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(python-pytest-flakes)[native-inputs]: Remove python-pytest-pep8. * gnu/packages/machine-learning.scm (python-keras, python-keras-applications)[native-inputs]: Remove python-pytest-pep8. --- gnu/packages/check.scm | 33 ------------------------------- gnu/packages/machine-learning.scm | 3 +-- 2 files changed, 1 insertion(+), 35 deletions(-) diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm index f131a0be01..baa3a2f4c3 100644 --- a/gnu/packages/check.scm +++ b/gnu/packages/check.scm @@ -3090,39 +3090,6 @@ (define-public python-pytest-mypy-testing expression this allows you to check mypys type interference.") (license (list license:expat license:asl2.0)))) -(define-public python-pytest-pep8 - (package - (name "python-pytest-pep8") - (version "1.0.6") - (source (origin - (method url-fetch) - (uri (pypi-uri "pytest-pep8" version)) - (sha256 - (base32 - "06032agzhw1i9d9qlhfblnl3dw5hcyxhagn7b120zhrszbjzfbh3")))) - (build-system python-build-system) - (arguments - `(#:tests? #f ; Fails with recent pytest and pep8. See upstream issues #8 and #12. - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'fix-dependencies - (lambda _ - (substitute* "setup.py" - (("'pytest-cache', ") "")))) ; Included in recent pytest - (replace 'check - (lambda* (#:key tests? inputs outputs #:allow-other-keys) - (when tests? - (add-installed-pythonpath inputs outputs) - (invoke "pytest" "-v"))))))) - (native-inputs - (list python-pytest)) - (propagated-inputs - (list python-pep8)) - (home-page "https://bitbucket.org/pytest-dev/pytest-pep8") - (synopsis "Py.test plugin to check PEP8 requirements") - (description "Pytest plugin for checking PEP8 compliance.") - (license license:expat))) - (define-public python-pytest-perf (package (name "python-pytest-perf") diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 1a007520a4..c051974244 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -3903,7 +3903,7 @@ (define-public python-keras-applications (propagated-inputs (list python-h5py python-numpy)) (native-inputs - (list python-pytest python-pytest-cov python-pytest-pep8 + (list python-pytest python-pytest-cov python-pytest-xdist)) (home-page "https://github.com/keras-team/keras-applications") (synopsis "Reference implementations of popular deep learning models") @@ -4073,7 +4073,6 @@ (define-public python-keras python-pandas python-pytest python-pytest-cov - python-pytest-pep8 python-pytest-timeout python-pytest-xdist python-pyux From patchwork Thu Feb 27 14:27:03 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39355 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5917427BBE9; Thu, 27 Feb 2025 14:32:58 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 932CA27BBE2 for ; Thu, 27 Feb 2025 14:32:57 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnevp-0000ce-MM; Thu, 27 Feb 2025 09:32:10 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnevk-0000S0-TG for guix-patches@gnu.org; Thu, 27 Feb 2025 09:32:05 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnevk-0006IB-JT for guix-patches@gnu.org; Thu, 27 Feb 2025 09:32:04 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=YQKbpBZrXGBk8WStWouGej+P+SWDjLOkvj/O1eaUXIU=; b=aJt57M+ciR85D/7qdSbSOIX4ie7NrZkNKd5IqHmnjpNuDCGvKVGBoqdSCnf+6LQ0dDVe1U7+oNtAUjruE+s10lySrqBa7ks9Fcq0ccSuCr6fSF0G46CxwuGn7l0jEDL0aWs2bvR8Np0z6/FjuZ+0dzhSnhnHofQa3B3hUIfMCligaE3dKr3DipRSpUZerdaGczHjhvQ+BlD26vRTVa8fXV6YKHPeghXsYRF2bLbkya7XGLXhZkwhIW8XjPEZUeNIMbP74ySb2GzqUx/gxD1ApshfnUCd2ObM1H/fMzhqh6PhdscM14yehAySKptFXbXbZKMweEUDKK0WF7qR4mtO8w==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnevk-0000lG-A6 for guix-patches@gnu.org; Thu, 27 Feb 2025 09:32:04 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 02/48] gnu: Remove python-pep8. 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(python-cliapp, python-ttystatus)[native-inputs]: Remove python-pep8. * gnu/packages/radio.scm (chirp)[native-inputs]: Remove python-pep8. --- gnu/packages/python-xyz.scm | 27 ++------------------------- gnu/packages/radio.scm | 1 - 2 files changed, 2 insertions(+), 26 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 0cb681f401..33e58fb205 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -15790,29 +15790,6 @@ (define-public python-sentry-sdk application monitoring and error tracking software.") (license license:bsd-2))) -(define-public python-pep8 - ;; This package has been renamed to ‘pycodestyle’ and is no longer updated. - ;; Its last release (1.7.1) adds only a scary warning to this effect, breaking - ;; some dependents' test suites, and nothing more. - (package - (name "python-pep8") - (version "1.7.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "pep8" version)) - (sha256 - (base32 - "002rkl4lsn6x2mxmf8ar00l0m8i3mzrc6pnzz77blyksmpsxa4x1")) - (patches (search-patches "python-pep8-stdlib-tokenize-compat.patch")))) - (build-system python-build-system) - (home-page "https://pep8.readthedocs.org/") - (synopsis "Python style guide checker") - (description - "This tools checks Python code against some of the style conventions in -PEP 8.") - (license license:expat))) - (define-public python-pep8-naming (package (name "python-pep8-naming") @@ -25906,7 +25883,7 @@ (define-public python-cliapp ;; fails due to deprecation warnings, etc. #:tests? #f)) (native-inputs - (list python-coverage-test-runner python-pep8)) + (list python-coverage-test-runner)) (propagated-inputs (list python-pyaml)) (home-page "https://liw.fi/cliapp/") @@ -25932,7 +25909,7 @@ (define-public python-ttystatus (file-name (git-file-name name version)))) (build-system python-build-system) (native-inputs - (list python-coverage-test-runner python-pep8)) + (list python-coverage-test-runner)) (arguments `(#:phases (modify-phases %standard-phases diff --git a/gnu/packages/radio.scm b/gnu/packages/radio.scm index cda2f1907c..d2c8bee76b 100644 --- a/gnu/packages/radio.scm +++ b/gnu/packages/radio.scm @@ -3272,7 +3272,6 @@ (define-public chirp (native-inputs (list python-mock python-mox3 - python-pep8 python-pytest python-pytest-mock python-pyyaml From patchwork Thu Feb 27 14:27:04 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39354 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 7A9B927BBE9; Thu, 27 Feb 2025 14:31:38 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D510227BBE2 for ; Thu, 27 Feb 2025 14:31:34 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnevC-0007Xj-0i; Thu, 27 Feb 2025 09:31:30 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tneup-0006ue-MO for guix-patches@gnu.org; Thu, 27 Feb 2025 09:31:08 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tneup-00065b-D8 for guix-patches@gnu.org; Thu, 27 Feb 2025 09:31:07 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=vQEdMbOObRFAEPJ33UksOhhgH4pxcvDh9Ie2vbjbpZ8=; b=bjlymtsLTbL9zjJr8Lvu9h/JRDUW979RTrKe8d0G31NrnNvvcS6BZ3jdazp7/0YPt88ucOrbjMy4n5c3k6IIeqi/M+SQsQzJHsf/95JbHpIpJHVBwI1zsU+b3jGhAaC/H81VvEFyKuoQYLTwiT5Txex9boSZH/00qb6pSu4LjbkuTjeHse9IK9TNAO73e45WIYuA8qOlXTQzMkjjDKqRcjuC/1zSdoKv10GrPlSR8Ya2UAoqrv869ZgnAntCAvrXpKqCI4ZT+XWPKKubKBhyRAtUWwgzf7TWro+3NG9VEgU/KZOtv0QDwsPOCG+4+eVtGGnkon1zai3LJHEgfneNZg==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tneup-0000bv-4K for guix-patches@gnu.org; Thu, 27 Feb 2025 09:31:07 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 03/48] guix: import: pypi: Ignore pypi-ignored-inputs. 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(compute-inputs): Use it. * tests/pypi.scm (parse-requires.txt): Add ignored input to test the feature. * guix/lint.scm (check-inputs-should-be-native): Adapt list. (check-inputs-should-not-be-an-input-at-all): Use pypi-ignored-list. Change-Id: I774e526c5a090026e778ee44049637174a1dca95 --- guix/import/pypi.scm | 21 ++++++++++++++++++--- guix/lint.scm | 10 ++++++---- tests/pypi.scm | 3 ++- 3 files changed, 26 insertions(+), 8 deletions(-) diff --git a/guix/import/pypi.scm b/guix/import/pypi.scm index 4af02dd250..a49ab1e429 100644 --- a/guix/import/pypi.scm +++ b/guix/import/pypi.scm @@ -14,6 +14,7 @@ ;;; Copyright © 2022 Vivien Kraus ;;; Copyright © 2021 Simon Tournier ;;; Copyright © 2022 Hartmut Goebel +;;; Copyright © 2024 Nicolas Graves ;;; ;;; This file is part of GNU Guix. ;;; @@ -62,6 +63,7 @@ (define-module (guix import pypi) #:use-module (guix upstream) #:use-module ((guix licenses) #:prefix license:) #:export (%pypi-base-url + pypi-ignored-inputs parse-requires.txt parse-wheel-metadata specification->requirement-name @@ -78,6 +80,18 @@ (define %pypi-base-url ;; Base URL of the PyPI API. (make-parameter "https://pypi.org/pypi/")) +(define pypi-ignored-inputs + ;; This list contains packages that are useful for development or quality + ;; testing, but that most of the time are not necessary to have as an input. + (list "argparse" ; native + "tox" ; test wrapper for other environments + "codecov" "coverage" ; coverage + "black" "isort" "pycodestyle" "pep8" ; style + "pyflakes" "flake8" "pylint" "mypy" ; style+lint + "coveralls" "twine" ; upload integration tools + "pytest-isort" "pytest-flake8" "pytest-cov" "pytest-black" + "pytest-pep8" "pytest-mypy" "pytest-pep8" "pre-commit")) ; variants + (define non-empty-string-or-false (match-lambda ("" #f) @@ -464,9 +478,10 @@ (define (compute-inputs source-url wheel-url archive) "Given the SOURCE-URL and WHEEL-URL of an already downloaded ARCHIVE, return the corresponding list of records." (define (requirements->upstream-inputs deps type) - (filter-map (match-lambda - ("argparse" #f) - (name (upstream-input + (filter-map (lambda (name) + (if (member name pypi-ignored-inputs) + #f + (upstream-input (name name) (downstream-name (python->package-name name)) (type type)))) diff --git a/guix/lint.scm b/guix/lint.scm index d54db725b5..caa4f63f88 100644 --- a/guix/lint.scm +++ b/guix/lint.scm @@ -73,6 +73,7 @@ (define-module (guix lint) hg-reference-url) #:autoload (guix bzr-download) (bzr-reference? bzr-reference-url) + #:use-module ((guix import pypi) #:select (pypi-ignored-inputs)) #:use-module (guix import stackage) #:use-module (ice-9 match) #:use-module (ice-9 regex) @@ -588,14 +589,12 @@ (define (check-inputs-should-be-native package) "m4" "qttools-5" "yasm" "nasm" "fasm" - "python-coverage" "python-cython" "python-docutils" "python-mock" "python-nose" "python-pbr" "python-pytest" - "python-pytest-cov" "python-setuptools-scm" "python-sphinx" "scdoc" @@ -617,8 +616,11 @@ (define (check-inputs-should-be-native package) (define (check-inputs-should-not-be-an-input-at-all package) ;; Emit a warning if some inputs of PACKAGE are likely to should not be ;; an input at all. - (let ((input-names '("python-pip" - "python-pre-commit"))) + (let ((input-names (append + '("python-pip" + "python-pre-commit") + (map (cut string-append "python-" <>) + pypi-ignored-inputs)))) (map (lambda (input) (make-warning package diff --git a/tests/pypi.scm b/tests/pypi.scm index 3fbce1786f..f848325ad7 100644 --- a/tests/pypi.scm +++ b/tests/pypi.scm @@ -97,6 +97,7 @@ (define test-requires.txt "\ [test] pytest (>=2.5.0) +pytest-cov # read but ignored ") ;; Beaker contains only optional dependencies. @@ -258,7 +259,7 @@ (define-syntax-rule (with-pypi responses body ...) (map specification->requirement-name test-specifications)) (test-equal "parse-requires.txt" - (list '("foo" "bar") '("pytest")) + (list '("foo" "bar") '("pytest" "pytest-cov")) (mock ((ice-9 ports) call-with-input-file call-with-input-string) (parse-requires.txt test-requires.txt))) From patchwork Thu Feb 27 14:27:05 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39356 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 03D6727BBE2; Thu, 27 Feb 2025 14:33:01 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 4DEFD27BBE9 for ; Thu, 27 Feb 2025 14:33:00 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnevQ-00082u-F2; Thu, 27 Feb 2025 09:31:44 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tneus-0006vB-3d for guix-patches@gnu.org; Thu, 27 Feb 2025 09:31:13 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tneur-00065j-I9 for guix-patches@gnu.org; Thu, 27 Feb 2025 09:31:09 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=PuOfSBofn+OY1Dx4BWzahn0UJlSQN+2AGSNY2CB1D68=; b=QPyQ7FUfxuxGRZyzqRYxALU4cHFPTn6VdazXVZ7Njslv8h8d8bnAu1+9KxxXQy6XglhwM59pHxVxH2b1WZnl8dGBSG4UBAc+mHnYRcPF3cgQl82kUsJR5RNV5t4Fp/rvZBaoA/KBsvN8u7tyc4RvWeXwdsvjiDs81J+hrXsYwUCudFJgBPlr+EoWC1OAY8xea8WIROd/PTU6tlpSN8Ac166io55bbJiiFtEif+YB0Rdt+J+JmhxjltBPGZ/nzq1IqZDn1fJhMfziVujSJ2V9h04iiehrmm31Iu4oQpu2amxfdZrne/NiKz9b+vWvhHkM0HwukYTK1DT2sczjnEjawg==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tneur-0000cT-7a for guix-patches@gnu.org; Thu, 27 Feb 2025 09:31:09 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 04/48] build-system/pyproject: Ignore unwanted pytest flags. 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Change-Id: Ib9f1602e5af11227e5b7ce124f0f9be4fa2b78e4 --- guix/build/pyproject-build-system.scm | 99 ++++++++++++++++++++++++++- 1 file changed, 96 insertions(+), 3 deletions(-) diff --git a/guix/build/pyproject-build-system.scm b/guix/build/pyproject-build-system.scm index 947d240114..2df9f2f479 100644 --- a/guix/build/pyproject-build-system.scm +++ b/guix/build/pyproject-build-system.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2021 Lars-Dominik Braun ;;; Copyright © 2022 Marius Bakke +;;; Copyright © 2024 Nicolas Graves ;;; ;;; This file is part of GNU Guix. ;;; @@ -35,7 +36,8 @@ (define-module (guix build pyproject-build-system) add-installed-pythonpath site-packages python-version - pyproject-build)) + pyproject-build + with-guix-pytest-plugin)) ;;; Commentary: ;;; @@ -142,7 +144,94 @@ (define* (build #:key outputs build-backend backend-path configure-flags #:allow wheel-dir config-settings))) -(define* (check #:key tests? test-backend test-flags #:allow-other-keys) +(define pytest-default-ignore-alist + '(("cov" . ("--cov" "--cov-reset" "--cov-report" "--cov-config" + "--no-cov-on-fail" "--no-cov" "--cov-fail-under" + "--cov-append" "--cov-branch" "--cov-context")) + ("mypy" . ("--mypy" "--mypy-config-file" "--mypy-ignore-missing-imports")) + ("isort" . ("--isort")) + ("flake8" . ("--flake8")) + ("black" . ("--black")) + ("flakes" . ("--flakes")) + ("pep8" . ("--pep8")))) + +(define (pytest-ignore-flags-plugin flags) + "This function converts an list of flags into a string that can + be instantiated as a python pytest plugin." + (format #f "\ +import pytest + +def pytest_addoption(parser): + group = parser.getgroup('guix','Guix ignored options') + options = [~{~s, ~}] + for option in options: + group.addoption(option, action='append', nargs='?')" + flags)) + +(define (call-with-guix-pytest-plugin inputs thunk) + "This function emulates command line options provided by pytest plugins in +the absence of the plugins defining these options. + +This is done by selecting absent plugins, gettings their flags defined in +PYTEST-DEFAULT-IGNORE-ALIST, and generating the plugin from there with +PYTEST-IGNORE-FLAGS-PLUGIN." + (let* ((former-path (getenv "PYTHONPATH")) + (input-names + (map car + (filter (match-lambda + ((name . _) + (if (string-prefix? "python-pytest-" name) + name + #f)) + ( _ #f)) + inputs))) + (filtered-flags + (filter identity + (append-map + (match-lambda + ((group . flags) + (if (member (string-append "python-pytest-" group) + input-names) + (list #f) + flags)) + (_ (list #f))) + pytest-default-ignore-alist))) + (dir (string-append + (if (access? (dirname (getcwd)) W_OK) + (dirname (getcwd)) + ;; fallback if we're already out-of-source + (getcwd)) + "/.guix-pytest"))) + (dynamic-wind + (lambda () + (setenv "PYTHONPATH" + (string-append + (if former-path + (string-append former-path ":") + "") + dir)) + (setenv "PYTEST_PLUGINS" + (string-append + (if (getenv "PYTEST_PLUGINS") + (string-append former-path ",") + "") + "pytest_guix_plugin")) + (mkdir-p dir) + (with-output-to-file (string-append dir "/__init__.py") + (lambda _ (display ""))) + (with-output-to-file (string-append dir "/pytest_guix_plugin.py") + (lambda _ + (display (pytest-ignore-flags-plugin filtered-flags))))) + thunk + (lambda () + (setenv "PYTHONPATH" former-path) + (unsetenv "PYTEST_PLUGINS"))))) + +(define-syntax-rule (with-guix-pytest-plugin inputs exp ...) + "Evaluate EXP in a context where the Guix pytest plugin is added." + (call-with-guix-pytest-plugin inputs (lambda () exp ...))) + +(define* (check #:key inputs tests? test-backend test-flags #:allow-other-keys) "Run the test suite of a given Python package." (if tests? ;; Unfortunately with PEP 517 there is no common method to specify test @@ -165,7 +254,8 @@ (define* (check #:key tests? test-backend test-flags #:allow-other-keys) (format #t "Using ~a~%" use-test-backend) (match use-test-backend ('pytest - (apply invoke pytest "-vv" test-flags)) + (with-guix-pytest-plugin inputs + (apply invoke pytest "-vv" test-flags))) ('nose (apply invoke nosetests "-v" test-flags)) ('nose2 @@ -386,3 +476,6 @@ (define* (pyproject-build #:key inputs (phases %standard-phases) (apply python:python-build #:inputs inputs #:phases phases args)) ;;; pyproject-build-system.scm ends here +;;; Local Variables: +;;; eval: (put 'with-guix-pytest-plugin 'scheme-indent-function 1) +;;; End: From patchwork Thu Feb 27 14:27:06 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39364 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id EEFAB27BBEC; Thu, 27 Feb 2025 14:37:11 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 0E56727BBE2 for ; Thu, 27 Feb 2025 14:37:11 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnex6-0003po-UI; Thu, 27 Feb 2025 09:33:29 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnewj-0002sp-39 for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:05 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnewi-0006Sx-8Q for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:04 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=QYOSJJDcDZlv0NYLDbVje3x6j7Cpj+qdnwBLiDxUMnY=; b=Thi/8Ri5h0D0VA0sUd4XGEj6oAg9UpO7dIbphjvLthG6qAyO00+V5QAC8G4cYFrfwkDwXCalK34YF4YA6J2FuJRu7BBKdQy2Ycpe9Y2qoUg66Xt2XjcpvWyWFOatGngm79GLkijJjcsYtGb+VABTp+FGtnHeBndiFT0L/P/qmRR6HvkzAgTt3/0CD2Y2T1/3cv9u2T2H0vRtuSBwCu38pt2cRG25CclV8oUmjawSKSoAXL23PhbimWJCNGXJJuOADxAXdi07mGjE80GFyql707m9J8RbdAM1Y3hTrP7xOdEsdf1JLAXTcf3q6P8F+VUxRE69/hpx7psmBkCrZT+S+w==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnewh-0000tE-VC for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:04 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 05/48] build-system/pyproject: Remove python-black inputs. 