From patchwork Mon Feb 20 18:53:48 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47151 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 9758416A98; Mon, 20 Feb 2023 19:11:43 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id ACEC916A3C for ; Mon, 20 Feb 2023 19:11:42 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZ2-0007TC-NP; Mon, 20 Feb 2023 14:11:04 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ0-0007SA-Vb for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ0-0001n7-L7 for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ0-0002tx-GW for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 01/24] gnu: r-cytolib: Update to 2.10.1. References: <20230220155951.240333-1-zimon.toutoune@gmail.com> In-Reply-To: <20230220155951.240333-1-zimon.toutoune@gmail.com> Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692021610938 (code B ref 61656); Mon, 20 Feb 2023 19:11:02 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:16 +0000 Received: from localhost ([127.0.0.1]:53602 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYE-0002qF-1p for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:16 -0500 Received: from mail-wr1-f49.google.com ([209.85.221.49]:33789) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJL-0002P5-93 for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:53 -0500 Received: by mail-wr1-f49.google.com with SMTP id bo30so1642999wrb.0 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:51 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=content-transfer-encoding:mime-version:message-id:date:subject:cc :to:from:from:to:cc:subject:date:message-id:reply-to; bh=rhrpM0Rzb+Go0iQGwrVVCf3dHWQZ/RQw1hvgq0E6pjg=; b=CTyvtwpMdqGl/2+zq5WwDb1f0wVRq+RiP7PIjWqrey4+BYMrlc8BZHxyuERo8OIpYD Z3SFHFqdTQfA+Fo+17P7rgG+YTMazM6mgFGiRtDB0S11hhVx6WSWgIz/A7oup5OsUtuH 2c8bxiPolNo1zO9R6LPIHsEsng2gb5ZGuMeGObNWCQzA75WPeJUrgv87zUV2nfFBBikX K5IKXcddmsxCVEHOuqrT9bEQjS9tpjrcntN0dgt9XNNkIM/i7fQ0pSdqdNaixfoQb3x/ kN1x9i5NJujwgnJzqr5xjnK9i83pbt6GQP6C/oXlO//rtTbEaC99awpmXWk/RP2sfftu nrQw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=content-transfer-encoding:mime-version:message-id:date:subject:cc :to:from:x-gm-message-state:from:to:cc:subject:date:message-id :reply-to; bh=rhrpM0Rzb+Go0iQGwrVVCf3dHWQZ/RQw1hvgq0E6pjg=; b=WwQJziiWraJoUDMrpM3Jo8wCAaXKEVzztJVjwpb4ldssnI7mvrQ4v30bCZB7dm1I1k t8NpHKVfb6ltFqLOuRwtYEnD/wme11TyRN5bDJyprsKviTXzhrHeSlnQEIguFhzh1STg xlpfbbVrBLcwjNcRa8Ek68UkpS81j4/j/iWSDrwn4kF1ODRyePF8q9Sqsr/FeJJRkh7p iMNJlxqVN3yaPettNC2Svq++4xkwW22+VQzAmRkGVm5naozn4tWcgfVlK8l6K6dhbKC1 WyL6i90o1UZFQjzhtJ08+9OVbEoQ+N/Yn/cyH2DQi44KaP6HhUIHEkPEoLUCj0madStC 9ZSQ== X-Gm-Message-State: AO0yUKWpaOCXJt1Mdp5K37c0eTtlgEqEnjXfBJPpSUED+jdlAfLc1t2G PrsVR6jwgQDipB0KsT65niqjajq7iGQ= X-Google-Smtp-Source: AK7set/Ai1mbCOuIDDT+d3Q0Ou1rSFSZhqXA+/vNnsqR2aRS2ZEJuvLyZgUWnCmyGuoKmAPY8SfUzA== X-Received: by 2002:adf:e682:0:b0:2c5:4e28:e33c with SMTP id r2-20020adfe682000000b002c54e28e33cmr1361840wrm.2.1676919285083; Mon, 20 Feb 2023 10:54:45 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.44 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:44 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:53:48 +0100 Message-Id: <20230220185411.377212-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-cytolib): Update to 2.10.1. [propagated-inputs]: Remove r-rcpp, r-rcpparmadillo and r-rcppparallel. --- gnu/packages/bioconductor.scm | 7 ++----- 1 file changed, 2 insertions(+), 5 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 4b5ec7db28..9b1235ab79 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13952,23 +13952,20 @@ (define-public r-cycombine (define-public r-cytolib (package (name "r-cytolib") - (version "2.10.0") + (version "2.10.1") (source (origin (method url-fetch) (uri (bioconductor-uri "cytolib" version)) (sha256 (base32 - "1y06x7z3p938kfvjx6zqab9hh1xzlrlhdxczyprx7lsd34ylz46n")))) + "0rgqlqasil75b03c8c4nyg71ybysrsbqb0bwk6hbnaw8rljxdmi5")))) (properties `((upstream-name . "cytolib"))) (build-system r-build-system) (native-inputs (list r-knitr)) (propagated-inputs (list r-bh - r-rcpp - r-rcpparmadillo - r-rcppparallel r-rhdf5lib r-rprotobuflib)) (home-page "https://bioconductor.org/packages/cytolib/") From patchwork Mon Feb 20 18:53:49 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47155 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id BDCC516A9F; Mon, 20 Feb 2023 19:11:54 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 3C35D16A3C for ; Mon, 20 Feb 2023 19:11:54 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZ2-0007T2-L4; Mon, 20 Feb 2023 14:11:04 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ0-0007Rz-Np for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ0-0001n0-9n for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ0-0002tp-58 for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 02/24] gnu: r-annotationforge: Update to 1.40.1. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692021410925 (code B ref 61656); Mon, 20 Feb 2023 19:11:02 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:14 +0000 Received: from localhost ([127.0.0.1]:53600 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYC-0002q7-7Q for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:13 -0500 Received: from mail-wr1-f51.google.com ([209.85.221.51]:44978) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJL-0002P6-8u for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:52 -0500 Received: by mail-wr1-f51.google.com with SMTP id 6so1798317wrb.11 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:51 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; t=1676919285; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=p0u7RqvqcA2C6wlmcy88zxJjkDppHiSXUGS3p7Jr6Uc=; b=mUyxJAUQghsmhrb3yBTx0sCwubaNm0vHE0ZWbee1v7QXAf/XUFWSVXipzYUhWVzsLg 4IhntHlJFcqPzOH25yFhX3p2EHe2jaZksQddWMc2dS6c1ApKXrwXv8Ln2r/iEHy9Rj6p zQcUB0nQ3tL0Ov+goEDX4E7WLcon/ukf1LZaVWBnuQNiSqCAJNddat1G3Ita7lI5wxXJ eW9rddo8uH00NiGk3zjAvBKZcGSPYaNeF6nRUsFxky/jkgMNC8B6+s/N/4YKs35dieRY l4u/5JvaeoN482uINZCB1WPIcAhQESAgh+iZwiZVnMW075Vlb4KwWJcO09iRhfMRWywg f2Jw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; t=1676919285; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=p0u7RqvqcA2C6wlmcy88zxJjkDppHiSXUGS3p7Jr6Uc=; b=j/seJGj97emOyv66zpDKB1wUuko2NSItLakq0wgze5a9UZoDFsrc31Tr7xQ+Yap1bX aOFcBIW1PlA31GUiftBuudeEyZ34RFIc0u5hC7S3IXr2FFrmqot9Um7x0QmuyLLLDWFs wf4Rvj5cBnuee5B6M4OEBA9AgHkmm8naLTccsvRxjnTaJdOC/LDrGCCkOrvza4fbwAR6 AiQQSx96AyvWJbfyuZtIP5fpzAyJdTpOvR3d/1cIgMujR2TP94kgyb2/kLcYyWSr9yMZ t1Fu1+DA2P5Gvc4csiHg8SGNqaaPaO4c5mdNb61R3E7rtmrQM+E4WaDcPT2Lr1ZbnaWu qMHg== X-Gm-Message-State: AO0yUKVgNI5Hpzcu8m0y+z+/oXg/dIY/B/jXp4tyAX6CrMP0KUsSV0kt WwbsMTGEmX3egS5v/GMA6htFbexSa6w= X-Google-Smtp-Source: AK7set+Qt9HapoBMsxGyZ1q9PXj9Ndl5T+Ln7RI+n/OANEOWDQHsQE58yKKxVU3LdS4lZLmSifqIkQ== X-Received: by 2002:a5d:4cc1:0:b0:2c5:598a:dd0b with SMTP id c1-20020a5d4cc1000000b002c5598add0bmr1253006wrt.2.1676919285497; Mon, 20 Feb 2023 10:54:45 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.45 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:45 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:53:49 +0100 Message-Id: <20230220185411.377212-2-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.40.1. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 9b1235ab79..aff6cf00dd 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5054,14 +5054,14 @@ (define-public r-annotationfilter (define-public r-annotationforge (package (name "r-annotationforge") - (version "1.40.0") + (version "1.40.1") (source (origin (method url-fetch) (uri (bioconductor-uri "AnnotationForge" version)) (sha256 (base32 - "15shh8rmcx69g3zd256720vh0c3qbly5zrvwm463dws41cjla48x")))) + "16wdcl56d5i8wrmin610kzs9ldy7h9w5fbnysjb1crkcgbikq1yy")))) (properties `((upstream-name . "AnnotationForge"))) (build-system r-build-system) From patchwork Mon Feb 20 18:53:50 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47166 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 591D916A9E; Mon, 20 Feb 2023 19:12:54 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 3806A16A9F for ; Mon, 20 Feb 2023 19:12:53 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZ5-0007Vk-4I; Mon, 20 Feb 2023 14:11:07 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ3-0007UK-9h for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:05 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ3-0001no-1D for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:05 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ2-0002uh-SN for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:04 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 03/24] gnu: r-bsgenome: Update to 1.66.3. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022110986 (code B ref 61656); Mon, 20 Feb 2023 19:11:04 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:21 +0000 Received: from localhost ([127.0.0.1]:53614 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYK-0002r2-Qm for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:21 -0500 Received: from mail-wr1-f45.google.com ([209.85.221.45]:42828) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJL-0002P7-Ha for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:54 -0500 Received: by mail-wr1-f45.google.com with SMTP id j2so2025155wrh.9 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:51 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=42mus3VtmOtnjhhZXgMeTvd7pagpj+PxgcC8qIxrQto=; b=Xo7xzCVIxPkPXGTsyj6AYM69QwYCYAlVoMwX01wUJSkXk8qyiHeOgMx/O7j/00Noyx q/JDP0o+QE4v1JCbQY+vcr9r0xfMSWHD+Ofw5407rR6aG87TJCAfHt53jPc7wjH6vSCI ca0PML9pm2db9NeNf2bDzfB6KOspvp/v9WjLbxMMvThrmT8qLQbM6mNRGA6ObCq6FWck dWUB8qFMb5NNh8fdf+zd+slmWY7efYgO65eP8uGoE9PEUkbJl10MHApJW9d8qxTPvDtF qlD4b/jaUjFeZ2suzQ9KBIlCWTc5UbiPDLNs86EAlEFK2DZwf5z642kWV9zHNBgjdrOh MP7A== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=42mus3VtmOtnjhhZXgMeTvd7pagpj+PxgcC8qIxrQto=; b=HGdGjJugqm95tvh0qflvc/8b8k+rqJj3HuQ5JJgpiJ8xFQC54o7GDBKHqsasvBqCPk gZh0wTInI5rmXeiXPTm+86am3pACx3IrNqBfs53vdxo3p7/zbXixNyCEwdrKd+D2493K uxIg22vKoNi6IgsQ4omH1SSS4BtuephW7Vc3S6KxkNMjqBzH2Hf0IZOXNDuauco3a//w aF8d/1niXwBYipir++6/7NxmhljZ3pqAofRodkdmdqHpqp2RLxSthIjYV6yaCH1JjFOg y+cM7vWxjacNAvL3s4J02XcPY/ansaLKoT8DIvDzW9sKqLDh1P2GmNDJMTgxMA9XwZA4 tZaQ== X-Gm-Message-State: AO0yUKXTEnG/ALoFddGvnxiV2GgM/YGFtcqvlRNqKi7IHHJdpJ6aP0rr QKVAIpDQ42OFQa6UCijc+KU+IZSzs+M= X-Google-Smtp-Source: AK7set+CxsO7R5sFiEzVYs6P82dSJSr5gKPu9SdhavnOtM0tacuIchYSXY1hyws3CsviLO4vMqNtXg== X-Received: by 2002:a5d:610f:0:b0:2c6:e6a2:7900 with SMTP id v15-20020a5d610f000000b002c6e6a27900mr1723810wrt.5.1676919285906; Mon, 20 Feb 2023 10:54:45 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.45 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:45 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:53:50 +0100 Message-Id: <20230220185411.377212-3-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.66.3. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index aff6cf00dd..3828b7ba4c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5409,13 +5409,13 @@ (define-public r-biovizbase (define-public r-bsgenome (package (name "r-bsgenome") - (version "1.66.2") + (version "1.66.3") (source (origin (method url-fetch) (uri (bioconductor-uri "BSgenome" version)) (sha256 (base32 - "0p75c52sw464bdqz7dyda9h8k2wsxdpdxxhya5awh977xaly90pf")))) + "1ps7s6i9mv8ys8k2xw8fdkh2rl2n3kcf2q4zsz6kcz5qpav95ys6")))) (properties `((upstream-name . "BSgenome"))) (build-system r-build-system) From patchwork Mon Feb 20 18:53:51 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47156 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id E81BE16A9F; Mon, 20 Feb 2023 19:11:56 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 6825816A3C for ; Mon, 20 Feb 2023 19:11:56 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZ4-0007V6-H9; Mon, 20 Feb 2023 14:11:06 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ2-0007Tb-S4 for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:04 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ2-0001ng-Jc for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:04 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ2-0002uY-Ft for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:04 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 04/24] gnu: r-deseq2: Update to 1.38.3. 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"DESeq2"))) (build-system r-build-system) (propagated-inputs From patchwork Mon Feb 20 18:53:52 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47161 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 9835D16A9F; Mon, 20 Feb 2023 19:12:25 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 5262216A3C for ; Mon, 20 Feb 2023 19:12:24 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZ3-0007UO-Fj; Mon, 20 Feb 2023 14:11:05 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ2-0007Sv-Hf for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:04 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ2-0001nY-8l for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:04 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ2-0002uR-4s for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:04 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 05/24] gnu: r-edger: Update to 3.40.2. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022010972 (code B ref 61656); Mon, 20 Feb 2023 19:11:04 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:20 +0000 Received: from localhost ([127.0.0.1]:53610 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYK-0002qo-4T for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:20 -0500 Received: from mail-wr1-f52.google.com ([209.85.221.52]:38769) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJM-0002PB-7h for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:54 -0500 Received: by mail-wr1-f52.google.com with SMTP id c5so2891458wrr.5 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:52 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; t=1676919286; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=uqhP3sXqTkh5LEL5nOYBFf0fq/tnjeHCVYnkDDvB6V0=; b=JBmdYm4irElquaOlLq6w8ZDhfbhvd1Jg2rKGrZlfgXkJMfni3qZE7wcX70/oDHKAVT otmk3giLRt7zlZZ7sbJzyvYV6dVGzk//hZcbjt4flJMcVD33lMT8rtCX4wcp7816lDG7 lIwZMorEVyuPf7DnKXwVWjVM1m+B5AZ/2J1NdMP2AH2kfT0qwevEWI3FaJbpa2j3ROYK h+qRSY7pyX50A2sMhxKRHLPcRpuqRS3e1rsIrdABk4g0S9Gc5QTA7CgUs9KYqaBV/fU5 RWaj5Wt/vuhGXcB8yEOXdgkk8n62ovNZ45wG/+inv77VxzV74StOkFng0qCmjrYwWotQ KTxw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; t=1676919286; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=uqhP3sXqTkh5LEL5nOYBFf0fq/tnjeHCVYnkDDvB6V0=; b=1X+CvPfGzDhRVBV2cBKFHPM+eWQuWM9lOElunoxz35waKLzGgDe4LL+/HCuDq0X3l1 xHVFmXfls7Z7Bew+i3TT7s3WmhfBFxwxZrJZtoy9gG4kPOv9ypdGkTUiZwT1rpzLqGhD 2QSVS/iEEf0an98fdDN/suKwq9dtBWZ/p3Hw+MfKue7JDEQr2eIkrbzgFNOkkd7J9Vru C/1eFC5NUReQu5PCI1CsZ2K8oxSYmDp4Q3RLpfODOTJzGqCtS4hQaTec3LTe2t2/QOPT IhqxRyEBBlUl7P2xKTMtrkBirUxs2xVkzv95VnESQAWJGrsbKVcxG4aLSoK4cHP9OXut nXVQ== X-Gm-Message-State: AO0yUKX1tMDmzy+1ivts9yo5YvDfA1eyqjLmsyzUfImA0fq8S2kx6FTP pBpT3kdpeNYfwxVhSGPvLsrzUS/Wiks= X-Google-Smtp-Source: AK7set8q0IC6RrKD5YxIxnpc5MvE6R7gCoFAYq87386VDP5yurW/jDpXXCz2YxVs8kxCaHuRtxCOPg== X-Received: by 2002:adf:fd03:0:b0:2c5:8b8d:e5df with SMTP id e3-20020adffd03000000b002c58b8de5dfmr1554160wrr.1.1676919286737; Mon, 20 Feb 2023 10:54:46 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.46 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:46 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:53:52 +0100 Message-Id: <20230220185411.377212-5-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-edger): Update to 3.40.2. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e2b8e689b8..66d389e778 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5887,13 +5887,13 @@ (define-public r-edaseq (define-public r-edger (package (name "r-edger") - (version "3.40.1") + (version "3.40.2") (source (origin (method url-fetch) (uri (bioconductor-uri "edgeR" version)) (sha256 (base32 - "1a0rmczlqmqmip2ix28m4iwcpfj04p6nrcl562bjgaifvgyjqhzg")))) + "0ds34b135qd63dh3cxkp8b28270m50bn1njwr49b8svgcgzz9x09")))) (properties `((upstream-name . "edgeR"))) (build-system r-build-system) (propagated-inputs From patchwork Mon Feb 20 18:53:53 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47152 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 637B416A9F; Mon, 20 Feb 2023 19:11:48 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id DDEEE16A3C for ; Mon, 20 Feb 2023 19:11:47 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZ3-0007UG-7t; Mon, 20 Feb 2023 14:11:05 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ2-0007SM-4H for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:04 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ1-0001nD-DZ for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ0-0002u4-U4 for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 06/24] gnu: r-genefilter: Update to 1.80.3. 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Mon, 20 Feb 2023 10:54:47 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.46 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:46 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:53:53 +0100 Message-Id: <20230220185411.377212-6-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-genefilter): Update to 1.80.3. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 66d389e778..18b6eccf31 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6012,14 +6012,14 @@ (define-public r-gage (define-public r-genefilter (package (name "r-genefilter") - (version "1.80.2") + (version "1.80.3") (source (origin (method url-fetch) (uri (bioconductor-uri "genefilter" version)) (sha256 (base32 - "0f25z0hqmrkimv14j03pgjsxpq5rz9ymk151rlg4j4vpc06n73cq")))) + "047p84qxfqqm0d0ik7fxcs37fmg0yazsn9rz7h4g24cksb45p689")))) (build-system r-build-system) (native-inputs (list gfortran r-knitr)) From patchwork Mon Feb 20 18:53:54 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47165 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 840E816AE9; Mon, 20 Feb 2023 19:12:53 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 04D6B16A3C for ; Mon, 20 Feb 2023 19:12:53 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZO-0007h3-8l; Mon, 20 Feb 2023 14:11:26 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ3-0007UX-Oc for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:05 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ3-0001nx-Fb for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:05 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ3-0002uo-BB for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:05 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 07/24] gnu: r-genomeinfodb: Update to 1.34.9. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022110994 (code B ref 61656); Mon, 20 Feb 2023 19:11:05 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:21 +0000 Received: from localhost ([127.0.0.1]:53616 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYL-0002r9-3Y for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:21 -0500 Received: from mail-wr1-f46.google.com ([209.85.221.46]:34311) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJN-0002PE-A5 for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:54 -0500 Received: by mail-wr1-f46.google.com with SMTP id c12so2203851wrw.1 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:53 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; t=1676919287; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=iFeNOJGVWUoKo9CK5Y+okPtJYb4PNLjXZJCVvuBoMuo=; b=eI+GAC2MI3F6qAJkseKuaAZfDCCAtt4q8oeyl7GFlLo7mULWYU/1lTTzlj/iDT1LoR DoQSWtJakkONWAds7Xv+4wdm4YDpjtuZVHHeyxHTiB5RNuHoDj1kzgBgZzQmUPEp/19v 9RnwXKzWZTwpBt3HEIJfgWGAkstrhDECom15ZmrtfQp0snx/0KT/S1MVD6mqU4k9YA/t 34fHJE2FMVUXcjpggc2sO/cRNIN1LSP1cMwIoqu+IaV6QXjGSHidAdtSsPEBevLOc05o Rfn3g5BECHqv2oynl0J11MRJMzxMMvP0I8EYqa2L+jfG6rjaGeaGSyLrPQ4YUHZ+Gy0z j7rw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; t=1676919287; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=iFeNOJGVWUoKo9CK5Y+okPtJYb4PNLjXZJCVvuBoMuo=; b=KmYvFS6oi5yX1TVrpZRbB6GlZG2zJLT3JYgY4wBHeY+QawWTZBtU1y0czH9JQGjjBq R836KgXSRiQTWdIXXZqIV6BohM5i41ma87bS4px7RKWCv7VUWRZ0unhk6+KT3tm27F9H lJ6GwheILaxIgSw/d+H4+8E5Y9+uZ/QmE0/WxY8vR83qOQAkoDBe375BC+5oSmlXq5sR owdt2TTVU5BWG+b8WPctQTsUKqWLJ8t2am+qT7CkTh4hYQ1zxHxfbNZUpdgwKBbKFh+C ta9CIkEXhKodiFgHokncCC3VkE88Oh/vsvvlQEaiqpZ2eXropnhsNMG0x0Lxq6eUhO2I p+mg== X-Gm-Message-State: AO0yUKWnfqqcF0tueq8/pyaX3+vfbHjUTHrBKTs1QKkgLE0tFaqLwW7L Ih+5o3J7zi9FEnd+TcfHPEjWd//WKGM= X-Google-Smtp-Source: AK7set+lfqb/+ATukvpSPyBuhV436/34yWuyEn6Y59gO0HWsolsXdwqwnbBUMLBm16bjEea8nrSUdA== X-Received: by 2002:a5d:5947:0:b0:2c6:75be:f2de with SMTP id e7-20020a5d5947000000b002c675bef2demr1463714wri.4.1676919287697; Mon, 20 Feb 2023 10:54:47 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.47 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:47 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:53:54 +0100 Message-Id: <20230220185411.377212-7-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.34.9. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 18b6eccf31..f00d57112a 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6102,13 +6102,13 @@ (define-public r-genomation (define-public r-genomeinfodb (package (name "r-genomeinfodb") - (version "1.34.6") + (version "1.34.9") (source (origin (method url-fetch) (uri (bioconductor-uri "GenomeInfoDb" version)) (sha256 (base32 - "123kp69fmy5pbqh0j6qxdkvkm4g9pdwzms01i8qnix3m1b9j597w")))) + "0mn9ddm2xwc2b7zg0n9a056jcr61jv6v8jacxm3q8qmz6r30kfrb")))) (properties `((upstream-name . "GenomeInfoDb"))) (build-system r-build-system) From patchwork Mon Feb 20 18:53:55 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47154 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 6F09116A98; Mon, 20 Feb 2023 19:11:52 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 8574E16A3C for ; Mon, 20 Feb 2023 19:11:50 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZ2-0007Te-UV; Mon, 20 Feb 2023 14:11:04 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ2-0007SQ-55 for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:04 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ1-0001nF-Rv for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ1-0002uB-BQ for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:03 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 08/24] gnu: r-genomicfeatures: Update to 1.50.4. 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"GenomicFeatures"))) (build-system r-build-system) From patchwork Mon Feb 20 18:53:56 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47160 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id D5A1616A9F; Mon, 20 Feb 2023 19:12:13 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id F1AA616A3C for ; Mon, 20 Feb 2023 19:12:11 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZM-0007e1-Hb; Mon, 20 Feb 2023 14:11:24 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZA-0007YY-6A for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:13 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ8-0001rr-9K for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:11 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ8-0002wE-4q for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:10 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 09/24] gnu: r-impute: Update to 1.72.3. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:10 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022511083 (code B ref 61656); Mon, 20 Feb 2023 19:11:10 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:25 +0000 Received: from localhost ([127.0.0.1]:53640 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYP-0002sb-5k for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:25 -0500 Received: from mail-wr1-f47.google.com ([209.85.221.47]:40938) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJO-0002PG-69 for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:59 -0500 Received: by mail-wr1-f47.google.com with SMTP id t15so2306729wrz.7 for <61656@debbugs.gnu.org>; 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Mon, 20 Feb 2023 10:54:48 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.48 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:48 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:53:56 +0100 Message-Id: <20230220185411.377212-9-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-impute): Update to 1.72.3. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fbd0f3bcc1..4c1a58abe2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6427,13 +6427,13 @@ (define-public r-rhtslib (define-public r-impute (package (name "r-impute") - (version "1.72.2") + (version "1.72.3") (source (origin (method url-fetch) (uri (bioconductor-uri "impute" version)) (sha256 (base32 - "1k697pqlkrwmfszipl9irbzmwhk1vz97j3rh0k5nj2mrj3dr71mv")))) + "1qq80za9bkg0wqnlckvahnjz08xacwvpnflwnrmwr2xg0ifkis38")))) (native-inputs (list gfortran)) (build-system r-build-system) From patchwork Mon Feb 20 18:53:57 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47148 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 722F416A9F; Mon, 20 Feb 2023 19:11:18 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id BF0E516A96 for ; Mon, 20 Feb 2023 19:11:17 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZ7-0007XY-SH; Mon, 20 Feb 2023 14:11:09 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ5-0007Wa-FJ for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:07 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ5-0001oY-6K for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:07 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ4-0002vH-Qr for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:06 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 10/24] gnu: r-limma: Update to 3.54.1. 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Mon, 20 Feb 2023 10:54:48 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.48 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:48 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:53:57 +0100 Message-Id: <20230220185411.377212-10-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-limma): Update to 3.54.1. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 4c1a58abe2..20a46feceb 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6517,13 +6517,13 @@ (define-public r-lfa (define-public r-limma (package (name "r-limma") - (version "3.54.0") + (version "3.54.1") (source (origin (method url-fetch) (uri (bioconductor-uri "limma" version)) (sha256 (base32 - "1jy75nbkhl0kgv4gw88acx58r9f1kywrd36405x6g05xy05bprma")))) + "0x6wkbw8v0hq9dfr433165jmii05rswjsm97dpxvyvxvya3sxqa1")))) (build-system r-build-system) (home-page "http://bioinf.wehi.edu.au/limma") (synopsis "Package for linear models for microarray and RNA-seq data") From patchwork Mon Feb 20 18:53:58 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47159 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id DE7D316AA1; Mon, 20 Feb 2023 19:12:11 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 289AC16A3C for ; Mon, 20 Feb 2023 19:12:11 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZI-0007bL-26; Mon, 20 Feb 2023 14:11:20 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ4-0007Ut-5y for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:06 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ3-0001o4-Ta for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:05 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ3-0002uv-On for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:05 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 11/24] gnu: r-stringdb: Update to 2.10.1. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022111001 (code B ref 61656); Mon, 20 Feb 2023 19:11:05 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:21 +0000 Received: from localhost ([127.0.0.1]:53618 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYL-0002rH-Ca for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:21 -0500 Received: from mail-wr1-f46.google.com ([209.85.221.46]:38769) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJP-0002PJ-1S for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:55 -0500 Received: by mail-wr1-f46.google.com with SMTP id c5so2891565wrr.5 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:54 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=pxXCicHIf5/GhWwRH+Opt3rt/+aRCRiuIPdtEss6gn0=; b=JrbEZZzLaQNczjGAF1j2ald3vFrqtPq72rlRGZsAWs0mFyLebJZZQW9l/5lgXZtKBC ZBTjnLsUZ9LuwA7UB8GHTwusS627Ou8C/H3ndXsho7pFlb9/l4IDz95+KvMhvAyqBV0D vyYUwvbW/Pmo2s/+cMRNOezyxpKV0fXz4J6klu03NR3lnDQv9Wrl50GIxRgQ2dxfUkjW SUPmJnEsmCatIF6MznQFCqFeW6HUIXOy6v8Rch2GYfu0YfEcbhPFMFWq0VL66QVSiiRN ZgBsWEN8+yd3mfY41SI4LaUpRqDWxRJuxq5DHVas1U152cO05T498/TxVeoG+a4kzbhi QxzA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=pxXCicHIf5/GhWwRH+Opt3rt/+aRCRiuIPdtEss6gn0=; b=yz3n+8qAZREII1ZAfhneUEfja5p1vdhJYjukfOA8sle+fdKVPqjWRnyBh9gatPiUw3 yP3a1b2VjFvGnI/afoiuhgRwYVqP1ooc4LeSn88lGIKLeMG+10+vJjpP+U9DjlDLlzzn jfrVNAEThSEmBiLjCYIhp/Cy3oN5ji6bnPKnDhN0zHr2QvU+nm9ajG6ys0KU1tpAiZ/E nhm1fmAlsk6xI2omgf6rJCrtM9feGT+Qkr+v5M/FRbLu+KtcHIjMo83MdhoETKA3oAvz iJN6t1TwMVwszEk42sW1gHTsSsBk6FrJkbLt9OVY2uBqAX1P2Z5OY83mBfgfPB/rZ7Xt BsEQ== X-Gm-Message-State: AO0yUKWiGrMWjEmuZk3UlFziwaLIO9nfU0p4kac6c7l6AZoYD48TCzLP vX3PU6BVLSvhzDDHEDTVwY8aq0XXsiI= X-Google-Smtp-Source: AK7set/111nFGWUCI57uuhSVc/0Skp0NJIHh0IuZpufyAM+BLtJQYQ7XxlgudnyYYzbrIzRRQAtOLw== X-Received: by 2002:adf:e682:0:b0:2c5:4e28:e33c with SMTP id r2-20020adfe682000000b002c54e28e33cmr1361936wrm.2.1676919289459; Mon, 20 Feb 2023 10:54:49 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.49 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:49 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:53:58 +0100 Message-Id: <20230220185411.377212-11-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-stringdb): Update to 2.10.1. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 20a46feceb..65d1a9e249 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8192,13 +8192,13 @@ (define-public r-stager (define-public r-stringdb (package (name "r-stringdb") - (version "2.10.0") + (version "2.10.1") (source (origin (method url-fetch) (uri (bioconductor-uri "STRINGdb" version)) (sha256 - (base32 "1md79vx4270wgh07g3m1mypdki1b9d4a558zxplcalwppqh0dsmp")))) + (base32 "0qpss8fcf8ll47jv45ypsqd9jf7ajdiya7w4mw1wysk76spcwllm")))) (properties `((upstream-name . "STRINGdb"))) (build-system r-build-system) (propagated-inputs From patchwork Mon Feb 20 18:53:59 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47164 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 7C24F16AA1; Mon, 20 Feb 2023 19:12:52 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 04B9716A3C for ; Mon, 20 Feb 2023 19:12:52 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZI-0007bn-6o; Mon, 20 Feb 2023 14:11:20 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ5-0007WG-5k for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:07 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ4-0001oN-SC for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:06 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ4-0002vA-Fe for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:06 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 12/24] gnu: r-variantannotation: Update to 1.44.1. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:06 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022211015 (code B ref 61656); Mon, 20 Feb 2023 19:11:06 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:22 +0000 Received: from localhost ([127.0.0.1]:53622 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYL-0002rV-Ty for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:22 -0500 Received: from mail-wr1-f51.google.com ([209.85.221.51]:35475) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJP-0002PK-CH for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:56 -0500 Received: by mail-wr1-f51.google.com with SMTP id v3so2123899wrp.2 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:55 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=OE02CGjmXBGi3s5iz9Uhb5MIACAe/v33CM+MvnDkE3c=; b=b71y1lwS9UA2cxx9ouxV37/SoJFHuLsrzzfiTtwFNlT9gFHlYqxPrCz1tlKwDHYt88 DqkJDoWC9tTZMVZajk/kmRPAS5uGFgnd/Pl97d+zPexAa+KBlGZ5bzsueyVtOvlGkGGk eQaZV01ER5uTptG4sEyKP/EpYmj6Qym/qsjwP9du1AsAkvqumvo6Cq/YrR9U3UE2vayp Xp6kz1JKcB6DxeZNH8c1fnpUqTw58VQZo0ivQ2kVz18znPb/nPwisSKEkYuELVEWFsk9 +3ItdixS4ToK3w5ZrO+yhgO1fMSe5iC2MDOkEQTk0KU/D5iIYLwNXScxpiGDWfRMD7o5 fm3g== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=OE02CGjmXBGi3s5iz9Uhb5MIACAe/v33CM+MvnDkE3c=; b=TR+EM4HelsYTQP668t16C5R/DCQUr6Ocui3D1m2gP+f+wySkhLtErpNLmIzu7yyYu+ R4TrjXPi5hJKH5oCwGGMeWbVKPgl+r3cdbnkDpoSd5rqUqqhCqwtQgJ9V00vvFFVPs6u ouvN9Fbx4Shpu0yqI8fsLtOD65F37s51GH6sUUk5Rjy44pXZVyNCSI+SWJkeRNIxURUd O4QOlk+dGD4atxNehqwF+W/1Rw/PhF/zCy4SGidcLFvBgLvcHBrrVCUGIukjzY8NFkvJ C8ruDnHJx52xvssWdjdfMzGCanBsYlT2/OMzj+gv5x3JGTfzimNtgZtXYICfiE6mpnWO CTZQ== X-Gm-Message-State: AO0yUKWYKvzhp+t3FM/mg/U07z52oITTVOBTnw3P6/mFstiMhkHaLGFP H7YVn/Ro5w2iewDKgm3Ldn2Xm8XHSDc= X-Google-Smtp-Source: AK7set+sb3F2ml4fojWVq1PKjO436Sacq75RXIZP80GoA9zHUlaz2ubXIDkmNFZ9/vWeEZrNv9g2hQ== X-Received: by 2002:a5d:4682:0:b0:2c5:499e:df6f with SMTP id u2-20020a5d4682000000b002c5499edf6fmr1478611wrq.1.1676919289878; Mon, 20 Feb 2023 10:54:49 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.49 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:49 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:53:59 +0100 Message-Id: <20230220185411.377212-12-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.44.1. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 65d1a9e249..e8f4b246ad 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8461,13 +8461,13 @@ (define-public r-valr (define-public r-variantannotation (package (name "r-variantannotation") - (version "1.44.0") + (version "1.44.1") (source (origin (method url-fetch) (uri (bioconductor-uri "VariantAnnotation" version)) (sha256 (base32 - "08rm27jcx6amawqdh59291r0qzkr5cdhbhm0xbjbd5mvdpp1icl8")))) + "13zim7dglsd5w39v22d2qa3d1h5dx33c1r4fz3vzri64kac0lhzx")))) (properties `((upstream-name . "VariantAnnotation"))) (propagated-inputs From patchwork Mon Feb 20 18:54:00 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47150 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 61BF416A98; Mon, 20 Feb 2023 19:11:39 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id EFE1616A3C for ; Mon, 20 Feb 2023 19:11:36 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZ9-0007Xz-UO; Mon, 20 Feb 2023 14:11:11 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ5-0007Wo-OR for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:07 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ5-0001os-F8 for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:07 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ5-0002vP-Ao for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:07 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 13/24] gnu: r-oligo: Update to 1.62.2. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:07 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022311030 (code B ref 61656); Mon, 20 Feb 2023 19:11:07 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:23 +0000 Received: from localhost ([127.0.0.1]:53626 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYM-0002ro-VI for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:23 -0500 Received: from mail-wr1-f43.google.com ([209.85.221.43]:33282) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJP-0002PM-UF for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:56 -0500 Received: by mail-wr1-f43.google.com with SMTP id bo30so1643200wrb.0 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:55 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; t=1676919290; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=foo6joQf/UsfNysAFe6fdvDqjWdil9ZKAnP7lYsLhW4=; b=e0MC/qSE3XyPmjCJ0YLKzhXWJOyUkjSSPjxBtZFC8uhi8CncTWaUUGeTEwxeTLoTIR 26IOSTyYJrBCHVqsLU0hV/6j4FItOzjKKquAN+P38IITSYNEaBVu5wcO8k566taAqd4K +ek7yZZx2l1bqz9pyx2fW1loy37SfoeMfcdCTWHdnot+SVXp3/HmoQpKJlBIdTz24Wav BmIzKFc5DrGVbMkjUoI12hcnkfggeiaBJ8vwsBIYsO+yt4MA/zaFJRPUrchjwHLsQ4AT QeDYq0ZqhupCg2q+tBYKGPGiQ+OeP+iC37EYkexK0FhD3C5gFuej+3QmM04vkCg2Ebqx Orkw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; t=1676919290; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=foo6joQf/UsfNysAFe6fdvDqjWdil9ZKAnP7lYsLhW4=; b=Z9W7HbWTlFYMewurf/ZSSsfG3HgP0QrWa5EgBTxiaXv6CJI6FouTFtevmTTvB9Ul4W jS3DFyTcv81a4Kxl9kGTwB/4bbfY0x2diCbZqs0JC5kr7YOshtwGfS/lgV/cE1F5/SiC v/gNhTkpNwm7LLfNsl2jfdNyTnFTWhmrFTdSOn3dOyybWOism+Jp0j4u/rH7KHI9oavM 6GAKa+oX5l7dJFB5C5zSAlWYcYOunuK7WbalEW/v33/hPSvBUIL392S/pRG2qFnvQk6h PcTgl9IbDBdIvzfxjtCo+fAioZ4W/+3EaEeDYiR7c0pR/CJc+M4hMDAS+RmfKYJFXQcf Iwzg== X-Gm-Message-State: AO0yUKUzebOBlTepPyxi7yJ/TkAi2sBHabwsHQGXTPW2xEi9eyj2Pt1Z 51TNJLA4mOFtdDNUCQdM8u/1jcNSVfo= X-Google-Smtp-Source: AK7set+IQ1lPiJH/BJ1QmDZsro/TRBKXAWIyAYU43zJXIbcvksI5SKqM04VI4tCNkd6Amlvxx5wffA== X-Received: by 2002:adf:d087:0:b0:2c5:5e37:653a with SMTP id y7-20020adfd087000000b002c55e37653amr1286936wrh.7.1676919290343; Mon, 20 Feb 2023 10:54:50 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.49 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:50 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:54:00 +0100 Message-Id: <20230220185411.377212-13-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-oligo): Update to 1.62.2. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e8f4b246ad..c2a6b6fd1f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8776,14 +8776,14 @@ (define-public r-oligoclasses (define-public r-oligo (package (name "r-oligo") - (version "1.62.1") + (version "1.62.2") (source (origin (method url-fetch) (uri (bioconductor-uri "oligo" version)) (sha256 (base32 - "1rhzav57d092ip9qjsmskj3l8h4xyq8cpa2a2jl8g32fwh0dyvsz")))) + "19n0nvgyv2hzzcla93w2bzxvfdqg6walh0s1yykwl5b7ni4cazg9")))) (properties `((upstream-name . "oligo"))) (build-system r-build-system) (inputs (list zlib)) From patchwork Mon Feb 20 18:54:01 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47158 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 91E4F16A9F; Mon, 20 Feb 2023 19:12:07 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id E7ECF16A3C for ; Mon, 20 Feb 2023 19:12:05 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZN-0007g1-BQ; Mon, 20 Feb 2023 14:11:25 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ6-0007XN-OM for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:09 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ6-0001pm-7b for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:08 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ6-0002ve-3F for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:08 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 14/24] gnu: r-interactionset: Update to 1.26.1. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:08 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022311045 (code B ref 61656); Mon, 20 Feb 2023 19:11:08 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:23 +0000 Received: from localhost ([127.0.0.1]:53630 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYN-0002rz-Jk for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:23 -0500 Received: from mail-wr1-f52.google.com ([209.85.221.52]:37704) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJR-0002PQ-7Q for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:57 -0500 Received: by mail-wr1-f52.google.com with SMTP id o4so2203328wrs.4 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:57 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=dbpnG2xhM11P068+irUKwb95kK4G8OkHqz/YZNnpFyw=; b=R/Q1G+tyCbvd01KbJloJgpQJW4ODeBhrKGMnAebRIkHfIrxI1JatId9rknXNxkvEBk VfFJ71eeFpONsBsLsm+mpIAiNk6M2LTKFjXGu3VAjgOHgnEbiWSLaGvgzLfQx/MeCzN+ 9bp779uKjBxRaUr50ermk8XXoXeqKlDYpJ19NW4bLvZYv4B+Wr4p4Csx8l/g37O3ueAQ hAf41VrrqyOqqMyUqUq0AVy63X1UYbuXCKu6/+WcTejW4/hBt7OM+D+S2zTKDLE0NZoN QIqTaDFWRIPjAsaNxAKp9SPeu6uTsyuawAG3Qe3CQ7nPzl2MmOG5lmmmCi9PJdYYXqKN tM7w== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=dbpnG2xhM11P068+irUKwb95kK4G8OkHqz/YZNnpFyw=; b=C+Jgg3j6r6OXoB9yZEpM6UPhsArD3SBRRspAuYOgMnEL4HQmo6/DahRmqPJIGaFC8Y CoCP4Ip79EXnRdXs1RUA9TkHe2YCMwxLwadDaR8fxHhHQufW5P6pCPfrRuyYzgCuTS9X lB0i86fioLjbH4smCxoq1LqtPaZdzJjTzelNFvqcJ9ndMUYO2gqqJfQL8a+u7sGAyBgz TvySAne9/2Vs+GeHslMMwYvyEOs+Pne+suAdeSKOa5riwSwkiRdYFeUVl4TpOHnGYmAE OQza7Oyejg8Fjbqax9+H86RBlq9zYMln0xxTlz6ZREV8wNqaSSwy+lnc/vnCxirmndSw Kzpw== X-Gm-Message-State: AO0yUKVOg+CrwA3k0Hq/V7/KPesg5byoLK/zfM3CLG4EczUB9VA8P07h cVgC3AktRSCBffLh1vcJ97xUvl0+5Pk= X-Google-Smtp-Source: AK7set+o2vxwc297IzjdZMnel5BfvJN0bJ8ee+OX+B6ZBG3IPPWXBnBJI336GT5r2B/q7SUyklsQCw== X-Received: by 2002:adf:ea0f:0:b0:2c5:60e2:ed6f with SMTP id q15-20020adfea0f000000b002c560e2ed6fmr1352537wrm.0.1676919290759; Mon, 20 Feb 2023 10:54:50 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.50 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:50 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:54:01 +0100 Message-Id: <20230220185411.377212-14-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-interactionset): Update to 1.26.1. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index c2a6b6fd1f..0ddd184a4f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9512,14 +9512,14 @@ (define-public r-riboseqr (define-public r-interactionset (package (name "r-interactionset") - (version "1.26.0") + (version "1.26.1") (source (origin (method url-fetch) (uri (bioconductor-uri "InteractionSet" version)) (sha256 (base32 - "14fb780f2g24ay28dy9xkmfziavbkj75v4vc2cmqbxfdsfp4yn0w")))) + "1nk8jhabbrirpyjd1wdy2fjk8y2qi1bsjmgqzh0qi1c83n0ccz5d")))) (properties `((upstream-name . "InteractionSet"))) (build-system r-build-system) From patchwork Mon Feb 20 18:54:02 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47149 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5E83316A9F; Mon, 20 Feb 2023 19:11:33 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 9B11D16A96 for ; Mon, 20 Feb 2023 19:11:32 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZ9-0007Y0-UR; Mon, 20 Feb 2023 14:11:11 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ6-0007XM-DX for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:08 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ5-0001pP-SQ for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:07 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ5-0002vW-O3 for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:07 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 15/24] gnu: r-dnacopy: Update to 1.72.3. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:07 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022311038 (code B ref 61656); Mon, 20 Feb 2023 19:11:07 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:23 +0000 Received: from localhost ([127.0.0.1]:53628 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYN-0002rr-Ac for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:23 -0500 Received: from mail-wr1-f52.google.com ([209.85.221.52]:35478) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJQ-0002PO-M8 for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:56 -0500 Received: by mail-wr1-f52.google.com with SMTP id v3so2123944wrp.2 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:56 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; t=1676919291; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=bNuVoHalb18+8rM9n2IRomYjNv6Q8i0szuO7x02pd60=; b=RJjFLIGRwKfW8CGH4Jj5pnYEbLXPlEi8keikG65RhlX/C6mTLbcvuxCFwGBH2QnI68 exLX8JocMg4EoI5gc8fzVPmbxqi4AgwcGpu8VAwo37k25gf7cAsB5oL8I9Imq8YccQff Z4/2jUmJfFAVFOxCkn6wWJeaadO+ST2o8zT2ZudZ4HwkVfbVmkPXgJfkSIEcyuFVaf/j tYc0JMp1jo2L/VUhRczGOBIZpAaWb6YKxDwoqrrZ2hKRWOedR3J8/cxm9BFFmuzrhovi 1m5miCJSlW9r4Vl9IEVu1gRNMoHfFJzHm5h0xRoDskb1oB1ckbjWHtE3J/dI1XR4tfmt wTSw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; t=1676919291; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=bNuVoHalb18+8rM9n2IRomYjNv6Q8i0szuO7x02pd60=; b=v+HZjSttRGip884z/J7g/Sviwd+Psc00lGXwCYtM2zhySEhLCdALGyZ6MCiuFyIvOQ 2CAjbqtgV+7/NXSpOO2MgsuwEE+v7bTj2lEefHWq5FpZF+KaxGHJ2F17jnf7KTwOz+KV TvmTD2aeekJkL9Hxls6z+mC1jFNS7edWl8ERHNL7CRbCfZHkqrnef7dX4qmQmuAmdYRy Zx3T5gZxuWe/+hXO1Kpe+mr6NXz6gT4xnBVA+K5FPCdMcyj1e6layl/WRTB91sdQcdtK ZaW8YuQjI0TqHgB8E1i5w5Ja1sCy8XocR6IBOfBKNcypodKCwcHXy9/O73zSYtLNG14L riuw== X-Gm-Message-State: AO0yUKUMw2SfiHwDQkTNYKKHQ8w0r/ZvBHziT6Cd38yFl3e7I4CAqvpV AJWqTodXXF/GJoqfAHG6mXMpoHSoxkQ= X-Google-Smtp-Source: AK7set8jjh8mre3XodQQ0TXIjBAO80YjAY/Fei6DVkSjmw9AAT1qW32mUHheSE2T7/MGhIrrhAYyGQ== X-Received: by 2002:a5d:5947:0:b0:2c6:75be:f2de with SMTP id e7-20020a5d5947000000b002c675bef2demr1463816wri.4.1676919291159; Mon, 20 Feb 2023 10:54:51 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.50 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:50 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:54:02 +0100 Message-Id: <20230220185411.377212-15-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.72.3. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0ddd184a4f..190fe23e0a 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10193,14 +10193,14 @@ (define-public r-copynumber (define-public r-dnacopy (package (name "r-dnacopy") - (version "1.72.2") + (version "1.72.3") (source (origin (method url-fetch) (uri (bioconductor-uri "DNAcopy" version)) (sha256 (base32 - "1f6ilfwhli7bdnr48y2ijdydvw7kjbyz701kgbsw3w7inr6x6ayr")))) + "1kxzrny19dqd9pqj27vzr15i071sl8ivznpfd6zlqhcymlcsq7nw")))) (properties `((upstream-name . "DNAcopy"))) (build-system r-build-system) (native-inputs (list gfortran)) From patchwork Mon Feb 20 18:54:03 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47168 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id D3F2016A9F; Mon, 20 Feb 2023 19:13:06 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 2414C16A3C for ; Mon, 20 Feb 2023 19:13:05 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZO-0007hS-Rz; Mon, 20 Feb 2023 14:11:26 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ7-0007XR-7R for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:09 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ6-0001qZ-Mr for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:08 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ6-0002vl-H2 for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:08 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 16/24] gnu: r-lpsymphony: Update to 1.26.3. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:08 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022411054 (code B ref 61656); Mon, 20 Feb 2023 19:11:08 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:24 +0000 Received: from localhost ([127.0.0.1]:53632 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYN-0002s6-TJ for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:24 -0500 Received: from mail-wr1-f42.google.com ([209.85.221.42]:43788) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJR-0002PP-84 for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:57 -0500 Received: by mail-wr1-f42.google.com with SMTP id l1so1926454wry.10 for <61656@debbugs.gnu.org>; 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Mon, 20 Feb 2023 10:54:51 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.51 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:51 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:54:03 +0100 Message-Id: <20230220185411.377212-16-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.26.3. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 190fe23e0a..0e53d367ed 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10351,14 +10351,14 @@ (define-public r-karyoploter (define-public r-lpsymphony (package (name "r-lpsymphony") - (version "1.26.2") + (version "1.26.3") (source (origin (method url-fetch) (uri (bioconductor-uri "lpsymphony" version)) (sha256 (base32 - "167zpf7k7gn7gw2cxkqx89y322qinyzjr1naracp5axj4q2qagm3")))) + "0iqc6km4pw50li2q35km8jpa0p3i6a6way910wcz56yd2jjbjyz5")))) (build-system r-build-system) (arguments (list From patchwork Mon Feb 20 18:54:04 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47162 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 4AD2716AA1; Mon, 20 Feb 2023 19:12:42 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D103D16A3C for ; Mon, 20 Feb 2023 19:12:41 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZP-0007i0-B8; Mon, 20 Feb 2023 14:11:27 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ7-0007Xc-Jt for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:09 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ7-0001qx-16 for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:09 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ6-0002vs-SM for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:08 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 17/24] gnu: r-massspecwavelet: Update to 1.64.1. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:08 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022411062 (code B ref 61656); Mon, 20 Feb 2023 19:11:08 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:24 +0000 Received: from localhost ([127.0.0.1]:53634 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYO-0002sG-9c for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:24 -0500 Received: from mail-wr1-f47.google.com ([209.85.221.47]:41718) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJR-0002PR-I3 for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:58 -0500 Received: by mail-wr1-f47.google.com with SMTP id z8so1924402wrm.8 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:57 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=4A58C69dJt+g9eAFJLXCk8bV7PchpwIDR3SiGuY8/3k=; b=VgRwUNRMaJaYUGr6Pt23js7WNJXuNHzsTvKnxx7UnXanLCzqcLDWhXp3gdyZch4bvE dZRTAZpe3b6oE95aD+4lyl3oSIGG9WH2NBMvf18u6in8uR2McYW6NbjEJ5H7UCjXDGnV Z4vAZBUuLOsn6K3fEmcRCui+HlDU20QMF6irI0Hk2jCrVxVpUOH+iB0gafegzg4Hui1d u13z5kLYE/dB8oG+WAKy/2Jl9b4jgapCQwlLuUr1+ufMGgI3AVxENt9vOc9mcqDe0X0p 6MMAO6+XPo0x8uHwtEmhZAbzKNinfKhdWKkbETgIJ6IuEVfISoWrzGl6UkMDVtYGXeOj 4i3g== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=4A58C69dJt+g9eAFJLXCk8bV7PchpwIDR3SiGuY8/3k=; b=4+9tP+o30DS+W1TizzF699bknzDLiioYmQdMFfGX1RDS1jydY3svzY5xap4JsA1+RO zwqMij6OPuy0lnV9CHytHGW4DYCRdXwQFyjxeovyuq18jbkmIsgOK5GM3wQgW9uqOoPo W4haBuTuqxPDGx8eG5uxRRZcfExJAK8aXd9JiYPER1PVE95Qc1AYCZiq+1TiccD5hfzw fTbOMsEy+B7eosThhPIBLAtifibO7euylZi24sKf3pH2TEmuKNhgcdNsqVwADzBBH7HC ugbqaGkN0FwbeAxNhSL47Dle8UQdWWDRZcgyqr1ISIEeglXQXQ2yuJok6tgX+6RQ8WDv DqGw== X-Gm-Message-State: AO0yUKUKsRhSUzp9gSFaVKFfxzRb0+V3u0XLaeUuCyJp/eBvzKBnI+it fb9uLKs6D5yj5t2/ofR92/r6o4ulng8= X-Google-Smtp-Source: AK7set8O7P8v5uk/GKIvTRswn13FsVu+A4Lrg5NSJg/GTgycyZZmaZfNb9W7wy9c+NIqVSkCavuSrQ== X-Received: by 2002:adf:f942:0:b0:2c5:557f:93b8 with SMTP id q2-20020adff942000000b002c5557f93b8mr1395213wrr.7.1676919292038; Mon, 20 Feb 2023 10:54:52 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.51 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:51 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:54:04 +0100 Message-Id: <20230220185411.377212-17-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.64.1. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0e53d367ed..0668712801 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13004,14 +13004,14 @@ (define-public r-xbseq (define-public r-massspecwavelet (package (name "r-massspecwavelet") - (version "1.64.0") + (version "1.64.1") (source (origin (method url-fetch) (uri (bioconductor-uri "MassSpecWavelet" version)) (sha256 (base32 - "0l86gwq073nbx973v99b0lr9cz0pb72c4asmgj5w16jykicrnxn9")))) + "0p8cd4r3c8va5gybs1vlm3kn7jcg1xg529hvvg27fybb3g91nvqg")))) (properties `((upstream-name . "MassSpecWavelet"))) (build-system r-build-system) From patchwork Mon Feb 20 18:54:05 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47167 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id E2EB616AA1; Mon, 20 Feb 2023 19:12:58 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 6CD5D16A3C for ; Mon, 20 Feb 2023 19:12:58 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZK-0007d6-Br; Mon, 20 Feb 2023 14:11:22 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ8-0007Xu-3z for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:11 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ7-0001rJ-Dn for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:09 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ7-0002w0-8U for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:09 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 18/24] gnu: r-biocfilecache: Update to 2.6.1. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:09 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022511068 (code B ref 61656); Mon, 20 Feb 2023 19:11:09 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:25 +0000 Received: from localhost ([127.0.0.1]:53636 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYO-0002sN-L0 for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:24 -0500 Received: from mail-wr1-f41.google.com ([209.85.221.41]:41713) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJS-0002PV-13 for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:58 -0500 Received: by mail-wr1-f41.google.com with SMTP id z8so1924410wrm.8 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:57 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=eBp5N+y8EQB5M63oHq+vpOxNBJIXWeLoAtsxKEQ99rY=; b=UTW9AWK5hyp205mP/1VTxRUdHdwiidyhhawDIUjkI9eC6NmIFXTwbU9b3AHJZ4F+Wp /SiIUuQOosAtyhFl7Hk9YpH6fuguZJrNXbhtuxP0IapnbvkL6V8JhJQA/H3D8+NLEhNF 7Hl7v924CsP5gmQRpf0obhmBJvZoedebZgZSkvCkDukhySX3AY5LjVJVpMdN67n3Vuwy ACI17UgDwwyrK0AErhIHni8UemxKLVF52ddhbFyBkGalOJXBIlkJPVIojrNzTfg9j9BA mMp3lGZJUB+rQt9xhgxmWhRhSbQ5SRz+c8oEQfxrQ4U0qLv68hnpHbd2tmtaiqBl2B21 pl9Q== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=eBp5N+y8EQB5M63oHq+vpOxNBJIXWeLoAtsxKEQ99rY=; b=oJSNL68vNV+XMEhcEddnVH2O0N4qiTbDN4slIA7qKfZmZdragvUfkQY52LPrsl7vkL JrOYwa3hDPkGuwQAyYLFf7cSwuIaznYm8Dqc0KOxG3cfAMO5YYg2gA322xswMcky1jkS nFy3h+K+EqtUDYARXCHOMTzshkSXfIWEsnBPkRHj2PCLAwp/RjcXPXQrtXL6Nu18OhNn RDyoxRbYq627mSMZlP+rjMsxCSdPbwL92U0UePq/qkwo1tuCX3qdJ9ob5UvyoAXHLblI N+HUCj/Rwb8ta60jz4IrmeYxdjIUZhRXoaqXRedDKNB2RWScVGo8gslRwe3PmP5y0sh0 mY7w== X-Gm-Message-State: AO0yUKXDI7D6q5l86E+1xkeO/OJA7dMIztdl/OTbMUIy0RckoigSfN/M Av0U7JIRMMTQrbsWR3fVTv46dh7kX58= X-Google-Smtp-Source: AK7set8UZ1xMrBX+1G1o3bMhF2cEGALlSplDq4aXVgftqLibZKM6zPV9hIbIlnSJ67uNZ5OY2YxjBA== X-Received: by 2002:a05:6000:108:b0:2c5:5fdc:26d2 with SMTP id o8-20020a056000010800b002c55fdc26d2mr1581754wrx.6.1676919292510; Mon, 20 Feb 2023 10:54:52 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.52 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:52 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:54:05 +0100 Message-Id: <20230220185411.377212-18-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.6.1. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0668712801..6536caf875 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13361,14 +13361,14 @@ (define-public r-arrmnormalization (define-public r-biocfilecache (package (name "r-biocfilecache") - (version "2.6.0") + (version "2.6.1") (source (origin (method url-fetch) (uri (bioconductor-uri "BiocFileCache" version)) (sha256 (base32 - "0skrvmkm6ch8gbpdi4wr59zk5vxzxs7cyqvz3jhki9d8w492wylg")))) + "16316a5pgyl5rppyviibf6z3k3m7xmvqyylf1kxdpg0avs6dk8w7")))) (properties `((upstream-name . "BiocFileCache"))) (build-system r-build-system) (propagated-inputs From patchwork Mon Feb 20 18:54:06 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47169 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 2A49B16A9F; Mon, 20 Feb 2023 19:13:12 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id E306C16A3C for ; Mon, 20 Feb 2023 19:13:10 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZK-0007bz-82; Mon, 20 Feb 2023 14:11:22 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ8-0007Xv-41 for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:11 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ7-0001rV-QQ for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:09 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ7-0002w7-Kx for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:09 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 19/24] gnu: r-variancepartition: Update to 1.28.4. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:09 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022511076 (code B ref 61656); Mon, 20 Feb 2023 19:11:09 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:25 +0000 Received: from localhost ([127.0.0.1]:53638 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYO-0002sY-UE for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:25 -0500 Received: from mail-wr1-f47.google.com ([209.85.221.47]:34322) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJS-0002Pj-Gi for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:58 -0500 Received: by mail-wr1-f47.google.com with SMTP id c12so2204046wrw.1 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:58 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; t=1676919293; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=OP833jwVVNuUVCPhQUhSwYx/ZurXBx46wYs0YunN2LI=; b=miXMudGiXDpIThojpci+OihBrYGUsThh3lrDtGvHDtiY5pmros2u3hTccOBOuXm7od ZwmOqNU0sxIfsaL5kVHKZ3PTSIGy7qQD4vEFq4F690wAKfchICcJTS/bZ/9T/L1N3LVK O9Bub6mXP/VIg1Os8x+0VQ/uz7vmX1aDKFI7fvI/6buij7hlwr/yeOzQEG7rhmcM/EeC VQv/pSdY9RTsACdC/dnFcXsRyzw9pqo6uvpehB1506IRsb6UcCoewYA6Gg/gG5hG/qel gDzqGM5Vt6TALXqDpmCdrcGkqZIuaNlJoi/3Omc+A8SDYRmqX5hWrPF3S/Jq4Sac0tKB dTOw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; t=1676919293; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=OP833jwVVNuUVCPhQUhSwYx/ZurXBx46wYs0YunN2LI=; b=ki221MO7U5lug6/jlCXJNd7qVkWlInhs6hO8M7ua2V04+8Q3uFB+ufVjHw7Rmb5SQ8 C9YFOFYPbx90Zan/mumk7mteJFAQHpUNQL6+HsUCvLWKCeNWm9WA/YmvN8B9sK7YyK+W 1Mmh4HglVN8MhYVpuxalnFZUt2YYJ3CaflUWVnxhI/oXnloL+MU4DNpfzvTS7BqLb6g2 Q7NOd+YuVXwDxu45vmDGGZQhaTP+GUdhvtFpyt4+PmdcYHviQ66hckDyZ1zLsFGuN2gQ jxZwlCczHsV7E9d2l6cYOj71FiffqnuaxhytwHFrYJdB39NAHIziiWakUaoW3dvgjw2j 4xcA== X-Gm-Message-State: AO0yUKUY96KegCrw6RMDpiLGID2bMjr9GOKTkieTSLdEz7tvUgZz6Xlj AyA5tqO1Ch+0JPrfDrnsH+05EafhIeA= X-Google-Smtp-Source: AK7set+Xk4JPysERtaiR0QEQKzDzFHNE+HmK37N4R7aHdQRtKlxnjHJyFKBDksYEANSQEM88+e6RZA== X-Received: by 2002:a5d:5646:0:b0:2c6:3cec:944f with SMTP id j6-20020a5d5646000000b002c63cec944fmr1590336wrw.1.1676919292934; Mon, 20 Feb 2023 10:54:52 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.52 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:52 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:54:06 +0100 Message-Id: <20230220185411.377212-19-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.4. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 6536caf875..677a199dca 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -15246,14 +15246,14 @@ (define-public r-wavetiling (define-public r-variancepartition (package (name "r-variancepartition") - (version "1.28.1") + (version "1.28.4") (source (origin (method url-fetch) (uri (bioconductor-uri "variancePartition" version)) (sha256 (base32 - "0ypw3ckaf4qll83rl2bjzfc7g2m4v0n2mq645ppyfga8wv8kwssy")))) + "1ii4r0c76b7rnisy4qba2cp5686j73s6b3s6pj66w91wq65dykpd")))) (properties `((upstream-name . "variancePartition"))) (build-system r-build-system) From patchwork Mon Feb 20 18:54:07 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47157 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 66D2916A98; Mon, 20 Feb 2023 19:12:05 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 8B54216A3C for ; Mon, 20 Feb 2023 19:12:03 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZG-0007aL-1X; Mon, 20 Feb 2023 14:11:18 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZA-0007YZ-6v for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:13 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ8-0001rw-KK for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:11 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ8-0002wM-GW for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:10 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 20/24] gnu: r-preprocesscore: Update to 1.60.2. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:10 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022511092 (code B ref 61656); Mon, 20 Feb 2023 19:11:10 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:25 +0000 Received: from localhost ([127.0.0.1]:53642 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYP-0002si-Fo for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:25 -0500 Received: from mail-wr1-f53.google.com ([209.85.221.53]:42849) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJT-0002Pq-37 for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:59 -0500 Received: by mail-wr1-f53.google.com with SMTP id j2so2025421wrh.9 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:59 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; t=1676919293; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=p0msRohIthsBh5OPyacvO6QZO6TRZxvqd90IZfcnoWU=; b=AqXmN0dD8DzVn4f9x1BTRvRYzYUWBAny0w45bPIcxBHyfjwIp0zLR4iF14DiHAAoaK WbG1eOShQ4Qvoa9BwzRqrL3i7iXNO7izYEyLPI8cGDR1QAgUnx1ik/I7wSyTUAEFlsOd M1uSTSF1QEFOyntJHJ73+Qk/GhB3EBI7kpY/r9vWCRvXPdUs0fFzUa4vrr0j6qF2LSsT exCWBbulhFz2q1HRPHwmGRq7lFfqUVO/wzR2M0/S3UE8bBuzIsKJToeyv7oKXpxXQ8XW y6KxtRLGVtEAZOPke5ocPYaAK46XHl207Feu5xOYGXjrNMW+a+piEM4aZ2NZ2v+ml7O+ kmvA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; t=1676919293; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=p0msRohIthsBh5OPyacvO6QZO6TRZxvqd90IZfcnoWU=; b=z3gjLdRllxR3bkjdeewnB+4AXEi6oZsOFdFWCguVL4hho+kZgJR2yoHCW4uIszKNBz wtZLAc0tvAmO1ffJ2sh2rdr8uTC1oswewPYKZIsWBCP5GdpdMz4DGuHP1/cCwoIWmTLp 335s4ysQXRWkl1SRiPvdnMFu3XsYV+bBDH1mOyX3nVOSz2WLHJS0X/s05fNRiMT73T/g tyOwh3S7xLW+UrmNB1rJuGRMwnRJsbBFpxG3qN0Qr7nigDdw2Urt5MMwjcnKWrCNwfvf /DVgu5k5iWH3sEIC09Eh656nZ2d9moKrMUcEfnm1bj878slg1F94WvsC3DPnX+sCn0Of aIVw== X-Gm-Message-State: AO0yUKXGgevCiP/Q5fXZsUjbtsrx7NNpjqYZ2zmeuHUlJi5QSHh8qkeL 98gOtQSRx7tpWig+SthgZRRYIjQXM5E= X-Google-Smtp-Source: AK7set+LeLSNEUPEcVcMQ0W/3PCtfsbaYti6FqjIs6LaJAPLRCUJT/783A4TEtWftiIh0o9W0aup8Q== X-Received: by 2002:a5d:5956:0:b0:2c5:595a:1c92 with SMTP id e22-20020a5d5956000000b002c5595a1c92mr1219522wri.6.1676919293413; Mon, 20 Feb 2023 10:54:53 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.53 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:53 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:54:07 +0100 Message-Id: <20230220185411.377212-20-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.60.2. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 677a199dca..ab2b9cd433 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -16802,14 +16802,14 @@ (define-public r-fourcseq (define-public r-preprocesscore (package (name "r-preprocesscore") - (version "1.60.1") + (version "1.60.2") (source (origin (method url-fetch) (uri (bioconductor-uri "preprocessCore" version)) (sha256 (base32 - "1rwr31jp4dh3xcfx1kx8rz5xvyx1mrwy85hqrjrfr4m6h0qv28k1")))) + "0ikxikmz9dy09g726q1wygymm6z2imlgfiizkgh1cl4s0m35fbbd")))) (properties `((upstream-name . "preprocessCore"))) (build-system r-build-system) From patchwork Mon Feb 20 18:54:08 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47153 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id A05D516AA1; Mon, 20 Feb 2023 19:11:51 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id AE7A216A98 for ; Mon, 20 Feb 2023 19:11:50 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZ3-0007U6-71; Mon, 20 Feb 2023 14:11:05 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ2-0007Sh-CB for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:04 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ2-0001nM-3a for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:04 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ1-0002uK-Q4 for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:03 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 21/24] gnu: r-scuttle: Update to 1.8.4. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022010965 (code B ref 61656); Mon, 20 Feb 2023 19:11:03 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:20 +0000 Received: from localhost ([127.0.0.1]:53608 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYJ-0002qg-Rl for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:20 -0500 Received: from mail-wr1-f48.google.com ([209.85.221.48]:34312) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJO-0002PC-4s for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:54 -0500 Received: by mail-wr1-f48.google.com with SMTP id c12so2204077wrw.1 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:54 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=DNtx3M7/eCsL1f4QerdYJaJjkNwNt7ryV+ODKDA3uNo=; b=NlKnyNvPEffW99QKkGrIzDp0/cjb/wF7uyk1k9rqx0z5ke2UvWE7qXbpEcnI7GqmDM NPz7nVZLStGZOJPTwBnMCxKIg1zV1KQKzqNqTY0fYzr8YxyQ4lXIzQpQT3vbH7PR9Bts 65CIcLMXtHFVVLgCe1/ABkRFPvmMBRJ6u1Yml6faMx4GjPocWyQgtL5Qh18zHYPiWiH8 2viqdZm3Iw61AUR5Wkr1yXqlHVhaqNp/cVNNaG+cD9iQwFNZSWGs5pSp2aXJCD6rByHf 99R4KFU5AX3gihIPZjmpLvNISO6zowh0Z1vPhwPxMa9BLyFc9iZe6r6S99EO38feEXKO 50pg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=DNtx3M7/eCsL1f4QerdYJaJjkNwNt7ryV+ODKDA3uNo=; b=PYxGCSZ3KUgnwB90sijHQkbhDFyGbTUCv5L5d6eNvlAPSiazstkhS16etBuxghKGjs efG55CDYC7x9JwqtA3VDYRYPXRncNGCCiorzeHEGYK4wHVltBQaxnwBGReijw+sIcmX0 wNa/VumFfA874XrO9OY4Cfu6qp+FQ0Kn86ZU0uJ+cI8TFOWMw/UDyYhjItCagXFmz+2p 9EbrJV7Tfr6U5riK+l8giJ0hfqSXfawlRCQlLKtvPRNrj3Qd7oDuN+n1nOmBRLwpcir2 ShLvBKmGY33+BU8yuVb/bKktzljSVws8MRErpMQuvRlA58PQUAi/f+/qvtxpe5A2wPG6 ae6A== X-Gm-Message-State: AO0yUKUqN/Rk3NDC4RShe6pkI9wGwOP7b65TePtQs1UegLdZG1LNb5GF 4nB2MCNJtMHMjh4f8+JeyEHyHgmM6lE= X-Google-Smtp-Source: AK7set9PmVs+zFsSrpishn2PUUEtbqNK3gtlfHgh7P3ouKa1bby2Qg/pDMFghiSS6z+FZRfIUNDbCA== X-Received: by 2002:a05:6000:108:b0:2c5:5fdc:26d2 with SMTP id o8-20020a056000010800b002c55fdc26d2mr1581798wrx.6.1676919293819; Mon, 20 Feb 2023 10:54:53 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.53 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:53 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:54:08 +0100 Message-Id: <20230220185411.377212-21-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-scuttle): Update to 1.8.4. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ab2b9cd433..38fecc114a 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -17440,14 +17440,14 @@ (define-public r-singler (define-public r-scuttle (package (name "r-scuttle") - (version "1.8.3") + (version "1.8.4") (source (origin (method url-fetch) (uri (bioconductor-uri "scuttle" version)) (sha256 (base32 - "1wgh28rj8m5dz89s9y4rzfy68d8ign6pcnnwj9g7h4sc3jfsg56i")))) + "04257gl995r575md1n3h2gy502yi6c8x3352l96mib7rdv4yg53f")))) (properties `((upstream-name . "scuttle"))) (build-system r-build-system) (propagated-inputs From patchwork Mon Feb 20 18:54:09 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47147 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id CE83816A9F; Mon, 20 Feb 2023 19:04:22 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 2899D16A96 for ; Mon, 20 Feb 2023 19:04:21 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBSG-0001XS-0q; Mon, 20 Feb 2023 14:04:04 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBSE-0001XG-QQ for guix-patches@gnu.org; Mon, 20 Feb 2023 14:04:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBSE-0000Iv-Dd for guix-patches@gnu.org; Mon, 20 Feb 2023 14:04:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBSE-0002gH-7l for guix-patches@gnu.org; Mon, 20 Feb 2023 14:04:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 22/24] gnu: r-scran: Update to 1.26.2. 