@debbugs.gnu.org>; Mon, 27 Feb 2023 11:29:03 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 27 Feb 2023 11:29:00 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 27 Feb 2023 11:28:38 +0100 Message-ID: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-AS-Result: No-10--7.317600-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6GFMYlDUzwr0XjfR3d0weRh7W0X9FnZcMeA9 iB1Lee2SGsZX0q3FpiOhAZQXEXXZuqOJ+h+s5fKarm7DrUlmNkIAy6p60ZV62yA7duzCw6dLdB/ CxWTRRu92KvEVWmYr1qULJ6yyh20lz0m1eU2mBKmrRfoMnKlyiYfGjBoWP0C0KfPgsLBaFaA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--7.317600-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-SNTS-SMTP: 5F0EAB2976B78B6D045B29FEA66021500D76CF2CBD041F520855D4837E2E67602002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-simplermarkdown): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) base-commit: 5d10644371abd54d0edcd638691113f0a92de743 diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c80e98134a..f63112c3be 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9652,6 +9652,28 @@ (define-public r-signal It also includes interpolation functions.") (license license:gpl2))) +(define-public r-simplermarkdown + (package + (name "r-simplermarkdown") + (version "0.0.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "simplermarkdown" version)) + (sha256 + (base32 "069pgx5m22rdqa21lyn5zqm9ym3g7w6z1d2wjwms8b1f2cp6266g")))) + (properties `((upstream-name . "simplermarkdown"))) + (build-system r-build-system) + (propagated-inputs (list r-rjson)) + (home-page "https://github.com/djvanderlaan/simplermarkdown") + (synopsis "Simple engine for generating reports using R") + (description + "This package runs R-code present in a pandoc markdown file and includes the +resulting output in the resulting markdown file. This file can then be converted +into any of the output formats supported by pandoc. The package can also be used +as an engine for writing package vignettes.") + (license license:gpl3+))) + (define-public r-gsubfn (package (name "r-gsubfn") From patchwork Mon Feb 27 10:28:39 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 47442 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id EFEEE16C29; Mon, 27 Feb 2023 10:32:43 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 764D416C21 for ; Mon, 27 Feb 2023 10:32:42 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pWam8-0006oF-Ch; Mon, 27 Feb 2023 05:30:32 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWalg-0006eu-Jq for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:09 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pWalf-0008H6-WB for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:04 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pWale-0001Ui-Tr; Mon, 27 Feb 2023 05:30:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61838] [PATCH 02/13] gnu: Add r-rcppspdlog. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 27 Feb 2023 10:30:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61838 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61838@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61838-submit@debbugs.gnu.org id=B61838.16774937575552 (code B ref 61838); Mon, 27 Feb 2023 10:30:02 +0000 Received: (at 61838) by debbugs.gnu.org; 27 Feb 2023 10:29:17 +0000 Received: from localhost ([127.0.0.1]:46106 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWaku-0001RG-91 for submit@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:17 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:47821) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWakn-0001QI-OW for 61838@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:10 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1677493742; x=1679308143; bh=g2CEWIR8yJnhZUl/q7kkqWTa5Rr+c8dFSVBf/72RreA=; b=Oe1q1LW2LFC+ XEgJaA8LrEfmZYItshCCfFvct+Jyl5Idk/7iExVitGfqMhmc99M0Fsy90L4+7Wod KnTkT4jqRWajMuIninC2YVwW1udi6HEjv59v6x5B7fdswV0YXmJP/JKbpG1GdrGu Fko7i0PneWT5UOvtu/N/3KO0Q383Jbo= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 99FA216011B for <61838@debbugs.gnu.org>; Mon, 27 Feb 2023 11:29:01 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 27 Feb 2023 11:29:01 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 27 Feb 2023 11:28:39 +0100 Message-ID: <20230227102850.18782-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> References: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-AS-Result: No-10--5.656400-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6dXu122+iJtrWN3XQ/7wsT6s1VKAXn4vh2Lg EVfggSliR1PJRLXDzQe03npH1yTi1h3Oo6YoUrdbdCok3ibXlQeuLFZZYlisfHxPMjOKY7A+u65 UDD0aDgsRB0bsfrpPIXzYxeQR1DvsGT2h+gGH6EeRQgfoy3PhxHxz319UyuAYKXn75vU6Njuyk4 nnWoH35 X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.656400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-SNTS-SMTP: C85EE0AE63821093B4AF493EE5BEBEC85018F126943782501D17F48E8218DF982002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-rcppspdlog): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f63112c3be..46b8dbc9ec 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4992,6 +4992,30 @@ (define-public r-rcppml factorization and divisive clustering for large sparse and dense matrices.") (license license:gpl2+))) +(define-public r-rcppspdlog + (package + (name "r-rcppspdlog") + (version "0.0.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "RcppSpdlog" version)) + (sha256 + (base32 "1nan0hm49xdl2l1lskm1jf01clfh7aw2v6h57j35qysvg8219fcx")))) + (properties `((upstream-name . "RcppSpdlog"))) + (build-system r-build-system) + (propagated-inputs (list r-rcpp)) + (native-inputs (list r-simplermarkdown)) + (home-page "https://github.com/eddelbuettel/rcppspdlog") + (synopsis "R and C++ interfaces to 'spdlog' C++ header library for logging") + (description + "The spdlog library is a widely-used and very capable header-only C++ library +for logging. This package includes its headers as an R package to permit other R +packages to deploy it via a simple @code{LinkingTo: RcppSpdlog}. As of version +0.0.9, it also provides both simple R logging functions and compiled functions +callable by other packages.") + (license license:gpl2+))) + (define-public r-rcppthread (package (name "r-rcppthread") From patchwork Mon Feb 27 10:28:40 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 47437 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id D43D416C26; Mon, 27 Feb 2023 10:31:48 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 2266016C1C for ; Mon, 27 Feb 2023 10:31:48 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pWam2-0006jz-ID; Mon, 27 Feb 2023 05:30:26 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWalg-0006es-Bx for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:09 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pWalf-0008H5-VF for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:04 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pWalf-0001Up-9E; Mon, 27 Feb 2023 05:30:03 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61838] [PATCH 03/13] gnu: Add r-n2r. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 27 Feb 2023 10:30:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61838 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61838@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61838-submit@debbugs.gnu.org id=B61838.16774937575566 (code B ref 61838); Mon, 27 Feb 2023 10:30:03 +0000 Received: (at 61838) by debbugs.gnu.org; 27 Feb 2023 10:29:17 +0000 Received: from localhost ([127.0.0.1]:46109 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWakv-0001RV-4f for submit@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:17 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:46741) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWako-0001QM-RZ for 61838@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:11 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1677493744; x=1679308145; bh=pdGZP7oIpkRbDj1ZMyK+XXpeyTl2az2d/wbekbg3miY=; b=ic5OA3vgS4zC 9SH3ojjliiaIDReuDB+LJpkfalS6Aps5sgnK1ckGp7g95gs4HQ48oMy9S2M9TgKv upk/r8QXdeCdwVwyJrxGPydf+HgbE066+EbN/e0JNw6qQ4P69OWo1VYMyFBkhwcf YZKXsEtRaXhgHqRTTGfflTWybsaAwV0= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id BFCC816014E for <61838@debbugs.gnu.org>; Mon, 27 Feb 2023 11:29:04 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 27 Feb 2023 11:29:01 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 27 Feb 2023 11:28:40 +0100 Message-ID: <20230227102850.18782-3-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> References: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-AS-Result: No-10-1.719400-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6L2JUO7sQ9/yCMN25048EeqY5ZGw7wyeHNZ6 ZIsdh38qjQfznAHGNCFaqBFpUBa9V0N7DjAdxZNTi8zVgXoAltuJ5hXsnxp7jC24oEZ6SpSk6XE E7Yhw4FomRy0XNgU9HzUNOfcVPXVriB9EDrRKq58NarKsMxzy0kgBpBbwEirVAZTWiSfgxfXNoU to89wycg5N+bsuxLfIWhuHBSve6ht8iatREjfpDE8nb9DwdQ4C2jbSab1pg0UjxFpwn53SOfhj5 CZkmSyI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-1.719400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-SNTS-SMTP: 167AF0EA3CB291F954EF2FC6F781DB61ED79F159C955C904D398BC7CEA9FC42B2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-n2r): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 46b8dbc9ec..184cbd6d7f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8334,6 +8334,32 @@ (define-public r-tinytest ") (license license:gpl3))) +(define-public r-n2r + (package + (name "r-n2r") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "N2R" version)) + (sha256 + (base32 "12bv7xx6j6222qgpv6g61i68017fz0x6fjg9a9k5yhgw3zk05hpk")))) + (properties `((upstream-name . "N2R"))) + (build-system r-build-system) + (propagated-inputs + (list r-matrix + r-rcpp + r-rcppeigen + r-rcppspdlog)) + (home-page "https://github.com/kharchenkolab/N2R") + (synopsis "Fast and scalable approximate k-Nearest Neighbor search methods") + (description + "This package implements methods to perform fast approximate K-nearest neighbor +search on input matrix. Algorithm based on the N2 implementation of an approximate +nearest neighbor search using hierarchical @acronym{NSW, Navigable Small World} +graphs.") + (license license:asl2.0))) + (define-public r-network (package (name "r-network") From patchwork Mon Feb 27 10:28:41 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 47432 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id A397D16C2B; Mon, 27 Feb 2023 10:31:10 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D0D3C16C10 for ; Mon, 27 Feb 2023 10:31:09 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pWam4-0006kF-QG; Mon, 27 Feb 2023 05:30:29 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWalj-0006f6-D8 for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:16 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pWali-0008Ij-Pr for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:06 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pWali-0001Vx-GS; Mon, 27 Feb 2023 05:30:06 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61838] [PATCH 04/13] gnu: Add r-sccore. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 27 Feb 2023 10:30:06 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61838 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61838@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61838-submit@debbugs.gnu.org id=B61838.16774937725654 (code B ref 61838); Mon, 27 Feb 2023 10:30:06 +0000 Received: (at 61838) by debbugs.gnu.org; 27 Feb 2023 10:29:32 +0000 Received: from localhost ([127.0.0.1]:46128 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWalA-0001T1-2B for submit@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:32 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:49713) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWakw-0001R9-LV for 61838@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:18 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1677493752; x=1679308153; bh=kK7vHHrdr24/hACyZtYkZTslEM1LUabU0B2virYCrNY=; b=N2PEQ+jEZHLD mEv/gSwBS8jrOec5+yya+8EdpFTfiGUwRhD0zBf6j0TBm26TGa3aM//Fnivtexe8 gC0whoRdLEdyblXjPViZ6Q1x5kCnDImLLq/gHVKvYRWYJFw5mHfTi9QICZIOxcM9 Zbea4y46Euc0xh2yau71qfnqYoo3YGY= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 1B7DA16011B for <61838@debbugs.gnu.org>; Mon, 27 Feb 2023 11:29:12 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 27 Feb 2023 11:29:01 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 27 Feb 2023 11:28:41 +0100 Message-ID: <20230227102850.18782-4-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> References: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-AS-Result: No-10--0.400400-5.000000 X-TMASE-MatchedRID: toN6SH028bX/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCyAkbY6/7arYC99T+uJIleRin8 0GPYQvJ/F+KCpGE37CJsoi2XrUn/Jn6KdMrRsL14qtq5d3cxkNRqXnrxrKCOXFNZvrbgGmIH6/r RmH7yfnPGkPN0XUwXyL/3FQcdprE/XCgvxehdbjWYdoN8+OB8LVpbhfV+B4egf0yVBQcER00FUh i5/kgQuDUEkBTZ8vOLxlyTCXQR4xioA5PA4dQuxuYpJR2kheXd+3BndfXUhXQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--0.400400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-SNTS-SMTP: B6EAEB4C8329D6CE4538D685EA5378FC838E4F0985C53EEAB71715FA6AFFE85D2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-sccore): New variable. --- gnu/packages/cran.scm | 42 ++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 184cbd6d7f..da2b2521a7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22401,6 +22401,48 @@ (define-public r-lintr code edited with @code{RStudio IDE}, @code{Emacs} and @code{Vim}.") (license license:expat))) +(define-public r-sccore + (package + (name "r-sccore") + (version "1.0.