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The @@ -3172,8 +3168,7 @@ (define-public python-metacells python-scipy python-threadpoolctl python-umap-learn)) - (native-inputs (list python-black - python-bumpversion + (native-inputs (list python-bumpversion python-flake8 python-isort python-mypy @@ -3213,7 +3208,7 @@ (define-public python-ngesh (base32 "07sj4x95b5hvx57pw24f80sk4ag4hkg1z6wzym3pzi8n5gn85n1z")))) (build-system pyproject-build-system) (propagated-inputs (list python-ete3 python-numpy python-six)) - (native-inputs (list python-black python-flake8 python-pytest python-twine + (native-inputs (list python-flake8 python-pytest python-twine python-wheel)) (home-page "https://github.com/tresoldi/ngesh") (synopsis "Library for phylogenetic tree simulation") @@ -24057,8 +24052,7 @@ (define-public scvelo python-umap-learn pybind11)) (native-inputs - (list python-black - python-flake8 + (list python-flake8 python-hypothesis python-pytest python-setuptools-scm diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index 3f0a7435d5..fd77fa940c 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -5801,7 +5801,6 @@ (define-public datasette (native-inputs (list nss-certs-for-test python-beautifulsoup4 - python-black python-cogapp python-pip python-pytest diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm index bb1234ebd9..9805679597 100644 --- a/gnu/packages/finance.scm +++ b/gnu/packages/finance.scm @@ -1160,7 +1160,6 @@ (define-public python-trezor python-typing-extensions)) (native-inputs ; Only needed for running the tests (list protobuf - python-black python-isort python-pillow python-protobuf diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index f29a71c0d7..75ebbff2db 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -482,7 +482,6 @@ (define-public python-graphtools (native-inputs (list util-linux ;for lscpu python-anndata - python-black python-coverage python-coveralls python-nose diff --git a/gnu/packages/jupyter.scm b/gnu/packages/jupyter.scm index 6c2f549583..f47d8de295 100644 --- a/gnu/packages/jupyter.scm +++ b/gnu/packages/jupyter.scm @@ -1157,7 +1157,6 @@ (define-public python-papermill python-tenacity python-tqdm)) (native-inputs (list python-attrs - python-black python-boto3 python-botocore python-bumpversion diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index c051974244..8609ea81bf 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -229,8 +229,7 @@ (define-public python-funsor (propagated-inputs (list python-makefun python-multipledispatch python-numpy python-opt-einsum python-typing-extensions)) - (native-inputs (list python-black - python-flake8 + (native-inputs (list python-flake8 python-isort python-nbsphinx python-pandas @@ -2154,8 +2153,7 @@ (define-public python-imbalanced-learn (getcwd))))))) (propagated-inputs (list python-joblib python-numpy python-scikit-learn python-scipy python-threadpoolctl)) - (native-inputs (list python-black - python-flake8 + (native-inputs (list python-flake8 python-keras python-mypy python-pandas @@ -2594,8 +2592,7 @@ (define-public python-hyperopt python-six python-tqdm)) (native-inputs - (list python-black - python-nose + (list python-nose python-pymongo python-pytest python-wheel)) @@ -5325,7 +5322,6 @@ (define-public python-captum (list python-matplotlib python-numpy python-pytorch python-tqdm)) (native-inputs (list jupyter python-annoy - python-black python-flake8 python-flask python-flask-compress diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index ae6d40cec2..508b819cf9 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -888,8 +888,7 @@ (define-public python-scikit-survival python-scikit-learn python-scipy)) (native-inputs - (list python-black - python-pypa-build + (list python-pypa-build python-coverage python-cython-3 python-packaging diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 3ab0180fb3..17c36189f7 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -1604,8 +1604,7 @@ (define-public python-ovh (build-system pyproject-build-system) (arguments (list #:tests? #f)) ; XXX: tests require networking (propagated-inputs (list python-requests)) - (native-inputs (list python-black - python-coverage + (native-inputs (list python-coverage python-flake8 python-isort python-pytest @@ -3014,7 +3013,7 @@ (define-public python-openai and not test_file_cli"))) (propagated-inputs (list python-aiohttp python-requests python-tqdm python-typing-extensions)) - (native-inputs (list python-black python-pytest python-pytest-asyncio + (native-inputs (list python-pytest python-pytest-asyncio python-pytest-mock python-setuptools python-wheel)) (home-page "https://github.com/openai/openai-python") (synopsis "Python client library for the OpenAI API") @@ -10322,8 +10321,7 @@ (define-public python-starsessions python-itsdangerous python-starlette)) (native-inputs - (list python-black - python-flake8 + (list python-flake8 python-httpx python-mypy python-poetry-core diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 33e58fb205..e348dc9b6b 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -396,8 +396,7 @@ (define-public python-archspec python-scikit-learn python-tables python-typing-extensions)) - (native-inputs (list python-black - python-flake8 + (native-inputs (list python-flake8 python-isort python-poetry-core python-pylint @@ -8879,8 +8878,7 @@ (define-public python-pydantic-cli (propagated-inputs (list python-pydantic)) (native-inputs - (list python-black - python-mypy + (list python-mypy python-pytest)) (home-page "https://github.com/mpkocher/pydantic-cli") (synopsis "Turn Pydantic defined data models into CLI tools") @@ -12028,8 +12026,7 @@ (define-public python-imageio (propagated-inputs (list python-imageio-ffmpeg python-numpy python-pillow python-tifffile)) (native-inputs - (list python-black - python-flake8 + (list python-flake8 python-fsspec python-pytest python-pytest-cov @@ -17596,7 +17593,6 @@ (define-public python-get-version (propagated-inputs (list python-pygments python-pytest - python-pytest-black python-pytest-cov python-setuptools python-testpath)) @@ -23847,8 +23843,7 @@ (define-public ptpython (arguments `(#:tests? #f)) ;there are no tests (propagated-inputs - (list python-appdirs python-black python-jedi python-prompt-toolkit - python-pygments)) + (list python-appdirs python-jedi python-prompt-toolkit python-pygments)) (home-page "https://github.com/jonathanslenders/ptpython") (synopsis "Python Read-Eval-Print-Loop with nice IDE-like features") (description @@ -29234,7 +29229,7 @@ (define-public python-update-checker (base32 "04yb5a9mi45ax50m2m0ih6gdvkk1j7gfmy83dd58i1f59axlabba")))) (build-system python-build-system) (propagated-inputs (list python-requests)) - (native-inputs (list python-black python-flake8 python-pytest)) + (native-inputs (list python-flake8 python-pytest)) (home-page "https://github.com/bboe/update_checker") (synopsis "Python module that will check for package updates") (description "This package provides a Python module that will check for @@ -33566,8 +33561,7 @@ (define-public python-eliot (propagated-inputs (list python-boltons python-orjson python-pyrsistent python-zope-interface)) (native-inputs - (list python-black - python-coverage + (list python-coverage python-flake8 python-hypothesis python-pytest @@ -36878,7 +36872,6 @@ (define-public python-minikanren python-pytest python-pytest-cov python-pylint - python-black python-sympy python-versioneer python-coverage)) diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm index 9ab65e6c6c..cc0346297e 100644 --- a/gnu/packages/virtualization.scm +++ b/gnu/packages/virtualization.scm @@ -2987,8 +2987,7 @@ (define-public python-transient (("==") ">="))))))) (native-inputs - (list python-black - python-mypy + (list python-mypy python-pyhamcrest python-setuptools python-twine From patchwork Thu Feb 27 14:27:07 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39362 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5722027BBEA; Thu, 27 Feb 2025 14:36:40 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,TVD_SPACE_RATIO,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 5E41927BBE2 for ; Thu, 27 Feb 2025 14:36:39 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnex9-00048u-Rl; Thu, 27 Feb 2025 09:33:32 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnewl-000385-0e for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:07 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnewk-0006Ta-M5 for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:06 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=1IPwpQlUfPn1nw4ktLGrGoet4I4X9okSTZjj4jp2rlQ=; b=Syw8AxfP3twbZvFucBHrObuAQjBhddtCPMV6x/E6CYqpdfiyi7YieJ+P+83gfitOyX96187bDBZOr+iSnQNqaQRRjxb9az+pSq1GPkF4SYGXqY1eurj7VET9i3ww2+/sqjtsAXMrlNjYuEqflOC+6zW73Nz8ZgE00lQsXh0tYnTuHVdnJc3G2wEbdUs9X8jijZMvZOtzgZ8DTVfGw6i010gaBdgfq6NQAGjXDfLxQPi7EBNNQWE5Yxt4zODV7rSTZCDy/YAeDPGUT5ggo1ajRkHeBtq8oJ27fhJGzVVuW9R+eHe43xpg788fJi4eaEe4Zuksep9OgClod2voQOrilQ==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnewk-0000td-Cz for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:06 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 06/48] build-system/pyproject: Remove python-pylint native-input. 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gnu/packages/games.scm | 1 - gnu/packages/machine-learning.scm | 3 +-- gnu/packages/potassco.scm | 3 +-- gnu/packages/python-xyz.scm | 5 ----- gnu/packages/syndication.scm | 2 -- gnu/packages/terminals.scm | 3 --- gnu/packages/virtualization.scm | 1 - 8 files changed, 2 insertions(+), 17 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 00dc20e8b6..1a0ae8918e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3174,7 +3174,6 @@ (define-public python-metacells python-mypy python-mypy-extensions python-pandas-stubs - python-pylint python-pytest python-pytest-cov python-setuptools diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 546c513de0..47566c8df1 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -7856,7 +7856,6 @@ (define-public open-adventure cppcheck libedit pkg-config - python-pylint python-pyyaml python-wrapper) (if (supported-package? ruby-asciidoctor) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 8609ea81bf..480e534823 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -379,8 +379,7 @@ (define-public python-ml-collections #:test-flags '(list "--pyargs" "ml_collections/config_dict/tests"))) (propagated-inputs (list python-absl-py python-pyyaml)) - (native-inputs (list python-pylint - python-pytest + (native-inputs (list python-pytest python-pytest-xdist python-flit-core)) (home-page "https://github.com/google/ml_collections") diff --git a/gnu/packages/potassco.scm b/gnu/packages/potassco.scm index 43e56ec8bf..7c3fe2e309 100644 --- a/gnu/packages/potassco.scm +++ b/gnu/packages/potassco.scm @@ -697,8 +697,7 @@ (define-public python-clingraph python-jsonschema python-networkx python-setuptools)) - (native-inputs (list dot2tex graphviz python-pylint python-pytest - python-wheel)) + (native-inputs (list dot2tex graphviz python-pytest python-wheel)) (home-page "https://github.com/potassco/clingraph") (synopsis "Visualizer for graphs defined as logic programs") (description diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index e348dc9b6b..f2c5f7fa63 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -399,7 +399,6 @@ (define-public python-archspec (native-inputs (list python-flake8 python-isort python-poetry-core - python-pylint python-pytest python-pytest-cov)) (home-page "https://github.com/archspec/archspec") @@ -5107,7 +5106,6 @@ (define-public python-mediapy python-pillow)) (native-inputs (list python-flit-core - python-pylint python-pytest python-pytest-xdist)) (home-page "https://github.com/google/mediapy") @@ -8706,7 +8704,6 @@ (define-public python-lsp-jsonrpc (list python-coverage python-pycodestyle python-pyflakes - python-pylint python-pytest python-pytest-cov python-setuptools @@ -9082,7 +9079,6 @@ (define-public python-lsp-server python-matplotlib python-numpy python-pandas - python-pylint python-pytest python-rope python-setuptools @@ -36871,7 +36867,6 @@ (define-public python-minikanren python-pydocstyle python-pytest python-pytest-cov - python-pylint python-sympy python-versioneer python-coverage)) diff --git a/gnu/packages/syndication.scm b/gnu/packages/syndication.scm index f717cbb3af..fc563a657f 100644 --- a/gnu/packages/syndication.scm +++ b/gnu/packages/syndication.scm @@ -501,7 +501,6 @@ (define-public rtv python-coveralls python-coverage python-mock - python-pylint python-pytest python-vcrpy)) (home-page "https://github.com/michael-lazar/rtv") @@ -545,7 +544,6 @@ (define-public tuir (list python-coverage python-coveralls python-mock - python-pylint python-pytest python-setuptools python-vcrpy diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm index 9fdd378cf2..b9dd12803d 100644 --- a/gnu/packages/terminals.scm +++ b/gnu/packages/terminals.scm @@ -1178,7 +1178,6 @@ (define-public python-halo (native-inputs (list python-coverage python-nose - python-pylint python-setuptools python-tox python-twine @@ -1211,7 +1210,6 @@ (define-public python-log-symbols (native-inputs (list python-coverage python-nose - python-pylint python-setuptools python-tox python-wheel)) @@ -1245,7 +1243,6 @@ (define-public python-spinners (native-inputs (list python-coverage python-nose - python-pylint python-setuptools python-tox python-wheel)) diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm index cc0346297e..bde357763f 100644 --- a/gnu/packages/virtualization.scm +++ b/gnu/packages/virtualization.scm @@ -2121,7 +2121,6 @@ (define-public python-qemu-qmp (list python-avocado-framework python-flake8 python-isort - python-pylint python-setuptools python-setuptools-scm python-wheel)) From patchwork Thu Feb 27 14:27:08 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39371 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 92D1427BBEC; Thu, 27 Feb 2025 14:37:43 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 6C3E227BBE2 for ; Thu, 27 Feb 2025 14:37:42 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnexH-0004Yy-O9; Thu, 27 Feb 2025 09:33:40 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnewn-0003Uc-QC for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:11 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnewn-0006Tv-Dz for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:09 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=Pqabg4QwCBkXbpelcVFZBoj3o+XRGZi8GJAS6Cxmudc=; b=SZadJiyam9gaZjHsRyelkHEphR5k6eEblycaivvoGtnXIFfdFSlOeeZG5fJplHY1nUBoPBMrG+dAGv4UkXe1RH/rmlQigKxuI5RHretWDH/eBmueSadIRWVvkr2uDG+pJ25dGmuIDeSia5KoFcQxNSJ7tlVodEmPPuIq+rlUW8hS9dtQBEALoUWA9N68ZGskzgz3Ot6AnMLakkW30gTl8hC2CTpDDpLirvT44zTa/IZIlqSGRKneXSloZR02ZrU1isziNnl65nIbXococIOb+Nhm5SR97/zmglXQ55AnDtXqlgu96bFgGI+pKCJN+59uCjCeOUpyGMz26AHLuAfX2w==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnewm-0000tz-6T for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:08 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 07/48] build-system/pyproject: Remove python-flake8 inputs. 