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Mon, 20 Feb 2023 10:54:54 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.53 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:54 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:54:09 +0100 Message-Id: <20230220185411.377212-22-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-scran): Update to 1.26.2. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 38fecc114a..b31480574c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -17520,14 +17520,14 @@ (define-public r-scater (define-public r-scran (package (name "r-scran") - (version "1.26.1") + (version "1.26.2") (source (origin (method url-fetch) (uri (bioconductor-uri "scran" version)) (sha256 (base32 - "1sqc8pf1qzm24kf1l45da12wbzv0nxsy6l3v9fc8srmnvk37p04p")))) + "0r80k4dsk609l9ha1jl64yhpwnf0x37i28k9largqsffsl6hw0fy")))) (build-system r-build-system) (propagated-inputs (list r-beachmat From patchwork Mon Feb 20 18:54:10 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47146 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 9E4F616A96; Mon, 20 Feb 2023 19:02:19 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 203A216A96 for ; Mon, 20 Feb 2023 19:02:18 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBQN-000061-1S; Mon, 20 Feb 2023 14:02:07 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBQJ-0008Tf-4v for guix-patches@gnu.org; Mon, 20 Feb 2023 14:02:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBQI-0008Tz-OB for guix-patches@gnu.org; Mon, 20 Feb 2023 14:02:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBQH-0002dB-VY for guix-patches@gnu.org; Mon, 20 Feb 2023 14:02:01 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 23/24] gnu: r-gviz: Update to 1.42.1. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:02:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167691970210084 (code B ref 61656); Mon, 20 Feb 2023 19:02:01 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:01:42 +0000 Received: from localhost ([127.0.0.1]:53589 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBPy-0002cZ-0h for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:01:42 -0500 Received: from mail-lj1-f170.google.com ([209.85.208.170]:45744) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBPu-0002cH-1Z for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 14:01:40 -0500 Received: by mail-lj1-f170.google.com with SMTP id bx43so1934416ljb.12 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 11:01:37 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; t=1676919692; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=/C1zsOkjQ+VTNM9uf1sRDCSjwme7t/f//VqmPYTKdmQ=; b=j74Z7tazFEoLML9t92mkqWXzL7NjOImNe/9Vl7veZ+iVZETIMkcaSyCJFWTuXR8ZvU 3oDa4HuM2ptnf8+0r3V8iK3Eyhzku/KaThp8Jr1Yg8/cvx0XrA7RcHO58mSRa37CoXfl 9102z9+uXeGywl7NMUqU3bXYkEu+g/G7s6KvZIUvBZJdgVijYqZjlN8I3dCwLQx7nRCI rZlUCBhS3ce0iFNsnjOqIjilZRX+8h55tmwbfju1OVbhKVjyhZ9dGgvEmHshm+Svkta6 nWFtshJgsiDMUtdCxQeia5wn9hmp081YpPOiZ5zb3J9FuHK7KGE0gwn1ifbnHH66QbS9 oVrQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; t=1676919692; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=/C1zsOkjQ+VTNM9uf1sRDCSjwme7t/f//VqmPYTKdmQ=; b=pA5IuXXEHcSbhr++NTvGCpj2jYfJsI5dcEsuHDl6B7FOFRibdiUq+Pa4byn5kMBp4x BdkgZNEmAzAUXztlhsAewVZNZKVP3Prv6Hvvpa34zduUh6HiYWkiEWtyN5LUXiVC/8sY rwSD0tQDGQvgHr/Ld9mnNJUj1rrmLhbg+YEXqg7oK129G0q+SXeqpSd3aklfuwYnPDF7 vjAHbTJ9Rnhf9lU3dmPj5jEQX3lGRkV9bAXXSCR5nuWXso9hwfKJZQMwBWRhJSY/+HM+ FP32Krc7F1Tg5PEft6jW5aYgxihQQgPr8vYgkDWS1SAKhLPnTT9eHCSGCHi2PPJZpT+U Xwfw== X-Gm-Message-State: AO0yUKU2pBrgiXIDlM/hD/NgiDdXMHKdgFE8qsT1ZRePlLdrWbHQ101v pp2wBXqcoIR2MqcAb7YMIX42dygwT7E= X-Google-Smtp-Source: AK7set/aKygSz7KpaeL1dwmRguZ7iTsoRRPWgOTkm6BrZiROJQrPpPGB7Gw5vBlux0SPFpETGM0jKw== X-Received: by 2002:a5d:69d2:0:b0:2c5:5b85:3b43 with SMTP id s18-20020a5d69d2000000b002c55b853b43mr1602840wrw.7.1676919294706; Mon, 20 Feb 2023 10:54:54 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.54 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:54 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:54:10 +0100 Message-Id: <20230220185411.377212-23-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-gviz): Update to 1.42.1. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b31480574c..a4a4238187 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -18039,14 +18039,14 @@ (define-public r-gqtlstats (define-public r-gviz (package (name "r-gviz") - (version "1.42.0") + (version "1.42.1") (source (origin (method url-fetch) (uri (bioconductor-uri "Gviz" version)) (sha256 (base32 - "09j94kk3dd3bbfw6a2l14i7vd4rh11g9lxhw4zsm15vg71cm1lv9")))) + "01qs60sdh7c8cxkv3qbfcfwpjhab88j872va50fi95xsqnmj5isa")))) (properties `((upstream-name . "Gviz"))) (build-system r-build-system) (propagated-inputs From patchwork Mon Feb 20 18:54:11 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 47163 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id E93C516AA1; Mon, 20 Feb 2023 19:12:48 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 96C5C16A3C for ; Mon, 20 Feb 2023 19:12:48 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pUBZ5-0007Wj-O6; Mon, 20 Feb 2023 14:11:07 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pUBZ4-0007V8-He for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:06 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pUBZ4-0001oD-8b for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:06 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pUBZ4-0002v3-40 for guix-patches@gnu.org; Mon, 20 Feb 2023 14:11:06 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61656] [PATCH 24/24] gnu: r-tximeta: Update to 1.16.1. Resent-From: Simon Tournier Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 20 Feb 2023 19:11:06 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61656@debbugs.gnu.org Cc: Simon Tournier Received: via spool by 61656-submit@debbugs.gnu.org id=B61656.167692022211008 (code B ref 61656); Mon, 20 Feb 2023 19:11:06 +0000 Received: (at 61656) by debbugs.gnu.org; 20 Feb 2023 19:10:22 +0000 Received: from localhost ([127.0.0.1]:53620 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBYL-0002rO-Lb for submit@debbugs.gnu.org; Mon, 20 Feb 2023 14:10:21 -0500 Received: from mail-wr1-f48.google.com ([209.85.221.48]:34312) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pUBJP-0002PC-EZ for 61656@debbugs.gnu.org; Mon, 20 Feb 2023 13:54:56 -0500 Received: by mail-wr1-f48.google.com with SMTP id c12so2204126wrw.1 for <61656@debbugs.gnu.org>; Mon, 20 Feb 2023 10:54:55 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=gmm3xfwjvEPMN3HfTH+ZlgrchVi9c7GoUPEdnvQNV6g=; b=lrBA6JIF4dkAx5DGxOX8dw2s7kMoHlybmWX8XffG7OcEPZ/XUChgygKiwf5FAqj+g8 I5p+IeLgBjU31GF4fexotHHYdCRfTWU7h2aO3vOQXy3Sd3l5IzUFZJMl0laHOYaBL4yh mqhD1513mV+QDgUoUZdN1kxApCsws5rMESIzd4y0hu0LLzl1IuIChnP+IvDYq67aOzrA C/NBVpNUah7ceipXgSfDDPwb5x2EQ37GcDGMu+D4MawLiPeOw+yY9j/F32uIr919lslj v4nph9kPOTLcSUMrksBWqTLrOIyhE515kwl28uChJBQxW3sGUtBMHQTJbB7MHkJCYGxi xKvw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=gmm3xfwjvEPMN3HfTH+ZlgrchVi9c7GoUPEdnvQNV6g=; b=m0v9AjvX6AccmeyNcbds7iMQQDTR90XCyqZKpOOvlo8rqCVU3Y22JmZn1eSKGfoDsH My25H/Mrl1j9xAqxG5qtSvf6X+IUbkr11vu2+lVFRhhC8Ak/JKlNWBkNKuxrl1VY78dL OH6hGi+nBqWHCj4S6thtXyDab4u4Sx6CXZvN2RktZS7wvps53fDaPN/EzppP4NX/7xkZ 6stuuA8cP7WnsQlIXWAcYRJAxm9h8Epo1uEStbmkixU6DQr4U1FOsBryL7RPL3ia4jeb zVJ+ieYWNV35lisqy7zLf6CeKQeD5wL+PFqoB9N2NR5AUHwLxTmPrD0bYYfPmfVSk5RP KODA== X-Gm-Message-State: AO0yUKWb8b15JHeTvfoFZlv/noxuEAORNck3xjGW1/NvUwEq1LXdLcoD yHbRburkUZd2ILbRnjyS7HWBXWEaLQA= X-Google-Smtp-Source: AK7set9gpSGjw2fnMMn+0NE7IU+IDfV70T0vLj4Os6OMCI6+vVXxNWuGS4J4XxPhVzmEpqRR4qRI+g== X-Received: by 2002:a5d:6946:0:b0:2c6:f9e8:a212 with SMTP id r6-20020a5d6946000000b002c6f9e8a212mr1207331wrw.2.1676919295175; Mon, 20 Feb 2023 10:54:55 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id j8-20020a5d6048000000b002c553e061fdsm4824227wrt.112.2023.02.20.10.54.54 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 20 Feb 2023 10:54:54 -0800 (PST) From: Simon Tournier Date: Mon, 20 Feb 2023 19:54:11 +0100 Message-Id: <20230220185411.377212-24-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230220185411.377212-1-zimon.toutoune@gmail.com> References: <20230220185411.377212-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-tximeta): Update to 1.16.1. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a4a4238187..f6bb6ab342 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -19542,14 +19542,14 @@ (define-public r-tricycle (define-public r-tximeta (package (name "r-tximeta") - (version "1.16.0") + (version "1.16.1") (source (origin (method url-fetch) (uri (bioconductor-uri "tximeta" version)) (sha256 (base32 - "0v1s5ssinyrizpg2i88dn2ckzs4i16hjfg2pzxhal3ypsiw24qna")))) + "15qf8s9akl5qp5wklph5i61d96d9ifr5ijl796v1vafwrj4f3wpa")))) (properties `((upstream-name . "tximeta"))) (build-system r-build-system) (propagated-inputs