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "sccore" version)) + (sha256 + (base32 "12gm7pb6xbvf9kdsgl7ldw1c54ga9fgk99ps2kx2cq91q9m0ld4r")))) + (properties `((upstream-name . "sccore"))) + (build-system r-build-system) + (propagated-inputs + (list r-dplyr + r-ggplot2 + r-ggrepel + r-igraph + r-irlba + r-magrittr + r-matrix + r-pbmcapply + r-proc + r-rcpp + r-rcpparmadillo + r-rcppeigen + r-rcppprogress + r-rlang + r-scales + r-tibble + r-uwot + r-withr)) + (home-page "https://github.com/kharchenkolab/sccore") + (synopsis "Core utilities for single-cell RNA-Seq") + (description + "This package implements core utilities for single-cell RNA-seq data analysis. +Contained within are utility functions for working with @acronym{DE, differential +expression} matrices and count matrices, a collection of functions for manipulating +and plotting data via ggplot2, and functions to work with cell graphs and cell +embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP, +collapsing vertices of each cluster in the graph, and propagating graph labels.") + (license license:gpl3))) + (define-public r-scs (package (name "r-scs") From patchwork Mon Feb 27 10:28:42 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 47435 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 0A7A316C21; Mon, 27 Feb 2023 10:31:18 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id C732C16C10 for ; Mon, 27 Feb 2023 10:31:11 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pWam7-0006lp-7S; Mon, 27 Feb 2023 05:30:31 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWalg-0006et-Lt for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:09 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pWalf-0008Fr-QO for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pWalf-0001Uy-LQ; Mon, 27 Feb 2023 05:30:03 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61838] [PATCH 05/13] gnu: Add r-leidenalg. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 27 Feb 2023 10:30:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61838 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61838@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61838-submit@debbugs.gnu.org id=B61838.16774937585578 (code B ref 61838); Mon, 27 Feb 2023 10:30:03 +0000 Received: (at 61838) by debbugs.gnu.org; 27 Feb 2023 10:29:18 +0000 Received: from localhost ([127.0.0.1]:46112 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWakv-0001Ri-Jr for submit@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:18 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:54725) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWakp-0001QN-IV for 61838@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:12 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1677493745; x=1679308146; bh=HkiwVsjsYJi9RZ/5sV78x3i3hBSGXsMoSuJO96A3bsg=; b=g00Zmrlqz/J4 5JEYnQsOfbslLaKtSyQZcDy3GEZbHhqy4z4OGPO+VxKRcmubvl8+jZ+24qEodHdg Ywd3vaiFaZlnK3vQBSIbqy/7V0aI8qeDrJ2f3P/8t/2PSfT+URzdZ8i/xid8NBeI zibWMYf9+L5R1MaaWBX0iMnLxGn60UM= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 7A812160157 for <61838@debbugs.gnu.org>; Mon, 27 Feb 2023 11:29:05 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 27 Feb 2023 11:29:01 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 27 Feb 2023 11:28:42 +0100 Message-ID: <20230227102850.18782-5-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> References: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-AS-Result: No-10-2.199100-5.000000 X-TMASE-MatchedRID: SzbEz7SZt2v/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeNTZ+DFCYZ6L6Pn cFCKybazRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v8XjfR3d0weRn8PhVj1fZ+6Ovj cPt7lSgOPyewSzonlQ/r8ztE1BNUXFA/vEqOUr49H4a2iJdV4MeOSS2dsOh9pU72YOAMDJjieAi CmPx4NwGmRqNBHmBvepuP9zg477pEqtq5d3cxkNRqXnrxrKCOXXz2rWAd+ccbEJzAmiQN5hGKAF gT6tgFAGm4GiR+m3eBPTK8cTqF7d61BZ2PJTcHYI6/uOY+4KjWR9NIHayOz1H/zrJEIGPrWDUEk BTZ8vOLxlyTCXQR4xioA5PA4dQuxuYpJR2kheXd+3BndfXUhXQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-2.199100-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-SNTS-SMTP: 931BE625091C4C97D9E6CB0572611C733234BE8BB5FA8D77A49DEC5326BBFBF82002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-leidenalg): New variable. --- gnu/packages/cran.scm | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index da2b2521a7..3784faa752 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23308,6 +23308,41 @@ (define-public r-leiden guaranteeing well-connected communities.\" .") (license license:gpl3))) +(define-public r-leidenalg + (package + (name "r-leidenalg") + (version "1.0.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "leidenAlg" version)) + (sha256 + (base32 "1z96zrsms93gspylmficaggb0xj94kq9rg3p2svdbb451jbga9an")))) + (properties `((upstream-name . "leidenAlg"))) + (build-system r-build-system) + (inputs + (list glpk + libxml2)) + (propagated-inputs + (list gmp + r-igraph + r-matrix + r-rcpp + r-rcpparmadillo + r-rcppeigen + r-sccore)) + (native-inputs (list gfortran)) + (home-page "https://github.com/kharchenkolab/leidenAlg") + (synopsis "Leiden algorithm via an R interface") + (description + "This package implements an R interface to the Leiden algorithm, an iterative +community detection algorithm on networks. The algorithm is designed to converge +to a partition in which all subsets of all communities are locally optimally assigned, +yielding communities guaranteed to be connected. The implementation proves to be +fast, scales well, and can be run on graphs of millions of nodes (as long as they can +fit in memory).") + (license license:gpl3))) + (define-public r-patchwork (package (name "r-patchwork") From patchwork Mon Feb 27 10:28:43 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 47439 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 8A4E216C26; Mon, 27 Feb 2023 10:32:17 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id E78B716C10 for ; Mon, 27 Feb 2023 10:32:16 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pWam7-0006mR-Oj; Mon, 27 Feb 2023 05:30:31 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWalg-0006ew-Nu for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:09 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pWalg-0008Hh-DZ for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:04 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pWalg-0001VD-91; Mon, 27 Feb 2023 05:30:04 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61838] [PATCH 06/13] gnu: Add r-drat. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 27 Feb 2023 10:30:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61838 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61838@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61838-submit@debbugs.gnu.org id=B61838.16774937585584 (code B ref 61838); Mon, 27 Feb 2023 10:30:04 +0000 Received: (at 61838) by debbugs.gnu.org; 27 Feb 2023 10:29:18 +0000 Received: from localhost ([127.0.0.1]:46114 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWakw-0001Rv-9L for submit@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:18 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:41683) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWakq-0001QP-B0 for 61838@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:12 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1677493746; x=1679308147; bh=6pGR/H6d2vzekEq4EpkW+oxEe6fEG7U5NexBPk8Jf08=; b=Z2pWS3cCouH9 OCl5XeFcMe8+kN+A11vcxA3TXvM1hDSIM9m6Cehq8mZlpGc5YvMMMnZWTtEpSvGy LtWihWdbtCqWB9uYwQ5mzFXWUk+6OmBlCaiZGOgWDql/7Vss8BGHPckVgvE2aFwk yhSSTwqPxzM5rMDfYMoDfpxJrITJcIU= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 3634B16015F for <61838@debbugs.gnu.org>; Mon, 27 Feb 2023 11:29:06 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 27 Feb 2023 11:29:01 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 27 Feb 2023 11:28:43 +0100 Message-ID: <20230227102850.18782-6-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> References: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-AS-Result: No-10--5.602400-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6sZaZ5UBQsocXjfR3d0weRkh03B1j/kTwNFz ikxQUUcu6Hd/enhcPQMiCi6ZMaQXn+fCnS6ApknzdCok3ibXlQeuLFZZYlisfHxPMjOKY7A+u65 UDD0aDgsRB0bsfrpPIXzYxeQR1Dvu9nWD8SGkvaKaLCZem3oyDi+vywNj0tSXicDICAIwbIX6iU TvELiFl X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.602400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-SNTS-SMTP: 8210F13E2FD6B64018C5ECB64C2183A7576215B04A2E8344D827820B3FF2C4192002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-drat): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3784faa752..dbf98cdd81 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6380,6 +6380,29 @@ (define-public r-lava variable models.") (license license:gpl3))) +(define-public r-drat + (package + (name "r-drat") + (version "0.2.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "drat" version)) + (sha256 + (base32 "191yxlj9jccakmz27g7n9izfcy19kj3fgnw4w6zl9iq66787qpm6")))) + (properties `((upstream-name . "drat"))) + (build-system r-build-system) + (native-inputs (list r-simplermarkdown)) + (home-page "https://github.com/eddelbuettel/drat") + (synopsis "'Drat' R archive template") + (description + "This package helps you with creation and use of R repositories via helper +functions to insert packages into a repository, and to add repository information +to the current R session. Two primary types of repositories are support: gh-pages +at GitHub, as well as local repositories on either the same machine or a local +network. Drat is a recursive acronym: Drat R Archive Template.") + (license license:gpl2+))) + (define-public r-drr (package (name "r-drr") From patchwork Mon Feb 27 10:28:44 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 47441 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 0E1DD16C2B; Mon, 27 Feb 2023 10:32:43 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 4CEAA16C10 for ; Mon, 27 Feb 2023 10:32:42 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pWam8-0006ps-T2; Mon, 27 Feb 2023 05:30:32 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWalh-0006ey-9F for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:12 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pWalg-0008Hx-WF for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:05 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pWalg-0001VN-Sb; Mon, 27 Feb 2023 05:30:04 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61838] [PATCH 07/13] gnu: Add r-dendsort. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 27 Feb 2023 10:30:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61838 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61838@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61838-submit@debbugs.gnu.org id=B61838.16774937715625 (code B ref 61838); Mon, 27 Feb 2023 10:30:04 +0000 Received: (at 61838) by debbugs.gnu.org; 27 Feb 2023 10:29:31 +0000 Received: from localhost ([127.0.0.1]:46120 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWal8-0001Sd-LW for submit@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:30 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:40091) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWakt-0001Qa-Ux for 61838@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:16 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1677493747; x=1679308148; bh=W4koQ6UEihFXKLKU4e9J0pXtX0KdshlVwlbxP6xFdHA=; b=AVX7e+5evmQy pIQ9IH+K7g0JlvqCm6xNYqV+ZKY2Ake8hAwtBZhkORRQMiyFxvZx/s5ZowFpX7Lj P0ZZlcH53pBrziT30GTza0+ZfRu9e2YE6yRLEPM+ZLbu/98E3xe9aeOJoklqD0tu ZgXVar1IOJXAoYK/LXrXYZlss/X5Ri0= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id F20F8160165 for <61838@debbugs.gnu.org>; Mon, 27 Feb 2023 11:29:06 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 27 Feb 2023 11:29:01 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 27 Feb 2023 11:28:44 +0100 Message-ID: <20230227102850.18782-7-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> References: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-AS-Result: No-10-1.070100-5.000000 X-TMASE-MatchedRID: 54gb2yeIOXT/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEGQb gS2jMHPfRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v++F//Mn3a2w6Y5ZGw7wyeHU31 U0YBeWoJur4VwB2QBhOvctueKsC+N0N7DjAdxZNTi8zVgXoAltsIJ+4gwXrEtwrbXMGDYqV/x/F 0UMEoTu9i7bQL49QLr+z8Q0x0M9pjFRlvGDcpJCYH11Z98YXnRTjNq8sKSpTl2U9sb+6+uyLp+C x+pweKl5uhEUSIq0GLWyEfHH6RoHShCDgyssE8uo3yYJV8x0OrMUVc0s17dsX/q4TD2v7K1 X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-1.070100-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-SNTS-SMTP: 24BBE92DD8A3A9FF8BD21CDFDCC9530C8C40EEF94ECD7325B5EF0613CB988BD52002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-dendsort): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index dbf98cdd81..d69d214d64 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5333,6 +5333,33 @@ (define-public r-dendextend ;; Any of these versions (license (list license:gpl2 license:gpl3)))) +(define-public r-dendsort + (package + (name "r-dendsort") + (version "0.3.