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bh=Pqabg4QwCBkXbpelcVFZBoj3o+XRGZi8GJAS6Cxmudc=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1740666651; v=1; b=eaVgj0oHKkKcg63cdANwDGm+WsqItEGBAp0PdGY6/hojNzFzFX6UQfsj19r3ELzdriUiIOfZ Ha3EUuh2ucXmzbZB+tAemhWvUypfh1tJE6z9PbMT9uJ4WU++NREDQL9zeRyZ4bYQOkTdWGm8TiF 0CNXiiB2NfORqsUQazQoVPxSXdy78mciTccyF3vxJJRTrqlC1YpTvElJPkRkuxzHa6EAQXoHgkj Eq32/TRbY+urHTH9DRQavglNP2GnlbnMrt8jRa5vlxZ3Kpdk9U6fw9opT8j2xTZ4KuIPN2EBhYa h27yB5W2YuRw6XoQW36UlC1XF++MUmVAatcD9/pWZxRuQ== X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-to: Nicolas Graves X-ACL-Warn: , Nicolas Graves via Guix-patches X-Patchwork-Original-From: Nicolas Graves via Guix-patches via From: Nicolas Graves Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (python-doubletdetection, python-biom-format, python-metacells, python-ngesh) * gnu/packages/ebook.scm (calibre) * gnu/packages/engineering.scm (python-scikit-rf) * gnu/packages/finance.scm (python-mt-940) * gnu/packages/geo.scm (python-geopy) * gnu/packages/gettext.scm (python-mdpo) * gnu/packages/graph.scm (python-pygsp) * gnu/packages/graphviz.scm (python-uqbar) * gnu/packages/machine-learning.scm (python-funsor, python-imbalanced-learn, python-captum, python-pymanopt, python-pyro-api, python-pyro-ppl, python-linear-operator, python-gpytorch) * gnu/packages/python-web.scm (python-ovh, python-furl, python-httplib2, python-http-ece, python-woob, python-starsessions-for-pytorch-lightning) * gnu/packages/python-xyz.scm (python-archspec, python-colorful, python-pymd4c, python-flasgger, python-imageio, python-importlib-ressources, python-seaborn, python-inflect, python-yq, python-update-checker, python-eliot, python-dateparser, python-jinja2-cli, python-verspec, python-mike, python-simple-websocket) * gnu/packages/simulation.scm (python-dolfin-adjoint) * gnu/packages/statistics.scm (python-statsmodels) * gnu/packages/vpn.scm (sshuttle) * gnu/packages/wm.scm (qtile) * gnu/packages/textutils.scm (python-panflute) [native-inputs]: Remove python-flake8. * gnu/packages/music.scm (python-mutagen): [arguments]<#:test-flags>: Ignore flake8 quality tests. [native-inputs]: Remove python-flake8. * gnu/packages/protobuf.scm (python-pure-protobuf): [arguments]<#:phases>: Remove flake8 invocation from check phase. [native-inputs]: Remove python-flake8. --- gnu/packages/bioinformatics.scm | 10 +++------- gnu/packages/ebook.scm | 1 - gnu/packages/engineering.scm | 1 - gnu/packages/finance.scm | 4 +--- gnu/packages/gettext.scm | 1 - gnu/packages/graph.scm | 3 +-- gnu/packages/graphviz.scm | 1 - gnu/packages/machine-learning.scm | 15 ++++----------- gnu/packages/music.scm | 4 ++-- gnu/packages/protobuf.scm | 4 +--- gnu/packages/python-web.scm | 15 ++++----------- gnu/packages/python-xyz.scm | 31 ++++++++++++------------------- gnu/packages/simulation.scm | 1 - gnu/packages/statistics.scm | 1 - gnu/packages/textutils.scm | 1 - gnu/packages/vpn.scm | 1 - gnu/packages/wm.scm | 1 - 17 files changed, 28 insertions(+), 67 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1a0ae8918e..bda5ab3a8f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2824,8 +2824,7 @@ (define-public python-doubletdetection python-scipy python-tqdm)) (native-inputs - (list python-flake8 - python-poetry-core + (list python-poetry-core python-pytest)) (home-page "https://github.com/JonathanShor/DoubletDetection") (synopsis @@ -3169,7 +3168,6 @@ (define-public python-metacells python-threadpoolctl python-umap-learn)) (native-inputs (list python-bumpversion - python-flake8 python-isort python-mypy python-mypy-extensions @@ -3207,7 +3205,7 @@ (define-public python-ngesh (base32 "07sj4x95b5hvx57pw24f80sk4ag4hkg1z6wzym3pzi8n5gn85n1z")))) (build-system pyproject-build-system) (propagated-inputs (list python-ete3 python-numpy python-six)) - (native-inputs (list python-flake8 python-pytest python-twine + (native-inputs (list python-pytest python-twine python-wheel)) (home-page "https://github.com/tresoldi/ngesh") (synopsis "Library for phylogenetic tree simulation") @@ -3923,7 +3921,6 @@ (define-public python-biom-format (propagated-inputs (list python-anndata python-click - python-flake8 python-future python-h5py python-numpy @@ -24051,8 +24048,7 @@ (define-public scvelo python-umap-learn pybind11)) (native-inputs - (list python-flake8 - python-hypothesis + (list python-hypothesis python-pytest python-setuptools-scm python-wheel)) diff --git a/gnu/packages/ebook.scm b/gnu/packages/ebook.scm index 46ec951916..75e14801dd 100644 --- a/gnu/packages/ebook.scm +++ b/gnu/packages/ebook.scm @@ -156,7 +156,6 @@ (define-public calibre (native-inputs (list bash-minimal pkg-config - python-flake8 python-pyqt-builder qtbase-5 ; for qmake xdg-utils)) diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index 8ca3b87ff2..3882a35d6b 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -2965,7 +2965,6 @@ (define-public python-scikit-rf python-qtpy python-scipy)) (native-inputs (list python-coverage - python-flake8 python-nbval python-networkx python-pytest diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm index 9805679597..f3be674c01 100644 --- a/gnu/packages/finance.scm +++ b/gnu/packages/finance.scm @@ -2310,9 +2310,7 @@ (define-public python-mt-940 ;; Remove custom --cov flags. (delete-file "pytest.ini") (invoke "pytest" "-vv"))))))) - (native-inputs (list python-flake8 - python-pytest - python-pyyaml)) + (native-inputs (list python-pytest python-pyyaml)) (home-page "https://mt940.readthedocs.io/") (synopsis "Python parser for MT940-encoded SWIFT data") (description diff --git a/gnu/packages/gettext.scm b/gnu/packages/gettext.scm index 7862c296bd..29cdbab915 100644 --- a/gnu/packages/gettext.scm +++ b/gnu/packages/gettext.scm @@ -226,7 +226,6 @@ (define-public mdpo (build-system python-build-system) (native-inputs (list python-bump2version - python-flake8 python-flake8-implicit-str-concat python-flake8-print python-isort diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index 75ebbff2db..57c4bd05ed 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -570,8 +570,7 @@ (define-public python-pygsp ""))))))) (propagated-inputs (list python-numpy python-scikit-image python-scipy)) (native-inputs - (list python-coverage python-coveralls python-flake8 - python-pytest)) + (list python-coverage python-coveralls python-pytest)) (home-page "https://github.com/epfl-lts2/pygsp") (synopsis "Graph Signal Processing in Python") (description "The PyGSP is a Python package to ease signal processing on diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm index defd53df73..0d3db31212 100644 --- a/gnu/packages/graphviz.scm +++ b/gnu/packages/graphviz.scm @@ -224,7 +224,6 @@ (define-public python-uqbar and not test_sphinx_book_text_broken_strict"))) (native-inputs (list graphviz - python-flake8 python-isort python-mypy python-pytest diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 480e534823..65cb08e2f3 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -229,8 +229,7 @@ (define-public python-funsor (propagated-inputs (list python-makefun python-multipledispatch python-numpy python-opt-einsum python-typing-extensions)) - (native-inputs (list python-flake8 - python-isort + (native-inputs (list python-isort python-nbsphinx python-pandas python-pillow @@ -1143,7 +1142,6 @@ (define-public python-pymanopt ((",!=1.12\\.\\*") ""))))))) (propagated-inputs (list python-numpy python-scipy)) (native-inputs (list python-autograd - python-flake8 python-flake8-bugbear python-isort python-matplotlib @@ -2152,8 +2150,7 @@ (define-public python-imbalanced-learn (getcwd))))))) (propagated-inputs (list python-joblib python-numpy python-scikit-learn python-scipy python-threadpoolctl)) - (native-inputs (list python-flake8 - python-keras + (native-inputs (list python-keras python-mypy python-pandas python-pytest @@ -5321,7 +5318,6 @@ (define-public python-captum (list python-matplotlib python-numpy python-pytorch python-tqdm)) (native-inputs (list jupyter python-annoy - python-flake8 python-flask python-flask-compress python-ipython @@ -5842,8 +5838,7 @@ (define-public python-pyro-api (build-system python-build-system) (arguments '(#:tests? #false)) ;requires pyro (native-inputs - (list python-flake8 - python-ipython + (list python-ipython python-pytest python-sphinx python-sphinx-rtd-theme)) @@ -5900,8 +5895,7 @@ (define-public python-linear-operator python-pytorch python-scipy python-typeguard)) - (native-inputs (list python-flake8 - python-flake8-print + (native-inputs (list python-flake8-print python-pytest python-setuptools python-setuptools-scm @@ -5932,7 +5926,6 @@ (define-public python-gpytorch python-scikit-learn python-scipy)) (native-inputs (list python-coverage - python-flake8 python-flake8-print python-nbval python-pytest diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index bf47489d34..7d28ef4b58 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -4116,6 +4116,7 @@ (define-public python-mutagen (build-system pyproject-build-system) (arguments (list + #:test-flags '(list "--ignore=tests/quality/test_flake8.py") #:phases #~(modify-phases %standard-phases (add-before 'check 'remove-hypothesis-deadlines @@ -4126,8 +4127,7 @@ (define-public python-mutagen (("( +)@given" all spaces) (string-append spaces "@settings(deadline=None)\n" all)))))))) (native-inputs - (list python-flake8 - python-hypothesis + (list python-hypothesis python-pytest python-setuptools python-wheel)) diff --git a/gnu/packages/protobuf.scm b/gnu/packages/protobuf.scm index 9d81b1c508..203e4909d6 100644 --- a/gnu/packages/protobuf.scm +++ b/gnu/packages/protobuf.scm @@ -502,7 +502,7 @@ (define-public python-pure-protobuf (base32 "15dp5pvazd0jx4wzzh79080ah7hkpd3axh40al9vhzs2hf3v90hx")))) (build-system python-build-system) (native-inputs - (list python-flake8 python-pytest python-pytest-cov python-isort)) + (list python-pytest python-pytest-cov python-isort)) (arguments `(#:phases (modify-phases %standard-phases @@ -510,8 +510,6 @@ (define-public python-pure-protobuf (lambda _ (invoke "pytest" "--cov-report" "term-missing" "--cov" "pure_protobuf") - (invoke "flake8" "pure_protobuf" "tests" - "--ignore=F541") (invoke "isort" "-rc" "-c" "pure_protobuf" "tests")))))) (home-page "https://pypi.org/project/pure-protobuf/") (synopsis "Protobuf implementation using dataclasses") diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 17c36189f7..c654f3f13d 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -1605,7 +1605,6 @@ (define-public python-ovh (arguments (list #:tests? #f)) ; XXX: tests require networking (propagated-inputs (list python-requests)) (native-inputs (list python-coverage - python-flake8 python-isort python-pytest python-pytest-cov @@ -1921,8 +1920,6 @@ (define-public python-furl (build-system python-build-system) (propagated-inputs (list python-six python-orderedmultidict)) - (native-inputs - (list python-flake8)) (home-page "https://github.com/gruns/furl") (synopsis "URL manipulation in Python") (description "Furl provides an easy-to-use alternative to the @@ -1955,7 +1952,6 @@ (define-public python-httplib2 (("==") ">="))))))) (native-inputs (list python-cryptography - python-flake8 python-future python-mock python-pytest @@ -8583,7 +8579,7 @@ (define-public python-http-ece (propagated-inputs (list python-cryptography)) (native-inputs - (list python-coverage python-flake8 python-mock python-nose)) + (list python-coverage python-mock python-nose)) (home-page "https://github.com/web-push-libs/encrypted-content-encoding") (synopsis "Encrypted Content Encoding for HTTP") (description @@ -9048,8 +9044,7 @@ (define-public python-simple-websocket ;; Requires Internet access to resolve example.com (list #:test-flags '(list "--ignore=tests/test_client.py"))) (propagated-inputs (list python-wsproto)) - (native-inputs (list python-flake8 - python-pytest + (native-inputs (list python-pytest python-pytest-cov python-setuptools python-tox @@ -9660,8 +9655,7 @@ (define-public python-woob python-six python-unidecode)) (native-inputs - (list python-coverage python-flake8 python-nose python-selenium - python-xunitparser)) + (list python-coverage python-nose python-selenium python-xunitparser)) (home-page "https://woob.tech/") (synopsis "Woob, Web Outside Of Browsers") (description "Woob is a collection of applications able to interact with @@ -10321,8 +10315,7 @@ (define-public python-starsessions python-itsdangerous python-starlette)) (native-inputs - (list python-flake8 - python-httpx + (list python-httpx python-mypy python-poetry-core python-pytest diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index f2c5f7fa63..52f7ebde3f 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -396,8 +396,7 @@ (define-public python-archspec python-scikit-learn python-tables python-typing-extensions)) - (native-inputs (list python-flake8 - python-isort + (native-inputs (list python-isort python-poetry-core python-pytest python-pytest-cov)) @@ -1555,8 +1554,7 @@ (define-public python-colorful (base32 "0kyy9qhvrb5m9h8xmri7c88i0k1g5qc7017anw39gx44an7mn33y")))) (build-system pyproject-build-system) (native-inputs - (list python-coverage python-flake8 python-pytest python-setuptools - python-wheel)) + (list python-coverage python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-colorama)) (home-page "http://github.com/timofurrer/colorful") @@ -2926,7 +2924,7 @@ (define-public python-pymd4c (inputs (list md4c)) (native-inputs - (list python-flake8 python-pkgconfig pkg-config)) + (list python-pkgconfig pkg-config)) (home-page "https://github.com/dominickpastore/pymd4c") (synopsis "Python bindings for MD4C") (description @@ -12022,8 +12020,7 @@ (define-public python-imageio (propagated-inputs (list python-imageio-ffmpeg python-numpy python-pillow python-tifffile)) (native-inputs - (list python-flake8 - python-fsspec + (list python-fsspec python-pytest python-pytest-cov python-setuptools @@ -12837,8 +12834,7 @@ (define-public python-importlib-resources (setenv "PYTHONPATH" (string-append (getcwd) "/_custom_build"))))))) (native-inputs - (list python-flake8 - python-pytest + (list python-pytest python-pytest-black python-pytest-checkdocs python-pytest-cov @@ -15110,8 +15106,7 @@ (define-public python-seaborn python-scipy python-statsmodels)) (native-inputs - (list python-flake8 - python-flit-core + (list python-flit-core python-ipykernel python-nbconvert python-numpydoc @@ -28217,7 +28212,7 @@ (define-public python-yq (inputs (list python-argcomplete python-pyyaml python-xmltodict python-toml jq)) (native-inputs - (list python-coverage python-flake8 python-setuptools-scm python-wheel)) + (list python-coverage python-setuptools-scm python-wheel)) (home-page "https://github.com/kislyuk/yq") (synopsis "Command-line YAML/XML processor") (description @@ -29225,7 +29220,7 @@ (define-public python-update-checker (base32 "04yb5a9mi45ax50m2m0ih6gdvkk1j7gfmy83dd58i1f59axlabba")))) (build-system python-build-system) (propagated-inputs (list python-requests)) - (native-inputs (list python-flake8 python-pytest)) + (native-inputs (list python-pytest)) (home-page "https://github.com/bboe/update_checker") (synopsis "Python module that will check for package updates") (description "This package provides a Python module that will check for @@ -33558,7 +33553,6 @@ (define-public python-eliot (list python-boltons python-orjson python-pyrsistent python-zope-interface)) (native-inputs (list python-coverage - python-flake8 python-hypothesis python-pytest python-pytest-xdist @@ -34346,7 +34340,7 @@ (define-public python-dateparser (list python-dateutil python-pytz python-regex python-ruamel.yaml python-tzlocal)) (native-inputs - (list python-flake8 python-pytest python-parameterized tzdata-for-tests + (list python-pytest python-parameterized tzdata-for-tests python-setuptools python-wheel)) (arguments `(#:phases @@ -35772,8 +35766,7 @@ (define-public python-jinja2-cli (propagated-inputs (list python-jinja2)) (native-inputs - (list python-flake8 - python-jinja2 + (list python-jinja2 python-pytest python-setuptools python-wheel)) @@ -38326,7 +38319,7 @@ (define-public python-verspec (base32 "07n06wv85fm4vl1ird2mja0823js3x322wgs9gdnq1djjyk4ql64")))) (build-system python-build-system) - (native-inputs (list python-coverage python-flake8 python-mypy + (native-inputs (list python-coverage python-mypy python-pretend python-pytest)) (arguments `(#:phases (modify-phases %standard-phases @@ -38763,7 +38756,7 @@ (define-public python-mike "0yxp816x7s948xsd0fifvq9shg01xdxlifd9rzf5y2rd9iwz3hsn")))) (build-system python-build-system) (native-inputs - (list python-coverage python-flake8 python-shtab)) + (list python-coverage python-shtab)) (propagated-inputs (list python-jinja2 python-mkdocs python-pyyaml python-verspec)) (home-page "https://github.com/jimporter/mike") diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index 3af29aeeaa..1eed4fd180 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -1252,7 +1252,6 @@ (define-public python-dolfin-adjoint (list pkg-config python-coverage python-decorator - python-flake8 python-pkgconfig python-pytest)) (propagated-inputs diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index ceca13084e..58975e652f 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2670,7 +2670,6 @@ (define-public python-statsmodels (native-inputs (list python-colorama python-cython - python-flake8 python-isort python-joblib python-matplotlib diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm index c886b009be..1bdd58269c 100644 --- a/gnu/packages/textutils.scm +++ b/gnu/packages/textutils.scm @@ -1758,7 +1758,6 @@ (define-public python-panflute (propagated-inputs (list python-click python-pyyaml)) (native-inputs (list python-configparser python-coverage - python-flake8 python-pandocfilters python-pytest python-pytest-cov diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm index 0b62e8c7cf..53706a8de1 100644 --- a/gnu/packages/vpn.scm +++ b/gnu/packages/vpn.scm @@ -1034,7 +1034,6 @@ (define (install-man-page file) (native-inputs (list python-setuptools-scm ;; For tests only. - python-flake8 python-mock python-poetry-core python-pytest-cov diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm index 0e6153d7bd..8d1bce1009 100644 --- a/gnu/packages/wm.scm +++ b/gnu/packages/wm.scm @@ -864,7 +864,6 @@ (define-public qtile python-xcffib)) (native-inputs (list pkg-config - python-flake8 python-pep8-naming python-pytest python-pytest-cov From patchwork Thu Feb 27 14:27:09 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39359 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 562CB27BBE9; Thu, 27 Feb 2025 14:35:40 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.3 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED,URIBL_SBL_A autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id C804E27BBE2 for ; Thu, 27 Feb 2025 14:35:37 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnexL-0004nn-5I; Thu, 27 Feb 2025 09:33:43 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnewq-0003g7-GY for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:14 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnewp-0006Ub-Ko for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:11 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=e2XOcfqtFvSNvLpJvt3NFiKBNYYoR8f0zDCzOtzVt2g=; b=umkgepu+wBjflWafwRHMkuil3IUpJmjSPwu/AO+3WuR44ndcZRL5DI2Sm12QBDN609xgb6qn8o+wnz7t2Fi0AL9kmK0th+8P7e0MeT3l45yo5qOI+9gwS7NDtGFPN9JD3TPMDw1yI5RLY5YrYjrgjQ2/sVgi+I/3+X/mmp+eUKJIIqSj9VRjSGFgau2BkLWp9B/5kTmje4uhCwV2QiMFmtDo2DLnlY9T0Og5RlsV7sshKar0whDvNfjsBI7fX8MBWjiaqsxiOdluBcnqA5iRuJKQIysNIAR+0ncrU+ObaeGYKyRlyRiSpflmT1py4AUZHUs3inPRoXfUt0aglG0ZUw==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnewp-0000ub-EN for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:11 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 08/48] build-system/pyproject: Remove python-coverage input. 