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Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 02 Feb 2023 10:16:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 61224 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61224@debbugs.gnu.org X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.16753329401537 (code B ref -1); Thu, 02 Feb 2023 10:16:02 +0000 Received: (at submit) by debbugs.gnu.org; 2 Feb 2023 10:15:40 +0000 Received: from localhost ([127.0.0.1]:60874 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pNWd2-0000Oi-0k for submit@debbugs.gnu.org; Thu, 02 Feb 2023 05:15:40 -0500 Received: from lists.gnu.org ([209.51.188.17]:56158) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pNWcx-0000OX-Bv for submit@debbugs.gnu.org; Thu, 02 Feb 2023 05:15:38 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pNWcw-0002PY-SU for guix-patches@gnu.org; Thu, 02 Feb 2023 05:15:34 -0500 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pNWct-0002pH-H2 for guix-patches@gnu.org; Thu, 02 Feb 2023 05:15:33 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1675332917; x=1677147318; bh=5ONolicGKhWhYo3 AfkrLEAFmwwcVP/JdxvQtCUaahyY=; b=ZyCIAePH39WOw9wLBZSH2uHU5hXQ+lH E959bMaN7rnpSDvDOGLwwPCKVo0KBW28Pyuh48kuuCLGqoVTbWO87T/AjgYqIrlR u2FCcLuo2wj5M7UU726CHT61L18jQH9rz3Du53gFoZHwVF4tc0BMbY6k+5Hr1q5B KDz4jOXchDkc= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 07C5BA04CE for ; Thu, 2 Feb 2023 11:15:16 +0100 (CET) Received: from localhost.localdomain (10.84.128.47) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.17; Thu, 2 Feb 2023 11:15:14 +0100 From: Navid Afkhami Date: Thu, 2 Feb 2023 11:15:04 +0100 Message-ID: <20230202101504.22751-1-navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 X-Originating-IP: [10.84.128.47] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27422.007 X-TM-AS-Result: No-10--6.346400-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnd6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VICu qghmtWfXXt3JNptef3p4Zvg4N7yewiq+GZ9ZHxIhuW77/y896sj4qCLIu0mtIEJ1hMCC63pYqbs +nJ/tFJG6H43t6OqhlBJTjjs9yT6Yo8WMkQWv6iXBcIE78YqRWvcUt5lc1lLgoGRyAacnhaaUfy uO43XUoRtOFa5P8KLalqomBLiTkwG6tdu7BrVHhn7cGd19dSFd X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.346400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27422.007 X-TM-SNTS-SMTP: F191F582B32081F88E7117AA06E773E5CCB282827AE1619A012823E2279AF8722002:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-streamgraph): New variable. --- gnu/packages/bioinformatics.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8c75607a65..714db27c16 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -690,6 +690,39 @@ (define-public r-rhtslib12 developers of other R packages who wish to make use of HTSlib.") (license license:lgpl2.0+)))) +(define-public r-streamgraph + (let ((commit "76f7173ec89d456ace5943a512e20b1f6810bbcb") + (revision "1")) + (package + (name "r-streamgraph") + (version (git-version "0.9.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/hrbrmstr/streamgraph") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "010rhnby5a9dg08jvlkr65b3p9iipdxi2f5m1k6j53s80p25yvig")))) + (properties `((upstream-name . "streamgraph"))) + (build-system r-build-system) + (propagated-inputs (list r-dplyr + r-htmltools + r-htmlwidgets + r-magrittr + r-tidyr + r-xts)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/hrbrmstr/streamgraph") + (synopsis "This is an htmlwidget for building streamgraph visualizations") + (description + "A streamgraph is a type of stacked area chart. +It represents the evolution of a numeric variable for several groups. +Areas are usually displayed around a central axis, and edges are rounded +to give a flowing shape.") + (license license:expat)))) + (define-public pbbam (package (name "pbbam")