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "dendsort" version)) + (sha256 + (base32 "0rs7y471wrhkgibxdmfh5xhp3pa004rrlm2w08b6qli5gq4im5d2")))) + (properties `((upstream-name . "dendsort"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://github.com/evanbiederstedt/dendsort") + (synopsis "Modular leaf ordering methods for dendrogram nodes") + (description + "The pacake represents an implementation of functions to optimize ordering +of nodes in a dendrogram, without affecting the meaning of the dendrogram. A +dendrogram can be sorted based on the average distance of subtrees, or based on +the smallest distance value. These sorting methods improve readability and +interpretability of tree structure, especially for tasks such as comparison of +different distance measures or linkage types and identification of tight clusters +and outliers. As a result, it also introduces more meaningful reordering for a +coupled heatmap visualization.") + ;; Any of these versions + (license (list license:gpl2 license:gpl3)))) + (define-public r-getoptlong (package (name "r-getoptlong") From patchwork Mon Feb 27 10:28:45 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 47430 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 4D40F16C26; Mon, 27 Feb 2023 10:30:32 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 1F2B016C10 for ; Mon, 27 Feb 2023 10:30:29 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pWam1-0006i7-Tl; Mon, 27 Feb 2023 05:30:26 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWalh-0006ez-RM for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:12 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pWalh-0008IC-JN for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:05 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pWalh-0001VW-Be; Mon, 27 Feb 2023 05:30:05 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61838] [PATCH 08/13] gnu: Add r-pagoda2. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 27 Feb 2023 10:30:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61838 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61838@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61838-submit@debbugs.gnu.org id=B61838.16774937715632 (code B ref 61838); Mon, 27 Feb 2023 10:30:05 +0000 Received: (at 61838) by debbugs.gnu.org; 27 Feb 2023 10:29:31 +0000 Received: from localhost ([127.0.0.1]:46122 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWal9-0001Sf-08 for submit@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:31 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:45099) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWakt-0001Qb-VK for 61838@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:16 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1677493747; x=1679308148; bh=TAr8bN4SBGRD6Z1o4oIBQknhryNnOw7burNXL93rkcQ=; b=S4arCkLFexxG lBqVcqo6foLziq6QEny8oYr9V88O0jDj/5BiwDoqmI3/EUUcFOrh0rzaTMUyYcTB iGs3DQ5hetKXUJqCcAhsub6+wWExC6mk02u2oCBaWUNwq7VwIiNd0V8LeXYFZRmp lFhxuUg/uTZoW5rMW0x6P7ubT2PTMYE= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id DD477160167 for <61838@debbugs.gnu.org>; Mon, 27 Feb 2023 11:29:07 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 27 Feb 2023 11:29:01 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 27 Feb 2023 11:28:45 +0100 Message-ID: <20230227102850.18782-8-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> References: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-AS-Result: No-10-0.515800-5.000000 X-TMASE-MatchedRID: 2wfub8HDRfP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEIjG wx10ej9iRRa406V/YwyBUGewL2YXt3xSs/yDFAAwwLYk+NSxc5r4qCLIu0mtIKY5ZGw7wyeHyce sW0mt376cCvEBGezxXEtybYtfaziKvCGUW+fAEvCXVXMu1aPavF13okaUN2CbU72YOAMDJjieAi CmPx4NwBnUJ0Ek6yhjxEHRux+uk8jfhP1xgyx3DOmb+S8+xOp7iNiN5JPLLt3Yh8nt1+GomUGE6 6fTYkRrQ6974UpoabFnisIEebihY9EVQskI952B2fE/EX8N0SZHM+4hpa/QfdxSR7be7fnTFTs4 ljtt094P2K/+wkyxVzs7KL+6XFB4pSBl0hpeDh8= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-0.515800-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-SNTS-SMTP: 71A0F95E5BFB674366D44CDEB83863A5A4F1ABF4CCC04F4FCF9DE6451751AACF2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-pagoda2): New variable. --- gnu/packages/cran.scm | 52 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 52 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d69d214d64..e810924766 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2031,6 +2031,58 @@ (define-public r-pacman functions which can speed up workflow.") (license license:gpl2))) +(define-public r-pagoda2 + (package + (name "r-pagoda2") + (version "1.0.10") + (source + (origin + (method url-fetch) + (uri (cran-uri "pagoda2" version)) + (sha256 + (base32 "18ip8j5l5c3hqw1xsf5wnyas55i2mhk09phy68kjkjdgcymmpg7c")))) + (properties `((upstream-name . "pagoda2"))) + (build-system r-build-system) + (propagated-inputs + (list r-dendsort + r-drat + r-fastcluster + r-igraph + r-irlba + r-magrittr + r-mass + r-matrix + r-mgcv + r-n2r + r-plyr + r-r-utils + r-r6 + r-rcpp + r-rcpparmadillo + r-rcppeigen + r-rcppprogress + r-rjson + r-rlang + r-rmtstat + r-rook + r-rtsne + r-sccore + r-urltools)) + (home-page "https://github.com/kharchenkolab/pagoda2") + (synopsis "Single cell analysis and differential expression") + (description + "The package offers functions for analyzing and interactively exploring large-scale +single-cell RNA-seq datasets. Pagoda2 primarily performs normalization and differential +gene expression analysis, with an interactive application for exploring single-cell +RNA-seq datasets. It performs basic tasks such as cell size normalization, gene +variance normalization, and can be used to identify subpopulations and run differential +expression within individual samples. pagoda2 was written to rapidly process modern +large-scale scRNAseq datasets of approximately 1e6 cells. The companion web application +allows users to explore which gene expression patterns form the different subpopulations +within your data. The package also serves as the primary method for preprocessing +data for conos.") + (license license:gpl3))) + (define-public r-pals (package (name "r-pals") From patchwork Mon Feb 27 10:28:46 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 47433 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id A646116C35; Mon, 27 Feb 2023 10:31:13 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id DAE6816C21 for ; Mon, 27 Feb 2023 10:31:09 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pWam9-0006q9-1K; Mon, 27 Feb 2023 05:30:33 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWali-0006f1-Dv for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:12 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pWalh-0008IN-Tw for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:05 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pWalh-0001Vf-OQ; Mon, 27 Feb 2023 05:30:05 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61838] [PATCH 09/13] gnu: Add r-conos. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 27 Feb 2023 10:30:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61838 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61838@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61838-submit@debbugs.gnu.org id=B61838.16774937715639 (code B ref 61838); Mon, 27 Feb 2023 10:30:05 +0000 Received: (at 61838) by debbugs.gnu.org; 27 Feb 2023 10:29:31 +0000 Received: from localhost ([127.0.0.1]:46124 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWal9-0001Sn-BQ for submit@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:31 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:45845) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWaku-0001Qi-9X for 61838@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:17 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1677493748; x=1679308149; bh=vhvry3Oug6+QcJTtDU8K80p1dVPnS5xx1fe4zLPstvA=; b=beV6cjnm6tep cC//1yYps5ywA4Rtv06jStr7TSWrkCLPeKsPighz5NSSxnpacsA00Ly+eH9GWfIQ 7vrCtoo9m2mjWi9RB5Z4WfuR5okClYcyqITKAPLABJIsVVtgaTC2pUmV2NAEY5TK KS4gqPoEcv7RGGwS5DeMwFUKooEiq2c= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id B9885160171 for <61838@debbugs.gnu.org>; Mon, 27 Feb 2023 11:29:08 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 27 Feb 2023 11:29:02 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 27 Feb 2023 11:28:46 +0100 Message-ID: <20230227102850.18782-9-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> References: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-AS-Result: No-10--2.734900-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEN+a z/Eyz14URRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v8ejl8XURi8fKY5ZGw7wyeHUug dhXQEiwM71P4XZynZYlc18FUgH1cwxzdZUAxpvx1H4a2iJdV4MRDkv2q7d+VDlwV2iaAfSWcURS Scn+QSXt0H8LFZNFG7doMssNsUwYXJ5h5eSCMT+A9xmMnWtx9B1i+4D/HQrfhDI4QrStZfrhtvx S77C2D1qtsBANBlnkTAxACcf30+b+HoWhTvAMM56mS2OwSL+jzHpeHdXLjLb473WzsXAufzELZr sYgA6obyh3JNelCjdRkfAFx3Dn4y X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.734900-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-SNTS-SMTP: 6616DCCC2E4E410CAA615E86CA5E663E57F9479CCEF5B7AC12F4E8CB98D768922002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-conos): New variable. --- gnu/packages/bioconductor.scm | 50 +++++++++++++++++++++++++++++++++++ 1 file changed, 50 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index bc3bd8c930..333df756c9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5581,6 +5581,56 @@ (define-public r-complexheatmap self-defined annotation graphics.") (license license:gpl2+))) +;;This package depends on r-complexheatmap +(define-public r-conos + (package + (name "r-conos") + (version "1.5.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "conos" version)) + (sha256 + (base32 "1wdhb3jxh4id6xaghawzip8s264g9jxp4i5xy7jfhi67yfxszx6w")))) + (properties `((upstream-name . "conos"))) + (build-system r-build-system) + (propagated-inputs + (list r-abind + r-complexheatmap + r-cowplot + r-dendextend + r-dplyr + r-ggplot2 + r-ggrepel + r-gridextra + r-igraph + r-irlba + r-leidenalg + r-magrittr + r-matrix + r-n2r + r-r6 + r-rcpp + r-rcpparmadillo + r-rcppeigen + r-rcppprogress + r-reshape2 + r-rlang + r-rtsne + r-sccore +)) + (home-page "https://github.com/kharchenkolab/conos") + (synopsis "Clustering on network of samples") + (description + "This package wires together large collections of single-cell RNA-seq datasets, +which allows for both the identification of recurrent cell clusters and the propagation +of information between datasets in multi-sample or atlas-scale collections. Conos +focuses on the uniform mapping of homologous cell types across heterogeneous sample +collections. For instance, users could investigate a collection of dozens of +peripheral blood samples from cancer patients combined with dozens of controls, +which perhaps includes samples of a related tissue such as lymph nodes.") + (license license:gpl3))) + (define-public r-copywriter (package (name "r-copywriter") From patchwork Mon Feb 27 10:28:47 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 47434 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 8A35816C29; Mon, 27 Feb 2023 10:31:16 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id CDB1716C2B for ; Mon, 27 Feb 2023 10:31:11 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pWam3-0006k3-4p; Mon, 27 Feb 2023 05:30:28 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWali-0006f3-Lc for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:12 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pWali-0008Ic-Bd for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:06 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pWali-0001Vn-47; Mon, 27 Feb 2023 05:30:06 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61838] [PATCH 10/13] gnu: Add r-conospanel. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 27 Feb 2023 10:30:06 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61838 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61838@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61838-submit@debbugs.gnu.org id=B61838.16774937725647 (code B ref 61838); Mon, 27 Feb 2023 10:30:06 +0000 Received: (at 61838) by debbugs.gnu.org; 27 Feb 2023 10:29:32 +0000 Received: from localhost ([127.0.0.1]:46126 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWal9-0001Su-Mi for submit@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:32 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:34303) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWakv-0001Qw-Eb for 61838@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:17 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1677493750; x=1679308151; bh=KGr12m3TDH6tJkS6CuTNiyjs2puWExaHVZOHkYY2jeU=; b=XxRIJ8PhS+Uj udutHASxT5EZg6jqIhOyuQny7BatyoTeVHNfSREFxppT+dAbZAQ/u8eeml9cpwa6 gsw/TAouVDbGXmpfP1n1FHsqmKCEYaandbVheOGJ7CdkBUCsIdm7rF2ZREDsSTaL fMgU7OB+tr4Vn4yxO2uQdms6AEq/VW0= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 3687D160177 for <61838@debbugs.gnu.org>; Mon, 27 Feb 2023 11:29:10 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 27 Feb 2023 11:29:02 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 27 Feb 2023 11:28:47 +0100 Message-ID: <20230227102850.18782-10-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> References: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-AS-Result: No-10--2.227400-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkECQG h5qJzqDbXt3JNptef3p4Zvg4N7yewiq+GZ9ZHxIhuW77/y896sj4qCLIu0mtIEJ1hMCC63pYfEz RZ8UqjkrF+KCpGE37CJsoi2XrUn/J8m+hzBStantdY+ZoWiLIm8K21zBg2KlffUeErNKFJifXll gPnrPEFUk+7eUYdAi4xSQgPBynPT4YwppSH36p/WB6EZq1e5bSnFHAMTiwqZmxLoAcNNTt9PdtO GZ647e3I8jLGKSl8/0oQg4MrLBPLqN8mCVfMdDqzFFXNLNe3bF/6uEw9r+ytQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.227400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-SNTS-SMTP: A48CE3B6B98585BFB66EFB1920EA9EBE8F1F84F34C90E3CD6BD180029EF544592002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-conospanel): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e810924766..fdbaf6ef56 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23591,6 +23591,28 @@ (define-public r-harmony function and interfaces to external frameworks.") (license license:gpl3))) +(define-public r-conospanel + (let ((commit "39e76b201a783b4e92fd615010a735a61746fbb9") + (revision "1")) + (package + (name "r-conospanel") + (version (git-version "1.