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[arguments]<#:phases>: Adapt 'check phase replacement. --- gnu/packages/android.scm | 6 ++-- gnu/packages/astronomy.scm | 6 ++-- gnu/packages/bioinformatics.scm | 8 ++--- gnu/packages/check.scm | 7 ++-- gnu/packages/cpp.scm | 3 +- gnu/packages/django.scm | 3 +- gnu/packages/engineering.scm | 3 +- gnu/packages/gpodder.scm | 3 +- gnu/packages/graph.scm | 3 +- gnu/packages/jupyter.scm | 2 +- gnu/packages/machine-learning.scm | 12 ++----- gnu/packages/music.scm | 3 +- gnu/packages/package-management.scm | 6 ++-- gnu/packages/python-check.scm | 2 +- gnu/packages/python-compression.scm | 14 +++----- gnu/packages/python-web.scm | 18 ++++------ gnu/packages/python-xyz.scm | 55 ++++++++++------------------- gnu/packages/simulation.scm | 1 - gnu/packages/statistics.scm | 6 ++-- gnu/packages/syndication.scm | 4 +-- gnu/packages/terminals.scm | 9 ++--- gnu/packages/textutils.scm | 1 - gnu/packages/version-control.scm | 1 - gnu/packages/web.scm | 1 - gnu/packages/xml.scm | 2 +- 25 files changed, 59 insertions(+), 120 deletions(-) diff --git a/gnu/packages/android.scm b/gnu/packages/android.scm index bafca18abe..58d3815d2a 100644 --- a/gnu/packages/android.scm +++ b/gnu/packages/android.scm @@ -1076,11 +1076,9 @@ (define-public python-androguard (replace 'check ;; Adapted from .travis.yml (lambda _ - (invoke "nosetests" "--with-coverage" "--with-timer" - "--timer-top-n" "50")))))) + (invoke "nosetests" "--with-timer" "--timer-top-n" "50")))))) (native-inputs - (list python-codecov python-coverage python-mock python-nose - python-nose-timer)) + (list python-codecov python-mock python-nose python-nose-timer)) (propagated-inputs (list python-asn1crypto python-colorama diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index a3aedac986..8c47e7c61c 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -1729,8 +1729,7 @@ (define-public python-asdf-astropy (add-before 'check 'set-home-env (lambda _ (setenv "HOME" "/tmp")))))) (native-inputs - (list python-coverage - python-h5py + (list python-h5py python-pandas python-pytest python-pytest-astropy @@ -4630,8 +4629,7 @@ (define-public python-poliastro (lambda _ (setenv "HOME" "/tmp")))))) (native-inputs - (list python-coverage - python-hypothesis + (list python-hypothesis python-mypy python-flit-core python-pytest diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index bda5ab3a8f..12a18cbf80 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3701,8 +3701,7 @@ (define-public python-ega-download-client (propagated-inputs (list python-htsget python-psutil python-requests python-tqdm python-urllib3)) (native-inputs - (list python-coverage - python-mock + (list python-mock python-pyfakefs python-pytest python-responses @@ -6462,7 +6461,7 @@ (define-public python-scikit-bio python-requests python-scipy)) (native-inputs - (list python-coverage python-pytest)) + (list python-pytest)) (home-page "https://scikit-bio.org") (synopsis "Data structures, algorithms and educational resources for bioinformatics") (description @@ -19937,8 +19936,7 @@ (define-public python-cooler python-scipy python-simplejson)) (native-inputs - (list python-coverage - python-hatchling + (list python-hatchling python-isort python-pytest python-pytest-cov)) diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm index baa3a2f4c3..4263329559 100644 --- a/gnu/packages/check.scm +++ b/gnu/packages/check.scm @@ -1972,8 +1972,7 @@ (define-public python-pytest-randomly "not reordered " "and not test_it_runs_before_stepwise " "and not test_entrypoint_injection")))))))) - (native-inputs (list python-coverage - python-factory-boy + (native-inputs (list python-factory-boy python-faker python-numpy python-pytest-xdist)) @@ -3162,7 +3161,7 @@ (define-public python-pytest-flakes #:test-flags '(list "-k" "not test_syntax_error"))) (native-inputs - (list python-coverage python-pytest python-setuptools python-wheel)) + (list python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-pyflakes)) (home-page "https://github.com/fschulze/pytest-flakes") @@ -4194,7 +4193,7 @@ (define-public python-aiounittest #t))))) (propagated-inputs (list python-wrapt)) (native-inputs - (list python-coverage python-nose)) + (list python-nose)) (home-page "https://github.com/kwarunek/aiounittest") (synopsis "Test asyncio code more easily") diff --git a/gnu/packages/cpp.scm b/gnu/packages/cpp.scm index a456bf3b51..21aa13b73c 100644 --- a/gnu/packages/cpp.scm +++ b/gnu/packages/cpp.scm @@ -1399,8 +1399,7 @@ (define-public cpplint (setenv "GUIX_PYTHONPATH" (getenv "TMP_PYTHONPATH"))))))) (native-inputs - (list python-coverage - python-pytest + (list python-pytest python-pytest-cov python-pytest-runner python-setuptools diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm index cb9df0d2df..1a66dc8b0b 100644 --- a/gnu/packages/django.scm +++ b/gnu/packages/django.scm @@ -510,8 +510,7 @@ (define-public python-django-haystack (list python-django python-packaging)) ;; (inputs (list gdal)) ; it's optional, tests fail when provided (native-inputs - (list python-coverage - python-dateutil + (list python-dateutil python-geopy python-pysolr python-requests diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index 3882a35d6b..cc84a760e9 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -2964,8 +2964,7 @@ (define-public python-scikit-rf python-pyqtgraph python-qtpy python-scipy)) - (native-inputs (list python-coverage - python-nbval + (native-inputs (list python-nbval python-networkx python-pytest python-pytest-cov diff --git a/gnu/packages/gpodder.scm b/gnu/packages/gpodder.scm index c3e1c9b496..57e14ee93f 100644 --- a/gnu/packages/gpodder.scm +++ b/gnu/packages/gpodder.scm @@ -65,7 +65,6 @@ (define-public gpodder (build-system python-build-system) (native-inputs (list intltool - python-coverage python-minimock python-pytest python-pytest-cov @@ -169,7 +168,7 @@ (define-public python-mygpoclient "05hmjdb73m7vl6lzvh58bnliy4227pv8hprwfka0bg19cnvgpyf5")))) (build-system python-build-system) (native-inputs - (list python-coverage python-minimock python-nose python-pytest)) + (list python-minimock python-nose python-pytest)) (arguments '(#:phases (modify-phases %standard-phases diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index 57c4bd05ed..a11667b678 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -482,7 +482,6 @@ (define-public python-graphtools (native-inputs (list util-linux ;for lscpu python-anndata - python-coverage python-coveralls python-nose python-nose2 @@ -570,7 +569,7 @@ (define-public python-pygsp ""))))))) (propagated-inputs (list python-numpy python-scikit-image python-scipy)) (native-inputs - (list python-coverage python-coveralls python-pytest)) + (list python-coveralls python-pytest)) (home-page "https://github.com/epfl-lts2/pygsp") (synopsis "Graph Signal Processing in Python") (description "The PyGSP is a Python package to ease signal processing on diff --git a/gnu/packages/jupyter.scm b/gnu/packages/jupyter.scm index f47d8de295..70d894939c 100644 --- a/gnu/packages/jupyter.scm +++ b/gnu/packages/jupyter.scm @@ -519,7 +519,7 @@ (define-public python-jupyter-packaging (list python-deprecation python-packaging python-setuptools python-tomlkit python-wheel)) (native-inputs - (list python-pypa-build python-coverage python-pytest + (list python-pypa-build python-pytest python-pytest-cov python-pytest-mock)) (home-page "https://jupyter.org") (synopsis "Jupyter packaging utilities") diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 65cb08e2f3..2caa64cc08 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -1589,7 +1589,6 @@ (define args (list cmake-minimal googletest pybind11 - python-coverage python-fb-re2 python-parameterized python-pytest @@ -1667,8 +1666,7 @@ (define-public onnx-optimizer " and not test_fuse_transpose"))))))))) (native-inputs (append - (list cmake-minimal python-pytest python-pytest-runner - python-coverage) + (list cmake-minimal python-pytest python-pytest-runner) (filter (lambda (pkg) (member (or (%current-target-system) @@ -5279,8 +5277,7 @@ (define-public python-lightning-utilities "016zikn39apig3y6xyipw34w0w02c73z483radddbf68ivpjgz3r")))) (build-system pyproject-build-system) (native-inputs - (list python-coverage - python-setuptools + (list python-setuptools python-wheel)) (propagated-inputs (list python-importlib-metadata @@ -5471,7 +5468,6 @@ (define-public python-pytorch-lightning (native-inputs (list python-aiohttp python-cloudpickle - python-coverage python-flaky python-pympler python-pytest @@ -5509,7 +5505,6 @@ (define-public python-torchmetrics python-lightning-utilities)) (native-inputs (list python-cloudpickle - python-coverage python-fire python-mir-eval python-mypy @@ -5925,8 +5920,7 @@ (define-public python-gpytorch python-mpmath python-scikit-learn python-scipy)) - (native-inputs (list python-coverage - python-flake8-print + (native-inputs (list python-flake8-print python-nbval python-pytest python-setuptools diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index 7d28ef4b58..ae2afb8441 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -4229,8 +4229,7 @@ (define-public python-pylast ;; https://github.com/pylast/pylast/issues/105 (arguments '(#:tests? #f)) (native-inputs - (list python-coverage python-pytest python-flaky python-pyyaml - python-setuptools-scm)) + (list python-pytest python-flaky python-pyyaml python-setuptools-scm)) (home-page "https://github.com/pylast/pylast") (synopsis "Python interface to Last.fm and Libre.fm") (description "A Python interface to Last.fm and other API-compatible diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm index 7b3756d0aa..7605e4073d 100644 --- a/gnu/packages/package-management.scm +++ b/gnu/packages/package-management.scm @@ -1107,8 +1107,7 @@ (define-public python-anaconda-client python-requests python-setuptools)) (native-inputs - (list python-coverage - python-dateutil + (list python-dateutil python-freezegun python-mock python-pillow @@ -1296,8 +1295,7 @@ (define-public conda ;; XXX: This is dragged in by libarchive and is needed at runtime. zstd)) (native-inputs - (list python-coverage - python-flaky + (list python-flaky python-pytest-cov python-pytest-timeout python-pytest-xprocess diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index c969499521..ebfdd7312e 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -1625,7 +1625,7 @@ (define-public python-re-assert (lambda _ (invoke "pytest" "-vv")))))) (native-inputs - (list python-covdefaults python-coverage python-pytest)) + (list python-covdefaults python-pytest)) (propagated-inputs (list python-regex)) (home-page "https://github.com/asottile/re-assert") diff --git a/gnu/packages/python-compression.scm b/gnu/packages/python-compression.scm index 5b994d408f..dfe819733e 100644 --- a/gnu/packages/python-compression.scm +++ b/gnu/packages/python-compression.scm @@ -163,7 +163,6 @@ (define-public python-multivolumefile (build-system pyproject-build-system) (native-inputs (list python-setuptools-scm - python-coverage python-coveralls python-hypothesis python-pyannotate @@ -306,8 +305,7 @@ (define-public python-pybcj (build-system pyproject-build-system) (propagated-inputs (list python-importlib-metadata)) (native-inputs - (list python-coverage - python-hypothesis + (list python-hypothesis python-pytest python-pytest-cov python-setuptools-scm @@ -340,8 +338,7 @@ (define-public python-bcj-cffi (propagated-inputs (list python-cffi python-toml python-setuptools-scm)) (native-inputs - (list python-setuptools python-coverage python-pytest - python-pytest-cov)) + (list python-setuptools python-pytest python-pytest-cov)) (home-page "https://github.com/miurahr/bcj-cffi") (synopsis "Branch / Call /Jump CFFI library in Python") (description "This package provides an implementation of the Branch / Call / @@ -466,8 +463,7 @@ (define-public python-pyppmd "03w4x26mar0ha73c3v39psn1i0k6xrzwmaxfsxysic73jz99np07")))) (build-system pyproject-build-system) (native-inputs - (list python-coverage - python-hypothesis + (list python-hypothesis python-pytest python-pytest-benchmark python-pytest-cov @@ -500,7 +496,6 @@ (define-public python-ppmd-cffi (native-inputs (list python-hypothesis python-setuptools-scm - python-coverage python-pytest python-pytest-cov)) (home-page "https://github.com/miurahr/ppmd") @@ -535,8 +530,7 @@ (define-public python-py7zr python-pyzstd python-texttable)) (native-inputs - (list python-coverage - python-setuptools + (list python-setuptools python-coveralls python-libarchive-c python-py-cpuinfo diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index c654f3f13d..6281ca5c8c 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -1604,8 +1604,7 @@ (define-public python-ovh (build-system pyproject-build-system) (arguments (list #:tests? #f)) ; XXX: tests require networking (propagated-inputs (list python-requests)) - (native-inputs (list python-coverage - python-isort + (native-inputs (list python-isort python-pytest python-pytest-cov python-setuptools @@ -3855,8 +3854,7 @@ (define-public python-zope-interface (build-system python-build-system) (arguments '(#:tests? #f)) ; test suite can't find python-zope-testing (native-inputs - (list python-coverage python-nose python-zope-event - python-zope-testing)) + (list python-nose python-zope-event python-zope-testing)) (home-page "https://github.com/zopefoundation/zope.interface") (synopsis "Python implementation of the \"design by contract\" methodology") @@ -4152,7 +4150,7 @@ (define-public python-zope-hookable "0hc82lfr7bk53nvbxvjkibkarngyrzgfk2i6bg8wshl0ly0pdl19")))) (build-system python-build-system) (native-inputs - (list python-coverage python-zope-testing)) + (list python-zope-testing)) (home-page "https://github.com/zopefoundation/zope.hookable") (synopsis "Zope hookable") (description "This package supports the efficient creation of hookable @@ -5611,7 +5609,7 @@ (define-public python-url (propagated-inputs (list python-publicsuffix)) (native-inputs - (list python-coverage python-nose)) + (list python-nose)) (arguments `(#:tests? #f)) ; FIXME: tests fail with "ImportError: No module named 'tests'" (home-page "https://github.com/seomoz/url-py") @@ -8434,7 +8432,7 @@ (define-public python-transaction (propagated-inputs (list python-zope-interface)) (native-inputs - (list python-coverage python-mock python-nose)) + (list python-mock python-nose)) (home-page "https://github.com/zopefoundation/transaction") (synopsis "Transaction management for Python") (description "This package contains a generic transaction implementation @@ -8911,7 +8909,6 @@ (define-public python-sanic (list python-bandit python-beautifulsoup4 python-chardet - python-coverage python-cryptography python-docutils python-mypy @@ -9655,7 +9652,7 @@ (define-public python-woob python-six python-unidecode)) (native-inputs - (list python-coverage python-nose python-selenium python-xunitparser)) + (list python-nose python-selenium python-xunitparser)) (home-page "https://woob.tech/") (synopsis "Woob, Web Outside Of Browsers") (description "Woob is a collection of applications able to interact with @@ -9704,8 +9701,7 @@ (define-public python-flask-combo-jsonapi python-simplejson python-six)) (native-inputs - (list python-coverage - python-coveralls + (list python-coveralls python-pytest python-pytest-runner)) (home-page "https://github.com/AdCombo/flask-combo-jsonapi") diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 52f7ebde3f..d49b153b5f 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -1387,7 +1387,7 @@ (define-public python-affine (base32 "1shyvajayyzbkp9dihb4mz835jnkp0kqqbyjfqci6v43da6q2kd2")))) (build-system pyproject-build-system) - (propagated-inputs (list python-coveralls python-flake8 python-pydocstyle + (propagated-inputs (list python-coveralls python-pydocstyle python-pytest python-pytest-cov)) (native-inputs (list python-flit-core)) (home-page "https://github.com/rasterio/affine") @@ -1554,7 +1554,7 @@ (define-public python-colorful (base32 "0kyy9qhvrb5m9h8xmri7c88i0k1g5qc7017anw39gx44an7mn33y")))) (build-system pyproject-build-system) (native-inputs - (list python-coverage python-pytest python-setuptools python-wheel)) + (list python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-colorama)) (home-page "http://github.com/timofurrer/colorful") @@ -1679,8 +1679,7 @@ (define-public python-lunr '(list "-k" "not TestLanguageSupport" "--ignore-glob=tests/acceptance_tests/*"))) (native-inputs - (list python-coverage - python-hatch-fancy-pypi-readme + (list python-hatch-fancy-pypi-readme python-hatchling python-pytest python-pytest-timeout @@ -1713,8 +1712,7 @@ (define-public python-mdit-py-plugins (list python-markdown-it-py python-attrs)) (native-inputs - (list python-coverage - python-flit-core + (list python-flit-core python-pytest python-pytest-cov python-pytest-regressions)) @@ -3337,8 +3335,7 @@ (define-public python-bidict "02dy0b1k7qlhn7ajyzkrvxhyhjj0hzcq6ws3zjml9hkdz5znz92g")))) (build-system python-build-system) (native-inputs - (list python-coverage - python-hypothesis + (list python-hypothesis python-py python-pytest python-pytest-benchmark @@ -3706,8 +3703,6 @@ (define-public python-sh ;; XXX: A Python 2 test fails when HOME=/homeless-shelter. (setenv "HOME" "/tmp") (invoke "python" "sh.py" "test")))))) - (native-inputs - (list python-coverage)) (home-page "https://github.com/amoffat/sh") (synopsis "Python subprocess replacement") (description "This package provides a replacement for Python's @@ -4300,7 +4295,6 @@ (define-public python-can (native-inputs (list ;; python-canalystii ; Not packed yet python-codecov - python-coverage python-future python-hypothesis python-mock @@ -5214,7 +5208,6 @@ (define-public python-jsonargparse python-typeshed-client)) (native-inputs (list python-attrs - python-coverage python-pycodestyle python-pydantic python-pytest @@ -6752,8 +6745,7 @@ (define-public python-pyjwt "1z85kwr945rbzrn5wabrsmck5x8disa9wc7b3y5gci7w65z5qa39")))) (build-system pyproject-build-system) (native-inputs - (list python-coverage - python-cryptography + (list python-cryptography python-pytest python-sphinx python-sphinx-rtd-theme @@ -7019,7 +7011,6 @@ (define-public python-virtualenv-clone (native-inputs (list python-pytest python-tox python-virtualenv - python-coverage python-wheel python-tomli python-hypothesis)) @@ -11371,7 +11362,6 @@ (define-public python-pikepdf (native-inputs (list pybind11 python-attrs - python-coverage python-hypothesis python-setuptools-scm python-psutil @@ -17415,7 +17405,7 @@ (define-public python-tasklogger (base32 "1901mibcp6aiyjy8afnybrxnb0dkbdxlbvjqbr3gginlw7dr18xh")))) (build-system pyproject-build-system) (propagated-inputs (list python-deprecated)) - (native-inputs (list python-coverage python-coveralls python-nose2 + (native-inputs (list python-coveralls python-nose2 python-numpy python-setuptools python-wheel)) (home-page "https://github.com/scottgigante/tasklogger") (synopsis "Extension to the core Python logging library") @@ -19021,8 +19011,7 @@ (define-public python-notebook python-tornado-6 python-traitlets)) (native-inputs - (list python-coverage - python-jupyter-server + (list python-jupyter-server python-nbval python-pytest python-pytest-cov @@ -19784,7 +19773,6 @@ (define-public python-structlog python-hatch-vcs python-hatchling ;; For the tests - python-coverage python-freezegun python-pretend python-pytest @@ -24451,7 +24439,7 @@ (define-public binwalk (lambda _ (setenv "HOME" "")))))) (native-inputs - (list python-coverage python-nose)) + (list python-nose)) (home-page "https://github.com/ReFirmLabs/binwalk") (synopsis "Firmware analysis tool") (description "Binwalk is a tool for analyzing, reverse engineering, and @@ -28212,7 +28200,7 @@ (define-public python-yq (inputs (list python-argcomplete python-pyyaml python-xmltodict python-toml jq)) (native-inputs - (list python-coverage python-setuptools-scm python-wheel)) + (list python-setuptools-scm python-wheel)) (home-page "https://github.com/kislyuk/yq") (synopsis "Command-line YAML/XML processor") (description @@ -29282,7 +29270,7 @@ (define-public python-stone (propagated-inputs (list python-ply python-six)) (native-inputs - (list python-coverage python-mock python-pytest python-pytest-runner)) + (list python-mock python-pytest python-pytest-runner)) (home-page "https://github.com/dropbox/stone") (synopsis "Official Api Spec Language for Dropbox") (description @@ -29557,8 +29545,7 @@ (define-public python-identify ;; system-error "utime" "~A" ("No such file or directory") (delete 'ensure-no-mtimes-pre-1980)))) (native-inputs - (list python-coverage python-pytest python-setuptools - python-ukkonen python-wheel)) + (list python-pytest python-setuptools python-ukkonen python-wheel)) (propagated-inputs (list python-editdistance)) (home-page "https://github.com/chriskuehl/identify") @@ -29657,8 +29644,7 @@ (define-public python-nodeenv "not test_smoke" " and not test_smoke_n_system_special_chars")))) (native-inputs - (list python-coverage - python-mock + (list python-mock python-pytest python-setuptools python-wheel)) @@ -32481,7 +32467,7 @@ (define-public python-forbiddenfruit (lambda _ (invoke "make" "SKIP_DEPS=1")))))) (native-inputs - (list python-nose python-coverage)) + (list python-nose)) (home-page "https://github.com/clarete/forbiddenfruit") (synopsis "Patch python built-in objects") (description "This project allows Python code to extend built-in types.") @@ -33552,8 +33538,7 @@ (define-public python-eliot (propagated-inputs (list python-boltons python-orjson python-pyrsistent python-zope-interface)) (native-inputs - (list python-coverage - python-hypothesis + (list python-hypothesis python-pytest python-pytest-xdist python-setuptools @@ -33586,7 +33571,6 @@ (define-public python-pem (build-system python-build-system) (native-inputs (list python-certifi - python-coverage python-pretend python-pyopenssl python-pytest @@ -35666,7 +35650,6 @@ (define-public python-scikit-build gfortran git-minimal/pinned ;for tests ninja - python-coverage python-cython python-hatchling python-hatch-fancy-pypi-readme @@ -36861,8 +36844,7 @@ (define-public python-minikanren python-pytest python-pytest-cov python-sympy - python-versioneer - python-coverage)) + python-versioneer)) (propagated-inputs (list python-toolz python-cons python-multipledispatch python-etuples python-logical-unification)) @@ -38319,8 +38301,7 @@ (define-public python-verspec (base32 "07n06wv85fm4vl1ird2mja0823js3x322wgs9gdnq1djjyk4ql64")))) (build-system python-build-system) - (native-inputs (list python-coverage python-mypy - python-pretend python-pytest)) + (native-inputs (list python-mypy python-pretend python-pytest)) (arguments `(#:phases (modify-phases %standard-phases (replace 'check @@ -38756,7 +38737,7 @@ (define-public python-mike "0yxp816x7s948xsd0fifvq9shg01xdxlifd9rzf5y2rd9iwz3hsn")))) (build-system python-build-system) (native-inputs - (list python-coverage python-shtab)) + (list python-shtab)) (propagated-inputs (list python-jinja2 python-mkdocs python-pyyaml python-verspec)) (home-page "https://github.com/jimporter/mike") diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index 1eed4fd180..375531b1ee 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -1250,7 +1250,6 @@ (define-public python-dolfin-adjoint (list fenics openmpi pybind11)) (native-inputs (list pkg-config - python-coverage python-decorator python-pkgconfig python-pytest)) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 58975e652f..736b90b384 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2619,8 +2619,7 @@ (define-public python-emcee (base32 "0zb3ihja3hyj6zjbhkpxhyyppnv58q2jjg0yd1lwmydqdaplvbqi")))) (build-system pyproject-build-system) (propagated-inputs (list python-numpy)) - (native-inputs (list python-coverage - python-pytest + (native-inputs (list python-pytest python-pytest-cov python-setuptools python-setuptools-scm @@ -7135,8 +7134,7 @@ (define-public python-rpy2 r-dbplyr zlib)) (native-inputs - (list python-coverage - python-ipython + (list python-ipython python-numpy python-pandas python-pytest diff --git a/gnu/packages/syndication.scm b/gnu/packages/syndication.scm index fc563a657f..ff9e18f064 100644 --- a/gnu/packages/syndication.scm +++ b/gnu/packages/syndication.scm @@ -499,7 +499,6 @@ (define-public rtv (native-inputs (list ncurses python-coveralls - python-coverage python-mock python-pytest python-vcrpy)) @@ -541,8 +540,7 @@ (define-public tuir (list python-beautifulsoup4 python-decorator python-kitchen python-requests python-six)) (native-inputs - (list python-coverage - python-coveralls + (list python-coveralls python-mock python-pytest python-setuptools diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm index b9dd12803d..da9f0e3483 100644 --- a/gnu/packages/terminals.scm +++ b/gnu/packages/terminals.scm @@ -1176,8 +1176,7 @@ (define-public python-halo (propagated-inputs (list python-colorama python-log-symbols python-six python-spinners python-termcolor)) (native-inputs - (list python-coverage - python-nose + (list python-nose python-setuptools python-tox python-twine @@ -1208,8 +1207,7 @@ (define-public python-log-symbols (("(.*)==(.*)$" _ dep ver) (string-append dep ">=" ver)))))))) (native-inputs - (list python-coverage - python-nose + (list python-nose python-setuptools python-tox python-wheel)) @@ -1241,8 +1239,7 @@ (define-public python-spinners (("(.*)==(.*)$" _ dep ver) (string-append dep ">=" ver)))))))) (native-inputs - (list python-coverage - python-nose + (list python-nose python-setuptools python-tox python-wheel)) diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm index 1bdd58269c..792ef1f3b3 100644 --- a/gnu/packages/textutils.scm +++ b/gnu/packages/textutils.scm @@ -1757,7 +1757,6 @@ (define-public python-panflute (build-system python-build-system) (propagated-inputs (list python-click python-pyyaml)) (native-inputs (list python-configparser - python-coverage python-pandocfilters python-pytest python-pytest-cov diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm index d7981fa8cf..14acec2e84 100644 --- a/gnu/packages/version-control.scm +++ b/gnu/packages/version-control.scm @@ -2567,7 +2567,6 @@ (define-public pre-commit (native-inputs (list git-minimal/pinned python-covdefaults - python-coverage python-distlib python-pytest python-pytest-env diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm index 4c0213eb67..ad338728fe 100644 --- a/gnu/packages/web.scm +++ b/gnu/packages/web.scm @@ -7172,7 +7172,6 @@ (define-public python-httpretty (invoke "nosetests" "--exclude=(passthrough|streaming|httpretty_should_handle)"))))))) (native-inputs (list nss-certs-for-test - python-coverage python-eventlet python-freezegun python-httplib2 diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm index 10cd6d98fa..4b9f7566a1 100644 --- a/gnu/packages/xml.scm +++ b/gnu/packages/xml.scm @@ -1996,7 +1996,7 @@ (define-public python-xmltodict "08cadlb9vsb4pmzc99lz3a2lx6qcfazyvgk10pcqijvyxlwcdn2h")))) (build-system pyproject-build-system) (native-inputs - (list python-coverage python-nose python-setuptools python-wheel)) + (list python-nose python-setuptools python-wheel)) (home-page "https://github.com/martinblech/xmltodict") (synopsis "Work with XML like you are working with JSON") (description "This package provides a Python library to convert XML to From patchwork Thu Feb 27 14:27:10 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39368 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 14BCD27BBE2; Thu, 27 Feb 2025 14:37:18 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.3 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,TVD_SPACE_RATIO,URIBL_BLOCKED,URIBL_SBL_A autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 354C427BBEB for ; Thu, 27 Feb 2025 14:37:15 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnewv-0003hA-Jf; Thu, 27 Feb 2025 09:33:18 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnewk-00030D-4p for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:06 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnewj-0006TP-OO for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:05 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=hPGkn/xPfOjFktSkFFLRZVNuux+2ys08qqInqFTvYyA=; b=NMpo29d1luZwKr5bJG3ocvGYFy5cHMPzN2fWc77BxMy/R/F9T759dxR/ATgAoFoEqTU4hxb1rOCI5ZtJHBzOfAHLyW3gMLCCv8x00Noj9L8R/zy1aOhJjiUJiHcxb31AAFAgEOqCeJt5+WuoL2a3WCgLBh9RCHU4z+jGbE/yog+VDfxXW6RhA9BII2rfdlnygbZraw4+WeaWtLoVRchq8qnXdASoRkRx6N1/1BHZgPBOvOHZI51004LMRIdt+I3S4ebU/VjsVBgo8TShSc7G3l0HmdGWWbCOYcso3WCyj52C20As+eEFt8aQR3M3ERhH2kiyvgqG313R792IsFIIGg==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnewj-0000tU-HK for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:05 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 09/48] build-system/pyproject: Remove python-coverage native-input. 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X-getmail-retrieved-from-mailbox: Patches * gnu/packages/jupyter.scm (python-nbclassic, python-papermill) * gnu/packages/openstack.scm (python-hacking, python-oslo.context) * gnu/packages/python-check.scm (python-pytest-testmon) * gnu/packages/python-science.scm (python-scikit-survival, python-modin, python-pynetdicom) * gnu/packages/python-web.scm (python-aioitertools, python-python3-saml, python-zope-i18n-messageid, python-rangehttpserver, python-http-ece, python-zeep) * gnu/packages/python-xyz.scm (python-argopt, python-case, python-pypugjs, python-repoze-lru, python-lsp-jsonrpc, python-pillow-heif, python-legacy-api-wrap, python-waitress, python-gevent, python-twisted, python-mamba, python-bagit, python-typer, python-numcodecs, python-diceware, python-param) * gnu/packages/statistics.scm (python-radian) [native-inputs]: Remove python-coverage. --- gnu/packages/jupyter.scm | 4 +--- gnu/packages/openstack.scm | 6 ++---- gnu/packages/python-check.scm | 3 +-- gnu/packages/python-science.scm | 3 --- gnu/packages/python-web.scm | 13 +++++-------- gnu/packages/python-xyz.scm | 32 +++++++++++--------------------- gnu/packages/statistics.scm | 3 +-- 7 files changed, 21 insertions(+), 43 deletions(-) diff --git a/gnu/packages/jupyter.scm b/gnu/packages/jupyter.scm index 70d894939c..a9f57b2ccc 100644 --- a/gnu/packages/jupyter.scm +++ b/gnu/packages/jupyter.scm @@ -81,8 +81,7 @@ (define-public python-nbclassic python-terminado python-tornado-6 python-traitlets)) - (native-inputs (list python-coverage - python-nbval + (native-inputs (list python-nbval python-jupyter-packaging python-pytest python-pytest-cov @@ -1162,7 +1161,6 @@ (define-public python-papermill python-bumpversion python-check-manifest python-codecov - python-coverage python-ipython python-ipywidgets python-moto diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm index ac283bd019..84696a586f 100644 --- a/gnu/packages/openstack.scm +++ b/gnu/packages/openstack.scm @@ -153,8 +153,7 @@ (define-public python-hacking (propagated-inputs (list python-flake8)) (native-inputs - (list python-coverage - python-ddt + (list python-ddt python-eventlet python-fixtures python-setuptools @@ -551,8 +550,7 @@ (define-public python-oslo.context (propagated-inputs (list python-debtcollector)) (native-inputs - (list python-coverage - python-fixtures + (list python-fixtures python-hacking python-mypy python-oslotest diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index ebfdd7312e..27abc67c58 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -1651,8 +1651,7 @@ (define-public python-pytest-testmon (build-system pyproject-build-system) (arguments (list #:tests? #false)) ;there are none (native-inputs - (list python-coverage - python-pytest + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/tarpas/pytest-testmon") diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 508b819cf9..2e643f1740 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -889,7 +889,6 @@ (define-public python-scikit-survival python-scipy)) (native-inputs (list python-pypa-build - python-coverage python-cython-3 python-packaging python-pytest @@ -3055,7 +3054,6 @@ (define-public python-modin python-s3fs)) (native-inputs (list python-boto3 - python-coverage python-jinja2 python-lxml python-matplotlib @@ -4061,7 +4059,6 @@ (define-public python-pynetdicom " and not test_pr_level_series" " and not test_scp_cancelled")))) (native-inputs (list python-codespell - python-coverage python-poetry-core python-pytest python-pytest-cov diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 6281ca5c8c..70830bb672 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -903,8 +903,7 @@ (define-public python-aioitertools (arguments (list #:tests? #false)) (propagated-inputs (list python-typing-extensions)) (native-inputs - (list python-coverage - python-flake8 + (list python-flake8 python-flit-core python-mypy python-pytest @@ -1577,8 +1576,7 @@ (define-public python-python3-saml (setenv "LD_LIBRARY_PATH" (dirname (search-input-file inputs "lib/libxmlsec1-openssl.so.1.2.37")))))))) (propagated-inputs (list python-isodate python-lxml python-xmlsec)) - (native-inputs (list python-coverage - python-flake8 + (native-inputs (list python-flake8 python-freezegun python-poetry-core python-pytest @@ -3987,7 +3985,7 @@ (define-public python-zope-i18nmessageid (base32 "14mx62khys82p2gmmf3m40x4jmvcz3rndvl6qik2n2qfp13n7ds7")))) (build-system pyproject-build-system) (native-inputs - (list python-coverage python-setuptools + (list python-setuptools python-wheel python-zope-testrunner)) (propagated-inputs (list python-six)) @@ -8217,7 +8215,7 @@ (define-public python-rangehttpserver (sha256 (base32 "1dx533fsbq1mbz3by7qkm5bh2c253nwvm8214pqbwbfq07kqkwf2")))) (build-system pyproject-build-system) - (native-inputs (list python-coverage python-coveralls python-pytest + (native-inputs (list python-coveralls python-pytest python-setuptools python-wheel)) (home-page "https://github.com/danvk/RangeHTTPServer") (synopsis "SimpleHTTPServer with support for range requests") @@ -8577,7 +8575,7 @@ (define-public python-http-ece (propagated-inputs (list python-cryptography)) (native-inputs - (list python-coverage python-mock python-nose)) + (list python-mock python-nose)) (home-page "https://github.com/web-push-libs/encrypted-content-encoding") (synopsis "Encrypted Content Encoding for HTTP") (description @@ -10134,7 +10132,6 @@ (define-public python-zeep python-requests-toolbelt)) (native-inputs (list nss-certs-for-test - python-coverage python-flake8 python-flake8-blind-except python-flake8-debugger diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index d49b153b5f..dfebaf96a3 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -1408,7 +1408,7 @@ (define-public python-argopt "0ybs7kkp0cpl8zn1lvf7481xhssg1bbhh5la2cjzdm5yibashyxa")))) (build-system python-build-system) (native-inputs - (list python-coverage python-nose python-setuptools ; Won't build without this. + (list python-nose python-setuptools ; Won't build without this. python-setuptools-scm)) (propagated-inputs (list python-toml python-flake8)) @@ -4690,8 +4690,6 @@ (define-public python-case (build-system python-build-system) (propagated-inputs (list python-mock python-nose python-six)) - (native-inputs - (list python-coverage)) (home-page "https://github.com/celery/case") (synopsis "Unittest utilities and convenience methods") (description @@ -7214,8 +7212,7 @@ (define-public python-pypugjs ;; pyramid is outdated and pyramid-mako is unpackaged. (substitute* "setup.cfg" (("'(pyramid|pyramid-mako)[^']*',") ""))))))) - (native-inputs (list python-coverage - python-django + (native-inputs (list python-django python-jinja2 python-flake8 python-flask @@ -7825,7 +7822,7 @@ (define-public python-repoze-lru (base32 "0xzz1aw2smy8hdszrq8yhnklx6w1r1mf55061kalw3iq35gafa84")))) (build-system pyproject-build-system) (native-inputs - (list python-coverage python-nose python-setuptools python-wheel)) + (list python-nose python-setuptools python-wheel)) (home-page "https://www.repoze.org") (synopsis "Tiny LRU cache implementation and decorator") (description @@ -8690,8 +8687,7 @@ (define-public python-lsp-jsonrpc "04n95h0cqnsrdyh1gv0abh2i5ynyrq2wfqpppx9djp7mxr9y9226")))) (build-system pyproject-build-system) (native-inputs - (list python-coverage - python-pycodestyle + (list python-pycodestyle python-pyflakes python-pytest python-pytest-cov @@ -11463,7 +11459,6 @@ (define-public python-pillow-heif (inputs (list libheif)) (propagated-inputs (list python-pillow)) (native-inputs (list opencv ; for opencv-python - python-coverage python-defusedxml python-numpy python-packaging @@ -17688,8 +17683,7 @@ (define-public python-legacy-api-wrap "1d5jyd8d2wxm6y0s39wwqw87gdm4zqlbyz78cf3yqbrim1xdch4w")))) (build-system pyproject-build-system) (native-inputs - (list python-coverage - python-hatch-vcs + (list python-hatch-vcs python-hatchling python-pytest)) (home-page "https://github.com/flying-sheep/legacy-api-wrap") @@ -20815,7 +20809,7 @@ (define-public python-waitress ;; https://github.com/Pylons/waitress/issues/443 (list #:test-flags #~(list "-k" "not test_service_port"))) (native-inputs - (list python-coverage python-pytest python-pytest-cov + (list python-pytest python-pytest-cov python-setuptools python-wheel)) (home-page "https://github.com/Pylons/waitress") (synopsis "Waitress WSGI server") @@ -22309,7 +22303,6 @@ (define-public python-gevent (list python-greenlet python-zope-event python-zope-interface)) (native-inputs (list python-cffi - python-coverage python-cython python-dnspython python-idna @@ -22412,7 +22405,6 @@ (define-public python-twisted python-zope-interface)) (native-inputs (list glibc-utf8-locales ;for OpenTestLogTests.test_utf8 - python-coverage python-hatch-fancy-pypi-readme python-hatchling python-httpx @@ -26105,7 +26097,7 @@ (define-public python-mamba (build-system python-build-system) (arguments `(#:tests? #f)) ; No test (propagated-inputs - (list python-clint python-coverage)) + (list python-clint)) (home-page "https://nestorsalceda.com/mamba/") (synopsis "Test runner for Python") (description @@ -26869,7 +26861,7 @@ (define-public python-bagit "1m6y04qmig0b5hzb35lnaw3d2yfydb7alyr1579yblvgs3da6j7j")))) (build-system python-build-system) (native-inputs - (list python-setuptools-scm python-coverage python-mock)) + (list python-setuptools-scm python-mock)) (home-page "https://libraryofcongress.github.io/bagit-python/") (synopsis "Create and validate BagIt packages") (description "Bagit is a Python library and command line utility for working @@ -28529,7 +28521,7 @@ (define-public python-typer (propagated-inputs (list python-click)) (native-inputs - (list python-coverage python-flit python-pytest python-rich + (list python-flit python-pytest python-rich python-shellingham)) (home-page "https://github.com/tiangolo/typer") (synopsis "Typer builds CLI based on Python type hints") @@ -29916,8 +29908,7 @@ (define-public python-numcodecs (list c-blosc lz4 zlib `(,zstd "lib"))) (propagated-inputs - (list python-coverage - python-google-crc32c + (list python-google-crc32c python-importlib-metadata python-msgpack python-numpy @@ -33715,7 +33706,7 @@ (define-public python-diceware "0klb0ysybzlh2wihvir82hgq62v0jjmlcqklwajyms7c0p529yby")))) (build-system python-build-system) (native-inputs - (list python-coverage python-pytest python-pytest-runner)) + (list python-pytest python-pytest-runner)) (home-page "https://github.com/ulif/diceware/") (synopsis "Generates memorable passphrases") (description "This package generates passphrases by concatenating words @@ -34810,7 +34801,6 @@ (define-public python-param (build-system pyproject-build-system) (native-inputs (list python-cloudpickle - python-coverage python-hatchling python-hatch-vcs python-ipython diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 736b90b384..7a02786ab6 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -7208,8 +7208,7 @@ (define-public python-radian (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-prompt-toolkit python-pygments python-rchitect)) - (native-inputs (list python-coverage - python-pexpect + (native-inputs (list python-pexpect python-ptyprocess python-pyte python-pytest From patchwork Thu Feb 27 14:27:11 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39374 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id C2EC927BBEA; Thu, 27 Feb 2025 14:38:02 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 4C2D827BBE2 for ; Thu, 27 Feb 2025 14:38:02 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnexF-0004WO-NS; Thu, 27 Feb 2025 09:33:37 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnewl-0003Eo-PZ for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:07 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnewl-0006Tk-7p for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:07 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=+UTmJpf9YALq1UGdknNZYl4q6xIk94s6QV15ea/m6dA=; b=rxcJEHz6ZbmJmbwPpKse0O2ETwOBAR/Nyp79oo2udeI3DJIa21XrjMJk1Z2kUZ+XDRgMXCyZdao0/KPwKmc6wijrwEJ8S1kYR+kSW4hOBfsoclTLMvchTWRwf8CNUp087aecjbVVkoQUK1/xKejb7UxD9Q3L96cybQj4hTj5HtnivHD4mZqQnoCL5pflkTbbZ/HE9VKStIcLOIvTxTsg7XGTEIUcB7G0o4fWwwFPIjIhCU/34k2P/VeXPDN3ahzsDmhnPDSPNw5k5AlU9fLHGQYUGa56Aq5NzY4isGymGo5XeOXSu9SbS+oCfdX2yTy5QFC20wWskPu+2svG4bMs2Q==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnewl-0000tl-16 for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:07 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 10/48] build-system/pyproject: Remove python-pytest-black native-input. 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TODO: Add python-pytest-ruff to native-inputs once it has been packaged. (native-inputs (list python-pytest - python-pytest-black python-pytest-checkdocs python-pytest-cov python-pytest-enabler diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index dfebaf96a3..c7468c1beb 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -12820,7 +12820,6 @@ (define-public python-importlib-resources (string-append (getcwd) "/_custom_build"))))))) (native-inputs (list python-pytest - python-pytest-black python-pytest-checkdocs python-pytest-cov python-pytest-enabler @@ -12971,7 +12970,6 @@ (define-public python-jaraco-classes #:test-flags '(list "-k" "not project"))) (native-inputs (list python-pytest - python-pytest-black python-pytest-checkdocs python-pytest-cov python-pytest-flake8 @@ -13005,7 +13003,6 @@ (define-public python-jaraco-collections ;; TODO: Add python-pytest-ruff to native-inputs once it has been ;; packaged. (native-inputs (list python-pytest - python-pytest-black python-pytest-checkdocs python-pytest-cov python-pytest-enabler @@ -13066,7 +13063,6 @@ (define-public python-jaraco-context #:test-flags '(list "-k" "not project"))) (native-inputs (list python-pytest - python-pytest-black python-pytest-checkdocs python-pytest-cov python-pytest-flake8 @@ -13101,7 +13097,6 @@ (define-public python-jaraco-functools (native-inputs (list python-jaraco-classes python-pytest - python-pytest-black python-pytest-checkdocs python-pytest-cov python-pytest-flake8 @@ -13196,7 +13191,6 @@ (define-public python-jaraco-text ;; TODO: Add python-pytest-ruff to native-inputs once it has been ;; packaged. (native-inputs (list python-pytest - python-pytest-black python-pytest-checkdocs python-pytest-cov python-pytest-enabler @@ -17945,7 +17939,6 @@ (define-public python-path python-packaging python-pygments python-pytest - python-pytest-black python-pytest-checkdocs python-pytest-cov python-pytest-enabler @@ -18051,7 +18044,6 @@ (define-public python-pip-run (append python-nbformat python-pygments python-pytest - python-pytest-black python-pytest-checkdocs python-pytest-cov python-pytest-enabler @@ -27923,7 +27915,6 @@ (define-public python-tempora (native-inputs (list python-freezegun python-pytest - python-pytest-black python-pytest-checkdocs python-pytest-cov python-pytest-enabler From patchwork Thu Feb 27 14:27:12 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39395 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 6131A27BBEA; Thu, 27 Feb 2025 14:40:52 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id CF96927BBE2 for ; Thu, 27 Feb 2025 14:40:51 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnexB-0004DI-Oi; Thu, 27 Feb 2025 09:33:34 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnewj-0002yE-Oy for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:05 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnewj-0006TF-7M for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:05 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=u9JfQ5j7Pnq2PRz8GA70FDnq9EKs7w/zaSRVtJm+C0o=; b=rMEWrom4PESFvYuiAJqkzEgRPi5pdj7VvzNgBlIiXDRIG7DVo2FIloOj1VLCX3Wz6J9/6MwCIEyMUtBwCtF8QJsGXKZMk3k6Du4DOnj5plpKSyyV6T9X0OAiyMMrtIUJCpI/yg6So+Qj8BDz34nHMmctM1uARuC63zVWuCLJI2IyFm0rkG+eftD+BiOZTz/P4A2vb/ebiHjRX6iDtQ53cV4xRAd2pdxQy0but+IvlHE34Fa9t3T3AKzJO14Ay6hKt9hy8WoEe3APK2KRdx7Gw7KzPSBJ2JXpaL9SUIPatcbfsv1oqM2am2lDdMetolLKVvXfUUV4MehUc2EDuqkAhg==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnewj-0000tM-0x for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:05 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 11/48] gnu: python-cram: Remove python-coverage native-input. 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[build-system]: Move to pyproject-build-system. [arguments]<#:phases>: Adapt check and patch-source phases to coverage removal. Change-Id: I83fafcdcfbc977f9d3e3411d01d23d9a0e120ec6 --- gnu/packages/python-xyz.scm | 16 ++++------------ 1 file changed, 4 insertions(+), 12 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index c7468c1beb..fc49715718 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -16443,25 +16443,17 @@ (define-public python-cram ;; causes the line showing the default shell to break into two ;; lines, but the test expects a single line... (("env\\['COLUMNS'\\] = '80'") - "env['COLUMNS'] = '160'")) - - (substitute* "Makefile" - ;; Recent versions of python-coverage have caused the test - ;; coverage to decrease (as of version 0.7). Allow that. - (("--fail-under=100") - "--fail-under=90")) - - #t)) + "env['COLUMNS'] = '160'")))) (replace 'check ;; The test phase uses the built library and executable. (lambda* (#:key inputs outputs #:allow-other-keys) (add-installed-pythonpath inputs outputs) (setenv "PATH" (string-append (getenv "PATH") ":" (assoc-ref outputs "out") "/bin")) - (invoke "make" "test")))))) - (build-system python-build-system) + (invoke "make" "quicktest")))))) + (build-system pyproject-build-system) (native-inputs - (list python-coverage python-setuptools python-wheel which)) + (list python-setuptools python-wheel which)) (synopsis "Simple testing framework for command line applications") (description "Cram is a functional testing framework for command line applications. 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[arguments]<#:phases>: Adapt patch phase. Change-Id: I94394544079197b4a3f8c53cc0b3d78d1f5dc8be --- gnu/packages/bootloaders.scm | 17 ++++------------- 1 file changed, 4 insertions(+), 13 deletions(-) diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm index 01497678cd..6c4e4f70f5 100644 --- a/gnu/packages/bootloaders.scm +++ b/gnu/packages/bootloaders.scm @@ -834,8 +834,7 @@ (define-public u-boot-tools (name "u-boot-tools") (native-inputs (modify-inputs (package-native-inputs u-boot) - (prepend python-coverage - python-filelock + (prepend python-filelock python-pycryptodomex python-pytest python-pytest-xdist))) @@ -851,14 +850,6 @@ (define-public u-boot-tools (("/bin/false") (which "false"))) (substitute* "tools/dtoc/fdt_util.py" (("'cc'") "'gcc'")) - (substitute* "tools/u_boot_pylib/test_util.py" - ;; python3-coverage is simply called coverage in guix. - (("python3-coverage") "coverage") - - ;; Don't require 100% coverage since it's brittle and can - ;; fail with newer versions of coverage or dependencies. - (("raise ValueError\\('Test coverage failure'\\)") - "print('Continuing anyway since Guix does not care :O')")) (substitute* "test/run" ;; Make it easier to find test failures. (("#!/bin/bash") "#!/bin/bash -x") @@ -871,9 +862,9 @@ (define-public u-boot-tools "# run_test \"sandbox_noinst\"") (("run_test \"sandbox_vpl\"") "# run_test \"sandbox_vpl\"") - ;; FIXME: code coverage not working - (("run_test \"binman code coverage\"") - "# run_test \"binman code coverage\"") + ;; Disable code coverage tests. + (("run_test \"(\\w+) code coverage\"" all) + (string-append "# " all)) ;; This test would require internet access. (("\\./tools/buildman/buildman") (which "true"))) (substitute* "test/py/tests/test_sandbox_exit.py" From patchwork Thu Feb 27 14:27:14 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39358 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 46A9427BBE9; Thu, 27 Feb 2025 14:35:28 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id C372B27BBE2 for ; Thu, 27 Feb 2025 14:35:26 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnexJ-0004ks-Tk; Thu, 27 Feb 2025 09:33:42 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnewp-0003a7-BH for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:13 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnewo-0006UO-NW for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:10 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=R3JIuChInso20TNGqnY031VuDM4BkVvimlLX5G/s5OU=; b=mK+v7pSGCVdN1OyLWYfoU5KzzorAqPbNOgAB3VOSpeAt6i7EdkfYbrOCM//NQ9TnOxIuhi+onuNJFZr24o2Vx3pFlg94WKzsJvQnd+ZigrLjMHriAD6BuefH0i7wiGJPugzA/6hfg6Z9wI5aU4nH5TvaEBZlmsqhMsM5yHXSaw1f8aKEkmJ+eLOtV2boentsCiToNhIs5qIC4ZL7gyvpALZ8drfJev2Yyjh2xCYC9x889S6W9zgs9LnQpIxuEmJsCXSKePFYcyaoOZciBZxG4IYjVE88qHbKffZng9vpVQpRoGqlwrUY/fo81lRn+W7Yx1XMqzCeGH9SkYkXrlkRPw==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnewo-0000uQ-GK for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:10 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 13/48] gnu: python-aiosqlite: Remove python-coverage native-input. 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[native-inputs]: Remove python-coverage. Change-Id: I165d174426022f0603223e3def91ffe280f15899 --- gnu/packages/databases.scm | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index fd77fa940c..3b8d1d9d23 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -4141,11 +4141,8 @@ (define-public python-aiosqlite (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? - (invoke "python" "-m" "coverage" "run" "-m" - "aiosqlite.tests") - (invoke "python" "-m" "coverage" "report"))))))) + (invoke "python" "-m" "aiosqlite.tests"))))))) (native-inputs (list python-flit-core - python-coverage python-mypy)) (home-page "https://github.com/jreese/aiosqlite") (synopsis From patchwork Thu Feb 27 14:27:15 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39365 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 8E4B627BBEC; Thu, 27 Feb 2025 14:37:14 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 1260127BBE2 for ; Thu, 27 Feb 2025 14:37:14 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tneyI-00062O-6d; Thu, 27 Feb 2025 09:34:44 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnewr-0003gB-F2 for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:16 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnewr-0006V5-50 for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:13 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=KChWKuW1P4i2/Zdb2LWkTMMoRuBsM2lpvJeYcwXZt8w=; b=b2U33pu+5ButLysfAJ9FzB+XM+ODFOehWQxj0+TXUt8gUF9G86mW0dWhKNuchcQr3jf41ibt2hQ7x56T8SelTJha3J/GGwVyqDUalKQyP/3oItvwP7lSasdwf7KIYcQD+NdJ6Z2Dwpcv+NiCYdl/8e1+xv+L3Uv13Q2Pejn81jeLRHfNb1GkMDrY/uNiUBBiGptJwFHbTW3NznRHJnIsYcP9B7Jxs9HvoAWB/+o3EOH9nMC6ku1OYX/2piLMd60+/oa5rYdo3Eg/P8MP7wvOksP4qR1+4W8tVirbo+DV8AXzNpYmdgNMlbWcFIjN9Q4o3subjnbxWY/i1qH3GHHfSw==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnewq-0000ur-QX for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:12 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 14/48] gnu: python-openid: Remove python-coverage native-input. 