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/kharchenkolab/conosPanel") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1zf0aj5d4iaxc3ghvjnaja5qby1avlmljzh94bpyvxbd359z9snn")))) + (properties `((upstream-name . "conosPanel"))) + (build-system r-build-system) + (home-page "https://github.com/kharchenkolab/conosPanel") + (synopsis "Package for conos data") + (description "Data used by conos") + (license license:gpl3)))) + (define-public r-covr (package (name "r-covr") From patchwork Mon Feb 27 10:28:48 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 47440 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id F224116C21; Mon, 27 Feb 2023 10:32:20 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id BD2F016C10 for ; Mon, 27 Feb 2023 10:32:18 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pWamX-0006wn-86; Mon, 27 Feb 2023 05:30:57 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWalj-0006f7-U0 for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:16 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pWalj-0008Ir-0q for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:07 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pWali-0001W6-SJ; Mon, 27 Feb 2023 05:30:06 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61838] [PATCH 11/13] gnu: Add r-p2data. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 27 Feb 2023 10:30:06 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61838 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61838@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61838-submit@debbugs.gnu.org id=B61838.16774937725661 (code B ref 61838); Mon, 27 Feb 2023 10:30:06 +0000 Received: (at 61838) by debbugs.gnu.org; 27 Feb 2023 10:29:32 +0000 Received: from localhost ([127.0.0.1]:46130 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWalA-0001T9-DP for submit@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:32 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:44911) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWakx-0001RA-C7 for 61838@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:19 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1677493753; x=1679308154; bh=8xXM0jUAaVqq6y3XpvZ7pKlHH0mxqnO8l4gEdWlTZN8=; b=hb+ozO2Q8itN LqUkkb4eXQ5E3yKzFcZH7WWV40M7gZ0BsCAi1G9kD5c822geBGlB2nPYiE29QXNL s+b07x8mZn9Md6RXYYq2LzZu7pP+0a7Tf/ypxxlAp274sexQkuOWMBw1urA5stLS 2PcTinvWdKmdzTDjtHnb6XFP3fQqaZI= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 51D8E160123 for <61838@debbugs.gnu.org>; Mon, 27 Feb 2023 11:29:13 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 27 Feb 2023 11:29:02 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 27 Feb 2023 11:28:48 +0100 Message-ID: <20230227102850.18782-11-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> References: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-AS-Result: No-10--3.729400-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEIyd mby1eQX7K1OIo1kOJjPuNT8xdcEnQwE+dA3RWUSvnVTWWiNp+v/F0kjYVlocofPlAor2K6GjlIO VA+gJRdLF+KCpGE37CJsoi2XrUn/J8m+hzBStantdY+ZoWiLIm8K21zBg2KlffUeErNKFJidiuO 4jBx75o/85ynzNCesbUWZmgzdmw8akDJtSc96JVwUZaKn8M/RxvQfHU4RCdixmfaUBIyfnEXdeM nJY1YF6CO7twKbP8XkoQg4MrLBPLqN8mCVfMdDqzFFXNLNe3bF/6uEw9r+ytQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.729400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-SNTS-SMTP: AD51C5C13A7C3989D1FB59EAAD9DB0AE142674BEA3C857251EE3D05D76F80DC82002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-p2data): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index fdbaf6ef56..517db893cd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -33149,6 +33149,28 @@ (define-public r-seuratdata distributed as independent packages.") (license license:gpl3)))) +(define-public r-p2data + (let ((commit "7d4c0e17d7899f9d9b08ab2bf455abe150912f4c") + (revision "1")) + (package + (name "r-p2data") + (version (git-version "1.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/kharchenkolab/p2data") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1hadrldldxvhqs43aqs3c88bqfgql3wcfkbll3jz7fh6z7p3x324")))) + (properties `((upstream-name . "p2data"))) + (build-system r-build-system) + (home-page "https://github.com/kharchenkolab/p2data") + (synopsis "Data for pagoda2") + (description "This package contains data used by pagoda2.") + (license license:gpl3)))) + (define-public r-phangorn (package (name "r-phangorn") From patchwork Mon Feb 27 10:28:49 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 47431 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 3281216C21; Mon, 27 Feb 2023 10:30:35 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id C044D16C10 for ; Mon, 27 Feb 2023 10:30:33 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pWam6-0006lI-Vp; Mon, 27 Feb 2023 05:30:31 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWalj-0006fA-VT for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:16 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pWalj-0008J2-DB for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:07 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pWalj-0001WE-8Y; Mon, 27 Feb 2023 05:30:07 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61838] [PATCH 12/13] gnu: Add r-pma. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 27 Feb 2023 10:30:07 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61838 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61838@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61838-submit@debbugs.gnu.org id=B61838.16774937735668 (code B ref 61838); Mon, 27 Feb 2023 10:30:07 +0000 Received: (at 61838) by debbugs.gnu.org; 27 Feb 2023 10:29:33 +0000 Received: from localhost ([127.0.0.1]:46132 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWalA-0001TG-Ot for submit@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:33 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:40135) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWaky-0001RD-3o for 61838@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:20 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1677493754; x=1679308155; bh=K1yLYEl8ka9VMlnn37CBL+9lR9WVVIDSZNZdpZEyGJo=; b=GiYky8YE9sXs iiy6ox8E5UqWGLgsBvskIOpT4uDaCK0k43tBLnq0En1Q42T+EcPGRw/lP4pLyLIL 4bV4uyeGn8JfBmisLmUQNeRfedowyeLeyyUKBit7HAIUDnpNEvfk7AYAetkTJ3bC T8f7A1T0smmsfO/J9OAOzX8kJx1XQ00= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 0AD3516014E for <61838@debbugs.gnu.org>; Mon, 27 Feb 2023 11:29:14 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 27 Feb 2023 11:29:02 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 27 Feb 2023 11:28:49 +0100 Message-ID: <20230227102850.18782-12-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> References: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-AS-Result: No-10--4.686400-5.000000 X-TMASE-MatchedRID: 54gb2yeIOXT/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEBKT GNKPwaynM9YQpZ+69TnoE3TAn9uEtiq+GZ9ZHxIhuW77/y896siFzNNPDc6umOCbuVI7hVbL1xv NmiS10Z7CHNu/5KBL8xJTjjs9yT6Yo8WMkQWv6iV3LAytsQR4e42j49Ftap9Eymsk/wUE4houm2 Z3hsbYctMPjmay26CM3DvnY7dvJgEEkqEwCdSIKN/+FIbaFInTTc0iNdCWjcbM6vsSREdDjLaNn W8IcGWlgnm7ZAxJyw+717qbAvfhL7TnVnv1JP77sGTvZJmllrz/PhPL0kApH8kjm+elEcbI X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.686400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-SNTS-SMTP: 781686D0980171CD748622235F8065E1C935D0C31068D1FFF5D191E775188B892002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-pma): New variable. --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 517db893cd..61dcff7f12 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -905,6 +905,26 @@ (define-public r-googlesheets4 can read and write both the metadata and the cell data in a Sheet.") (license license:expat))) +(define-public r-pma + (package + (name "r-pma") + (version "1.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "PMA" version)) + (sha256 + (base32 "1rhiylm3jfarnqdkv7nwg536sgsa30ic80dk9byks9w0wf4mn59s")))) + (properties `((upstream-name . "PMA"))) + (build-system r-build-system) + (home-page "https://github.com/bnaras/PMA") + (synopsis "Penalized multivariate analysis") + (description + "This package performs penalized multivariate analysis: a penalized matrix +decomposition, sparse principal components analysis, and sparse canonical +correlation analysis.") + (license license:gpl2+))) + (define-public r-proj4 (package (name "r-proj4") From patchwork Mon Feb 27 10:28:50 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 47438 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 9B63716C21; Mon, 27 Feb 2023 10:32:00 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 06A4616C10 for ; Mon, 27 Feb 2023 10:31:59 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pWam7-0006mK-IT; Mon, 27 Feb 2023 05:30:31 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWalk-0006fF-2U for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:16 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pWalj-0008JA-OZ for guix-patches@gnu.org; Mon, 27 Feb 2023 05:30:07 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pWalj-0001WM-L8; Mon, 27 Feb 2023 05:30:07 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61838] [PATCH 13/13] gnu: Add r-rmumps. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 27 Feb 2023 10:30:07 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61838 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61838@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61838-submit@debbugs.gnu.org id=B61838.16774937735675 (code B ref 61838); Mon, 27 Feb 2023 10:30:07 +0000 Received: (at 61838) by debbugs.gnu.org; 27 Feb 2023 10:29:33 +0000 Received: from localhost ([127.0.0.1]:46134 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWalB-0001TN-3I for submit@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:33 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:34733) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWakz-0001RF-CN for 61838@debbugs.gnu.org; Mon, 27 Feb 2023 05:29:21 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1677493754; x=1679308155; bh=5V6NHzRmL9zvIfc095tS8FQm9EGZPQEmzXf59/Cs9II=; b=UiR3AquHDDIC TdM6hnmZdnYVG4JfSqAvBsL0Y5EQrNXY8Y8M5EIwyRyCoyc/BUvt5I7j2ws/cLah 8VTTs9IDtaIGdGJsBm8sVZgs2MMpl28wKLJhG6mwz46tdHicXRACwZl05KUQUin6 0nzgRNiansf/a3i7LAsuFt4yr+pTrBs= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id BB5A8160157 for <61838@debbugs.gnu.org>; Mon, 27 Feb 2023 11:29:14 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Mon, 27 Feb 2023 11:29:02 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 27 Feb 2023 11:28:50 +0100 Message-ID: <20230227102850.18782-13-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> References: <20230227102850.18782-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-AS-Result: No-10-0.392800-5.000000 X-TMASE-MatchedRID: GQw6Xh/XS6X/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEIsD mFQEq0bLRRa406V/YwyBUGewL2YXt8Z8zsjIitoJ71Wx2uUbPLfExmr5hqNL1jhndY84+Wc88Ez rj89e7mv25soaHGUfxlhuYD6rxoXGdYlaOEy4HBwvWfLf9uv1HJnaxzJFBx6vLX3qyf3ewG/KSK DFk38hb8X4oKkYTfsImyiLZetSf8lBgw5G4NYCZN9pjzubZ2rHwrbXMGDYqV+eVW/ZdL52jxA+/ 9WAFpucmjGLhEDft4vdntt0YoLWLlzFjF9gvVDxLk9sHY7/y22fohQiiN3/YQXQlX1+WHD3tq15 yEbuUuK3BTY3y8sepShCDgyssE8uo3yYJV8x0OrMUVc0s17dsX/q4TD2v7K1 X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-0.392800-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27472.006 X-TM-SNTS-SMTP: 28E3F89FB84C2836A6FB7BE66828F6CB16806976B86D3FA0ECB4FB72B683C10D2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-rmumps): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 61dcff7f12..11939ee20f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5866,6 +5866,32 @@ (define-public r-rmpi provides an interactive R manager and worker environment.") (license license:gpl2+))) +(define-public r-rmumps + (package + (name "r-rmumps") + (version "5.2.1-22") + (source + (origin + (method url-fetch) + (uri (cran-uri "rmumps" version)) + (sha256 + (base32 "18wqy82hwnbiwqcyldg8ci0jmxfiaj65ila0fjzzv40d3kl8hx76")))) + (properties `((upstream-name . "rmumps"))) + (build-system r-build-system) + (inputs (list zlib)) + (propagated-inputs (list r-rcpp)) + (native-inputs (list gfortran)) + (home-page "http://www.mumps-solver.org/") + (synopsis "Wrapper for MUMPS library") + (description + "Some basic features of @acronym{MUMPS, Multifrontal Massively Parallel sparse +direct Solver} are wrapped in a class whose methods can be used for sequentially +solving a sparse linear system (symmetric or not) with one or many right hand +sides (dense or sparse). There is a possibility to do separately symbolic +analysis, LU (or LDL^t) factorization and system solving. Third part ordering +libraries are included and can be used: PORD', METIS', SCOTCH'.") + (license license:gpl2+))) + (define-public r-lmoments (package (name "r-lmoments")