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[arguments]<#:phases>: Rewrite check phase. Change-Id: Id4ea5abc531f5fd84b60ff22407eb608f1e6ac29 --- gnu/packages/python-web.scm | 17 +++++++++-------- 1 file changed, 9 insertions(+), 8 deletions(-) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 8dd8a58217..4b38c23200 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -3179,17 +3179,18 @@ (define-public python-openid "1bxf9a3ny1js422j962zfzl4a9dhj192pvai05whn7j0iy9gdyrk")))) (build-system python-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "coverage" "run" "-m" - "unittest" "openid.test.test_suite"))))))) + (list + #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (if tests? + (invoke "python" "-m" "unittest" "openid.test.test_suite") + (format #t "test suite not run~%"))))))) (propagated-inputs (list python-defusedxml)) (native-inputs - (list python-coverage python-psycopg2 python-django)) + (list python-psycopg2 python-django)) (home-page "https://github.com/necaris/python3-openid") (synopsis "OpenID support for servers and consumers") (description "This library provides OpenID authentication for Python, both From patchwork Thu Feb 27 14:27:16 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39381 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 0061427BBEA; Thu, 27 Feb 2025 14:38:41 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 39CF727BBE2 for ; Thu, 27 Feb 2025 14:38:41 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnezM-0007CR-Td; Thu, 27 Feb 2025 09:35:54 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnewx-0003mv-FG for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:22 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tneww-0006WH-Hi for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:18 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=Y4WpfrBSiFiJicaRGmqdrOlVpgKeypjo0F3vWzyEPb4=; b=sVwNupL8xbIkPqREIWlRD0sb7P7RlHYIUO2bgmQOSuZ81fev6s45OML5TCsWpEgLlSdbGRnML20NxlsHg+JuU1SFX5elZGcWCnjasC44YOM5bj4WAADcZw0kvJNV7y/vefewqdMHfG9I2B06KWWbFCDNqwMtgxNCT9wFXbfnGv/Iejc3Pt5uPyD/TUioeMI4Qlok88lSjnuz0uFQ7zP3RxLY4JZKTIDUSTKzYXA99LDu8llRENo0dU1qbY3cDu2x4vFdqttVnZy4bKPCVbisoQh6XGiqBQRU9PAJiA9n8w0sAjUGMIo6ju+68gi/hWcpi7dSRHRKTA4PfKPqTNjufw==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tneww-0000w0-9R for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:18 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 15/48] build-system/pyproject: Remove python-coveralls native-input. 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module 'trimesh' has no attribute '__main__'. (delete 'sanity-check)))) (native-inputs - (list python-coveralls - python-pyinstrument + (list python-pyinstrument python-pytest)) (propagated-inputs (list ;; python-cascadio ; not packed yet, optional diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 4b38c23200..d7aa6f3b02 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -8215,8 +8215,7 @@ (define-public python-rangehttpserver (sha256 (base32 "1dx533fsbq1mbz3by7qkm5bh2c253nwvm8214pqbwbfq07kqkwf2")))) (build-system pyproject-build-system) - (native-inputs (list python-coveralls python-pytest - python-setuptools python-wheel)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/danvk/RangeHTTPServer") (synopsis "SimpleHTTPServer with support for range requests") (description @@ -9699,8 +9698,7 @@ (define-public python-flask-combo-jsonapi python-simplejson python-six)) (native-inputs - (list python-coveralls - python-pytest + (list python-pytest python-pytest-runner)) (home-page "https://github.com/AdCombo/flask-combo-jsonapi") (synopsis "Flask extension to quickly create JSON:API 1.0 REST Web APIs") diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index fc49715718..c12b4d74f6 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -1387,7 +1387,7 @@ (define-public python-affine (base32 "1shyvajayyzbkp9dihb4mz835jnkp0kqqbyjfqci6v43da6q2kd2")))) (build-system pyproject-build-system) - (propagated-inputs (list python-coveralls python-pydocstyle + (propagated-inputs (list python-pydocstyle python-pytest python-pytest-cov)) (native-inputs (list python-flit-core)) (home-page "https://github.com/rasterio/affine") @@ -6433,7 +6433,6 @@ (define-public python-ddlparse (build-system pyproject-build-system) (native-inputs (list python-codecov - python-coveralls python-pytest python-pytest-cov python-setuptools @@ -17386,7 +17385,7 @@ (define-public python-tasklogger (base32 "1901mibcp6aiyjy8afnybrxnb0dkbdxlbvjqbr3gginlw7dr18xh")))) (build-system pyproject-build-system) (propagated-inputs (list python-deprecated)) - (native-inputs (list python-coveralls python-nose2 + (native-inputs (list python-nose2 python-numpy python-setuptools python-wheel)) (home-page "https://github.com/scottgigante/tasklogger") (synopsis "Extension to the core Python logging library") @@ -36812,8 +36811,7 @@ (define-public python-minikanren (invoke "python" "-m" "pytest" "-v" "tests/" "kanren/")) #t))))) (native-inputs - (list python-coveralls - python-pydocstyle + (list python-pydocstyle python-pytest python-pytest-cov python-sympy diff --git a/gnu/packages/syndication.scm b/gnu/packages/syndication.scm index ff9e18f064..56677ef91f 100644 --- a/gnu/packages/syndication.scm +++ b/gnu/packages/syndication.scm @@ -498,7 +498,6 @@ (define-public rtv python-requests python-six)) (native-inputs (list ncurses - python-coveralls python-mock python-pytest python-vcrpy)) @@ -540,8 +539,7 @@ (define-public tuir (list python-beautifulsoup4 python-decorator python-kitchen python-requests python-six)) (native-inputs - (list python-coveralls - python-mock + (list python-mock python-pytest python-setuptools python-vcrpy diff --git a/gnu/packages/telegram.scm b/gnu/packages/telegram.scm index cfcd92fcbc..a4cfc6a9ef 100644 --- a/gnu/packages/telegram.scm +++ b/gnu/packages/telegram.scm @@ -839,8 +839,7 @@ (define-public tgcli (add-installed-pythonpath inputs outputs) (invoke "pytest" "tests"))))))) (native-inputs - `(("coveralls" ,python-coveralls) - ("pytest" ,python-pytest) + `(("pytest" ,python-pytest) ("pytest-click" ,python-pytest-click) ("pytest-cov" ,python-pytest-cov) ("mkdocs" ,python-mkdocs) From patchwork Thu Feb 27 14:27:17 2025 Content-Type: text/plain; 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Dropp check of flake8 in tests. #~(list "-k" "not test_file_does_not_exist"))) (native-inputs - (list python-pycodestyle - python-poetry-core + (list python-poetry-core python-pyflakes python-pylint python-pytest @@ -32812,7 +32808,7 @@ (define-public python-fuzzywuzzy "1s00zn75y2dkxgnbw8kl8dw4p1mc77cv78fwfa4yb0274s96w0a5")))) (build-system python-build-system) (native-inputs - (list python-hypothesis python-pycodestyle python-pytest)) + (list python-hypothesis python-pytest)) (propagated-inputs (list python-levenshtein)) (home-page "https://github.com/seatgeek/fuzzywuzzy") From patchwork Thu Feb 27 14:27:18 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39366 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 771FD27BBED; Thu, 27 Feb 2025 14:37:15 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D5D1E27BBE2 for ; 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Change-Id: Ib30c58b69aef7f255e5893ae6f9a33bdf41ac85d --- gnu/packages/python-check.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index 27abc67c58..e57438b2ea 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -1625,7 +1625,7 @@ (define-public python-re-assert (lambda _ (invoke "pytest" "-vv")))))) (native-inputs - (list python-covdefaults python-pytest)) + (list python-pytest)) (propagated-inputs (list python-regex)) (home-page "https://github.com/asottile/re-assert") From patchwork Thu Feb 27 14:27:19 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39372 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5F87B27BBE9; Thu, 27 Feb 2025 14:37:44 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,TVD_SPACE_RATIO,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id CF48927BBEA for ; Thu, 27 Feb 2025 14:37:42 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tneys-0006P9-SB; Thu, 27 Feb 2025 09:35:20 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tneww-0003k0-1x for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:18 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnewv-0006W3-Nv for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:17 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=6mps5CM1Wiae6pZyi9NdS8OZwX0CbzGLCQGSQIZ5O6Y=; b=VG5lfyzpwTZ1L52x4QJ8y7ld00e6COlk1a4rhyWtAwvH9jRmXNmmdgo+0JCaFf005DmGQ7AU6MHIkvIhkO7cGB2tvFwAqUapuX6e9pi91Niy802DQYbVLyUbCvO/3MGUuUOxzWAzrgvMFMIT1wkAa7aS9Hh90XjlTItq7wqdxUES4P8qCv+vaGrQbnwf4RuRXUR9jcwvyTTlTk7etJdhifDhjJafAVh5hu1YvlUxowvvz0e8zS14xiFvuzIfT+hESJ22IVIlUO6WhQp19j1chEzGCzWT0TcE+TDYOJJ79eGQIqX1pbQ1DkZqcmt63crOrcJ04Koecd9YpWGrSQukGg==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnewv-0000vo-Gy for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:17 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 18/48] build-system/pyproject: Remove python-covdefaults native-input. 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This fails because wheel shows up in requirements " and not test_setuptools_get_requires_for_build_wheel")))) (native-inputs - (list python-covdefaults - python-hatch-vcs + (list python-hatch-vcs python-hatchling python-pytest python-pytest-cov @@ -37182,7 +37181,6 @@ (define-public python-platformdirs (build-system pyproject-build-system) (native-inputs (list python-appdirs - python-covdefaults python-hatchling python-hatch-vcs python-pytest diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm index 14acec2e84..8fea330dbb 100644 --- a/gnu/packages/version-control.scm +++ b/gnu/packages/version-control.scm @@ -2566,7 +2566,6 @@ (define-public pre-commit (invoke "git" "config" "--global" "user.email" "you@example.com")))))) (native-inputs (list git-minimal/pinned - python-covdefaults python-distlib python-pytest python-pytest-env From patchwork Thu Feb 27 14:27:20 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39391 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id D037127BBE2; 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python-canalystii ; Not packed yet - python-codecov python-future python-hypothesis python-mock @@ -6431,8 +6430,7 @@ (define-public python-ddlparse (base32 "1nh8m6rxslwk05daxshxmgk41qfp18yynydba49b13l4m8dnh634")))) (build-system pyproject-build-system) (native-inputs - (list python-codecov - python-pytest + (list python-pytest python-pytest-cov python-setuptools python-tox From patchwork Thu Feb 27 14:27:21 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39363 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5D47427BBE9; Thu, 27 Feb 2025 14:36:58 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,TVD_SPACE_RATIO,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 7DEEF27BBE2 for ; 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Resent-From: Nicolas Graves Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 27 Feb 2025 14:33:21 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 70858 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 70858@debbugs.gnu.org Cc: Nicolas Graves Received: via spool by 70858-submit@debbugs.gnu.org id=B70858.17406667493181 (code B ref 70858); Thu, 27 Feb 2025 14:33:21 +0000 Received: (at 70858) by debbugs.gnu.org; 27 Feb 2025 14:32:29 +0000 Received: from localhost ([127.0.0.1]:60985 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tnew7-0000ov-6W for submit@debbugs.gnu.org; Thu, 27 Feb 2025 09:32:29 -0500 Received: from 10.mo575.mail-out.ovh.net ([46.105.79.203]:54645) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tneus-0000cY-Is for 70858@debbugs.gnu.org; Thu, 27 Feb 2025 09:31:18 -0500 Received: from director11.ghost.mail-out.ovh.net (unknown [10.108.17.183]) by mo575.mail-out.ovh.net (Postfix) with ESMTP id 4Z3Yg055mtz1vJk for <70858@debbugs.gnu.org>; Thu, 27 Feb 2025 14:31:08 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-t7gr8 (unknown [10.110.101.176]) by director11.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 5B2701FEFE; Thu, 27 Feb 2025 14:31:08 +0000 (UTC) Received: from ngraves.fr ([37.59.142.102]) by ghost-submission-5b5ff79f4f-t7gr8 with ESMTPSA id dajrDSx3wGdVAD4AaffayA (envelope-from ); Thu, 27 Feb 2025 14:31:08 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-102R004cb17de71-47f6-4def-9e6f-1aac406cb5c4, 852F381DE14AD356CABD73FF6ED6F710EC841544) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 176.140.199.36 Date: Thu, 27 Feb 2025 15:27:21 +0100 Message-ID: <20250227143028.12499-21-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250227143028.12499-1-ngraves@ngraves.fr> References: <20250227143028.12499-1-ngraves@ngraves.fr> MIME-Version: 1.0 X-Ovh-Tracer-Id: 8587238592279601890 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdekjeejtdcutefuodetggdotefrodftvfcurfhrohhfihhlvgemucfqggfjpdevjffgvefmvefgnecuuegrihhlohhuthemucehtddtnecunecujfgurhephffvvefufffkofgjfhgggfestdekredtredttdenucfhrhhomheppfhitgholhgrshcuifhrrghvvghsuceonhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrqeenucggtffrrghtthgvrhhnpeejueffueeuueevgeegvdfhjeekueejieekieeiffeuvedtgfeitdehieffveffkeenucffohhmrghinhepghhithhhuhgsrdgtohhmpdhthhgvrgdrtghouggvshdpohhmnhhiphgrthhhuggsrdhorhhgpdhtgihtvdhtrghgshdrohhrghenucfkphepuddvjedrtddrtddruddpudejiedrudegtddrudelledrfeeipdefjedrheelrddugedvrddutddvnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejtdekheekseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehjeehmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=clC/2TF0SxGcVnJmWfDsfoYlXL2om6ru1DBJzmFosP8=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1740666669; v=1; b=jDnFI8z0OdLAg3c5bjLKtQ6InDQaBuY3A3hZdS30e1ty5BTG3q5/1wACQm3Igc+99GqB1zXY Ukm1DDOukRHbNvGA0VJDr035Hyv3Nn6qX/CoNtzCFMjH9ju3dTch19oRdB8DIed8zYX0zXxA6hT e68F7uGXD5vXNlui6fFCPSGjIHoRvgezIA+HV0AkFLz6uNP0CRkRNWlHL5vWrpW9NgyiyMu+zoz Ls6H/TfqHDCzHnCMIp+9HyOFfayJPScP4h3lL7gHwQlkoqK978xQNYtSf3xilxH5OITPOjy0eMe yIA563xDfZKhHrV+UenPR8Q4/+EHrUTBL39Q/TCq3+0wQ== X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-to: Nicolas Graves X-ACL-Warn: , Nicolas Graves via Guix-patches X-Patchwork-Original-From: Nicolas Graves via Guix-patches via From: Nicolas Graves Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (python-metacells) * gnu/packages/django.scm (python-django-pipeline, python-django-extensions) * gnu/packages/jupyter.scm (python-papermill) * gnu/packages/logging.scm (tailon) * gnu/packages/messaging.scm (python-harmony) * gnu/packages/mp3.scm (python-audioread) * gnu/packages/networking.scm (gandi.cli) * gnu/packages/python-check.scm (python-pytest-qt, python-nox) * gnu/packages/python-science.scm (python-scikit-survival) * gnu/packages/python-web.scm (python-flask-htpasswd, python-simple-websocket, python-omnipath, python-sanic) * gnu/packages/python-xyz.scm (python-lunr, python-bidict, python-jsonargparse, python-ddlparse, python-virtualenv-clone, python-honcho, python-shshsh, python-ansicolors) * gnu/packages/radio.scm (chirp) * gnu/packages/terminals.scm (python-halo, python-log-symbols, python-spinners) * gnu/packages/textutils.scm (txt2tags) [native-inputs]: Remove python-tox. --- gnu/packages/bioinformatics.scm | 1 - gnu/packages/django.scm | 2 -- gnu/packages/jupyter.scm | 1 - gnu/packages/logging.scm | 2 +- gnu/packages/messaging.scm | 2 -- gnu/packages/mp3.scm | 3 +-- gnu/packages/networking.scm | 2 +- gnu/packages/python-check.scm | 4 +--- gnu/packages/python-science.scm | 3 +-- gnu/packages/python-web.scm | 5 +---- gnu/packages/python-xyz.scm | 18 +++++------------- gnu/packages/radio.scm | 3 +-- gnu/packages/terminals.scm | 3 --- gnu/packages/textutils.scm | 1 - 14 files changed, 12 insertions(+), 38 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1cec139812..bb8ac5c800 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3177,7 +3177,6 @@ (define-public python-metacells python-setuptools python-sphinx python-sphinx-rtd-theme - python-tox python-twine python-wheel)) (home-page "https://github.com/tanaylab/metacells.git") diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm index b7f2e23f9d..c1cf3b1337 100644 --- a/gnu/packages/django.scm +++ b/gnu/packages/django.scm @@ -268,7 +268,6 @@ (define-public python-django-extensions (native-inputs (list python-mock python-factory-boy - python-tox python-pytest python-pytest-cov python-pytest-django @@ -995,7 +994,6 @@ (define-public python-django-pipeline (list python-django python-setuptools python-setuptools-scm - python-tox python-wheel)) (home-page "https://github.com/jazzband/django-pipeline") diff --git a/gnu/packages/jupyter.scm b/gnu/packages/jupyter.scm index 1ee99c8602..8f900d3f88 100644 --- a/gnu/packages/jupyter.scm +++ b/gnu/packages/jupyter.scm @@ -1171,7 +1171,6 @@ (define-public python-papermill python-recommonmark python-requests python-setuptools - python-tox python-twine python-wheel)) (home-page "https://github.com/nteract/papermill") diff --git a/gnu/packages/logging.scm b/gnu/packages/logging.scm index 9cc28279d7..55a1db4123 100644 --- a/gnu/packages/logging.scm +++ b/gnu/packages/logging.scm @@ -159,7 +159,7 @@ (define-public tailon "0xkmrivzilsc9wqr8ms67v7399gxnh7pv5687k4rdpdgz4309fwc")))) (build-system python-build-system) (native-inputs - (list python-tox python-wheel)) + (list python-wheel)) (inputs (list python-pyyaml-5 python-sockjs-tornado python-tornado-http-auth python-tornado python-deepmerge)) diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm index 1ee8255593..fcb05dbda6 100644 --- a/gnu/packages/messaging.scm +++ b/gnu/packages/messaging.scm @@ -3626,8 +3626,6 @@ (define-public python-harmony (base32 "1bm9xcnzpnpj6rlhbrnl2abwclzl7ivgh1vb5644y9mnhcs489js")))) (build-system python-build-system) - (native-inputs - (list python-tox)) (inputs (list python-librecaptcha python-keyring python-requests)) (synopsis "Discord account management") diff --git a/gnu/packages/mp3.scm b/gnu/packages/mp3.scm index 9dfce6313f..ccf105d7be 100644 --- a/gnu/packages/mp3.scm +++ b/gnu/packages/mp3.scm @@ -688,8 +688,7 @@ (define-public python-audioread (list gstreamer gst-plugins-base python-flit-core - python-pytest - python-tox)) + python-pytest)) (home-page "https://github.com/sampsyo/audioread") (synopsis "Decode audio files using whichever backend is available") (description diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm index 1b97853a59..96561fff3a 100644 --- a/gnu/packages/networking.scm +++ b/gnu/packages/networking.scm @@ -1941,7 +1941,7 @@ (define-public gandi.cli #t)))))) (native-inputs (list python-docutils ; for rst2man.py - python-pytest python-pytest-cov python-tox)) + python-pytest python-pytest-cov)) (propagated-inputs (list openssh)) ; used by gandi/cli/modules/iass.py (inputs diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index e57438b2ea..c2026f2433 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -2295,7 +2295,6 @@ (define-public python-pytest-qt (list python-pre-commit python-setuptools python-setuptools-scm - python-tox python-wheel)) (home-page "https://github.com/pytest-dev/pytest-qt") (synopsis "Pytest support for PyQt and PySide applications") @@ -3012,8 +3011,7 @@ (define-public python-nox (native-inputs (list python-hatchling python-jinja2 - python-pytest - python-tox)) + python-pytest)) (home-page "https://nox.thea.codes/") (synopsis "Flexible test automation") (description diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 83e66572e3..c6616f3ab6 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -893,8 +893,7 @@ (define-public python-scikit-survival python-pytest python-setuptools python-setuptools-scm - python-tomli - python-tox)) + python-tomli)) (home-page "https://github.com/sebp/scikit-survival") (synopsis "Survival analysis built on top of scikit-learn") (description "Scikit-survival is a Python module for survival analysis diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 76e13b3af2..c2c6578f2e 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -2974,7 +2974,6 @@ (define-public python-omnipath python-requests-mock python-setuptools python-setuptools-scm - python-tox python-wheel)) (home-page "https://omnipathdb.org/") (synopsis "Python client for the OmniPath web service") @@ -5826,7 +5825,7 @@ (define-public python-flask-htpasswd (build-system pyproject-build-system) (arguments (list #:tests? #false)) ;none included (propagated-inputs - (list python-flask python-passlib python-pyjwt python-tox)) + (list python-flask python-passlib python-pyjwt)) (native-inputs (list python-pytest python-setuptools python-wheel)) @@ -8916,7 +8915,6 @@ (define-public python-sanic python-setuptools python-slotscheck python-towncrier - python-tox python-types-ujson python-uvicorn python-wheel)) @@ -9040,7 +9038,6 @@ (define-public python-simple-websocket (native-inputs (list python-pytest python-pytest-cov python-setuptools - python-tox python-wheel)) (home-page "https://github.com/miguelgrinberg/simple-websocket") (synopsis "Simple WebSocket server and client for Python") diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index cd20064c95..e991fe97e8 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -1682,8 +1682,7 @@ (define-public python-lunr (list python-hatch-fancy-pypi-readme python-hatchling python-pytest - python-pytest-timeout - python-tox)) + python-pytest-timeout)) (propagated-inputs (list python-importlib-metadata python-typing-extensions)) (home-page @@ -3344,8 +3343,7 @@ (define-public python-bidict python-sortedcollections python-sortedcontainers python-sphinx - python-sphinx-autodoc-typehints - python-tox)) + python-sphinx-autodoc-typehints)) (arguments `(#:phases (modify-phases %standard-phases (add-after 'unpack 'relax-reqs @@ -5209,7 +5207,6 @@ (define-public python-jsonargparse python-pytest python-pytest-subtests python-responses - python-tox python-types-requests python-setuptools python-wheel)) @@ -6433,7 +6430,6 @@ (define-public python-ddlparse (list python-pytest python-pytest-cov python-setuptools - python-tox python-wheel)) (propagated-inputs (list python-pyparsing)) (home-page "https://github.com/shinichi-takii/ddlparse") @@ -7003,7 +6999,6 @@ (define-public python-virtualenv-clone (delete-file "tox.ini") (invoke "pytest" "-vvv" "tests"))))))) (native-inputs (list python-pytest - python-tox python-virtualenv python-wheel python-tomli @@ -12555,7 +12550,7 @@ (define-public python-honcho (base32 "1y0r8dw4pqcq7r4n58ixjdg1iy60lp0gxsd7d2jmhals16ij71rj")))) (build-system python-build-system) (native-inputs - (list python-pytest python-mock python-tox which)) ;for tests + (list python-pytest python-mock which)) ;for tests (propagated-inputs (list python-jinja2)) (arguments @@ -22772,9 +22767,7 @@ (define-public python-shshsh "1wzqyj1a6jj6cyv5ymzy834qm2lyq80yy1kfz0q0zayq9gm1cj7f")))) (build-system pyproject-build-system) (native-inputs - (list python-poetry-core - python-pytest - python-tox)) + (list python-poetry-core python-pytest)) (home-page "https://github.com/zqqqqz2000/shshsh") (synopsis "Write Shell commands simply and safely within Python") (description "This package provides a way to write Shell commands from @@ -38043,8 +38036,7 @@ (define-public python-ansicolors (base32 "1q3jqglkq4z0f6nkkn8bswcwqg012i2grrc27kabr8286dg4zycr")))) (build-system python-build-system) (native-inputs - (list python-tox - python-pytest-cov + (list python-pytest-cov unzip)) (home-page "https://github.com/jonathaneunice/colors/") (synopsis "ANSI colors for Python") diff --git a/gnu/packages/radio.scm b/gnu/packages/radio.scm index d2c8bee76b..51d00e68f4 100644 --- a/gnu/packages/radio.scm +++ b/gnu/packages/radio.scm @@ -3274,8 +3274,7 @@ (define-public chirp python-mox3 python-pytest python-pytest-mock - python-pyyaml - python-tox)) + python-pyyaml)) (inputs (list python-future python-importlib-resources diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm index da9f0e3483..36ad457ca2 100644 --- a/gnu/packages/terminals.scm +++ b/gnu/packages/terminals.scm @@ -1178,7 +1178,6 @@ (define-public python-halo (native-inputs (list python-nose python-setuptools - python-tox python-twine python-wheel)) (home-page "https://github.com/manrajgrover/halo") @@ -1209,7 +1208,6 @@ (define-public python-log-symbols (native-inputs (list python-nose python-setuptools - python-tox python-wheel)) (propagated-inputs (list python-colorama)) (home-page "https://github.com/manrajgrover/py-log-symbols") @@ -1241,7 +1239,6 @@ (define-public python-spinners (native-inputs (list python-nose python-setuptools - python-tox python-wheel)) (home-page "https://github.com/manrajgrover/py-spinners") (synopsis "Python library with graphical spinners for the terminal") diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm index 792ef1f3b3..004f170c25 100644 --- a/gnu/packages/textutils.scm +++ b/gnu/packages/textutils.scm @@ -1086,7 +1086,6 @@ (define-public txt2tags (base32 "0ik7gpr3gymgxnj0p86k8768kyxncbncv93zq67sbak3dbdl8hky")))) (build-system python-build-system) - (native-inputs (list python-tox)) (home-page "https://txt2tags.org") (synopsis "Convert between markup languages") (description From patchwork Thu Feb 27 14:27:22 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39396 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 3B0B427BBE2; Thu, 27 Feb 2025 14:40:58 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 7A4D327BBE9 for ; Thu, 27 Feb 2025 14:40:57 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnext-0005ow-Cf; Thu, 27 Feb 2025 09:34:23 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnewz-0003oI-Os for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:27 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnewz-0006Wg-88 for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:21 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=FR4zGY2Ocg7cor9w3rIlZWi62hdR/m2Z1PfPm7nteZQ=; b=b5EFqkpFQwJeSdXkgDSSolu1rrZknFOK8bhFrp1SghWT3qfM9YeI4bQDrRWwgXCofJYaRACV8jKIjvFwK2+DKdgQrxr29RtU6TxkhCjr7H8sBjeBaVrhfJgIDOSO04npDOJ3m3eRnLv5m3AQtCPqkolKAah1uWdwQiUigKUEPEQ+mi+yRjigPpvwN9IRTGCFUAvnA7wDb7jbCEVMJSS5HNllkxi1h7EFNY+0N5+Fjxb4CKKxCic5w9DmkKpeqjoVMJSjFHPZdzjcPMMGXHDHuYhCN7gKRJcYitD3U/NZ4LiEqF8cgIgrepLjND3kw3LokBdJ2AV3nrqruzit4ZAKcw==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnewz-0000wZ-1S for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:21 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 21/48] build-system/pyproject: Remove python-mypy native-input. 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gnu/packages/databases.scm | 1 - gnu/packages/engineering.scm | 2 -- gnu/packages/graphviz.scm | 1 - gnu/packages/machine-learning.scm | 3 --- gnu/packages/python-science.scm | 1 - gnu/packages/python-web.scm | 6 +++--- gnu/packages/python-xyz.scm | 13 +++++-------- gnu/packages/serialization.scm | 1 - gnu/packages/virtualization.scm | 3 +-- 10 files changed, 9 insertions(+), 23 deletions(-) diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 6b31414940..b4c29480ac 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -4630,7 +4630,6 @@ (define-public python-poliastro (setenv "HOME" "/tmp")))))) (native-inputs (list python-hypothesis - python-mypy python-flit-core python-pytest python-pytest-cov diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index 3b8d1d9d23..085a1d7cd0 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -4305,7 +4305,6 @@ (define-public python-psycopg "-c" "CREATE DATABASE nixbld;")))))))) (native-inputs (list python-cython-3 - python-mypy python-psycopg-pool python-pytest python-pytest-asyncio diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index cc84a760e9..fe550d8471 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -4550,7 +4550,6 @@ (define-public uranium graphviz pkg-config python-pytest - python-mypy python-certifi python-twisted)) (propagated-inputs @@ -4753,7 +4752,6 @@ (define-public cura (build-system qt-build-system) (native-inputs (list python-certifi - python-mypy python-pytest python-requests)) (inputs diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm index 0d3db31212..6bfe5325ac 100644 --- a/gnu/packages/graphviz.scm +++ b/gnu/packages/graphviz.scm @@ -225,7 +225,6 @@ (define-public python-uqbar (native-inputs (list graphviz python-isort - python-mypy python-pytest python-pytest-cov python-setuptools diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 2caa64cc08..649648ac4e 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -2149,7 +2149,6 @@ (define-public python-imbalanced-learn (propagated-inputs (list python-joblib python-numpy python-scikit-learn python-scipy python-threadpoolctl)) (native-inputs (list python-keras - python-mypy python-pandas python-pytest python-pytest-cov @@ -5319,7 +5318,6 @@ (define-public python-captum python-flask-compress python-ipython python-ipywidgets - python-mypy python-parameterized python-pytest python-pytest-cov @@ -5507,7 +5505,6 @@ (define-public python-torchmetrics (list python-cloudpickle python-fire python-mir-eval - python-mypy python-pandas python-psutil python-pytest diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index c6616f3ab6..ad60378944 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -439,7 +439,6 @@ (define-public python-scipy '()) (list python-matplotlib python-mpmath - python-mypy python-numpy python-numpydoc python-pydata-sphinx-theme diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index c2c6578f2e..5b33ed4568 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -564,7 +564,6 @@ (define-public python-huggingface-hub python-fastapi python-jedi python-jinja2 - python-mypy python-numpy python-pillow python-pydantic-2 @@ -1216,7 +1215,9 @@ (define-public python-asgiref (base32 "146mhkn3zp2bqf7j6r3chdlvfzgs5x1lrnqahsllgjdyl20bshy3")))) (build-system pyproject-build-system) (native-inputs - (list python-mypy python-pytest python-pytest-asyncio python-setuptools + (list python-pytest + python-pytest-asyncio + python-setuptools python-wheel)) (home-page "https://github.com/django/asgiref/") (synopsis "ASGI specs, helper code, and adapters") @@ -10303,7 +10304,6 @@ (define-public python-starsessions python-starlette)) (native-inputs (list python-httpx - python-mypy python-poetry-core python-pytest python-pytest-asyncio diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index e991fe97e8..1cce5e3a54 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -7610,7 +7610,7 @@ (define-public kalamine ;; TODO: Add python-pytest-ruff to native-inputs once it has been ;; packaged. (native-inputs - (list python-hatchling python-mypy python-pytest)) + (list python-hatchling python-pytest)) (home-page "https://github.com/OneDeadKey/kalamine") (synopsis "Keyboard layout maker") (description @@ -8850,8 +8850,7 @@ (define-public python-pydantic-cli (propagated-inputs (list python-pydantic)) (native-inputs - (list python-mypy - python-pytest)) + (list python-pytest)) (home-page "https://github.com/mpkocher/pydantic-cli") (synopsis "Turn Pydantic defined data models into CLI tools") (description @@ -27090,7 +27089,6 @@ (define-public python-apispec (build-system pyproject-build-system) (native-inputs (list python-flit-core - python-mypy python-openapi-spec-validator python-pytest)) (propagated-inputs @@ -28511,8 +28509,7 @@ (define-public python-typeguard (base32 "06y22d1f5dhpyl71wbhsaibig5hvc2v44pw795yb8lxl02fsh8hd")))) (build-system pyproject-build-system) (native-inputs - (list python-mypy - python-pytest + (list python-pytest python-setuptools python-setuptools-scm python-typing-extensions @@ -38256,7 +38253,7 @@ (define-public python-verspec (base32 "07n06wv85fm4vl1ird2mja0823js3x322wgs9gdnq1djjyk4ql64")))) (build-system python-build-system) - (native-inputs (list python-mypy python-pretend python-pytest)) + (native-inputs (list python-pretend python-pytest)) (arguments `(#:phases (modify-phases %standard-phases (replace 'check @@ -39040,7 +39037,7 @@ (define-public python-catalogue "0srdxiil2xys8q1gpc1nvzhvis3a33d8a7amk2i1rlpbg6p36pak")))) (build-system python-build-system) (native-inputs (list python-pytest)) - (inputs (list python python-zipp python-typing-extensions python-mypy)) + (inputs (list python python-zipp python-typing-extensions)) (home-page "https://github.com/explosion/catalogue") (synopsis "Lightweight function registries for your library") (description diff --git a/gnu/packages/serialization.scm b/gnu/packages/serialization.scm index c0f7001fa0..8d6abf094b 100644 --- a/gnu/packages/serialization.scm +++ b/gnu/packages/serialization.scm @@ -788,7 +788,6 @@ (define-public python-msgspec (native-inputs (list python-attrs python-gcovr python-msgpack - python-mypy python-pytest python-setuptools-scm python-versioneer diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm index bde357763f..a6872a3f1f 100644 --- a/gnu/packages/virtualization.scm +++ b/gnu/packages/virtualization.scm @@ -2986,8 +2986,7 @@ (define-public python-transient (("==") ">="))))))) (native-inputs - (list python-mypy - python-pyhamcrest + (list python-pyhamcrest python-setuptools python-twine python-wheel)) From patchwork Thu Feb 27 14:27:23 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39360 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 9F19F27BBE9; Thu, 27 Feb 2025 14:35:50 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id E59F627BBE2 for ; Thu, 27 Feb 2025 14:35:48 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnez0-0006kY-QR; 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[native-inputs]: Remove python-mypy. [arguments]<#:phases>: Add phase to remove python-mypy native-input. --- gnu/packages/python-xyz.scm | 17 +++++++++++++---- 1 file changed, 13 insertions(+), 4 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 1cce5e3a54..657ac6e4d0 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -17202,13 +17202,22 @@ (define-public python-immutables (version "0.21") (source (origin - (method url-fetch) - (uri (pypi-uri "immutables" version)) + (method git-fetch) + (uri (git-reference + (url "https://github.com/MagicStack/immutables") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 "0jpw9nr2mbzqykigjhqa3a095bx7krwsnmjcxcpj944p8kqglpxm")))) + (base32 "1p5g20y7di5xglk6yyhb010vdmz73q9fsxpq0cm2gksp8mj856y1")))) (build-system pyproject-build-system) + (arguments + (list #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'remove-mypy-dependency + (lambda _ + (delete-file "tests/test_mypy.py") + (delete-file "tests/conftest.py")))))) (native-inputs - (list python-mypy python-pytest python-setuptools python-wheel)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/MagicStack/immutables") (synopsis "High-performance immutable mapping type for Python") (description From patchwork Thu Feb 27 14:27:24 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39375 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id A25D027BBE9; Thu, 27 Feb 2025 14:38:03 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,TVD_SPACE_RATIO,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D35AC27BBEB for ; Thu, 27 Feb 2025 14:38:02 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnezF-00075w-8N; Thu, 27 Feb 2025 09:35:45 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnex0-0003pU-Uh for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:27 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnex0-0006Wv-MP for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:22 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=fYIGFVV18bPgJXNOA8SXTGRTkdDvoImPBcUL3ZqP5aY=; b=VDgOH6CUjHI3ZLjY08tVnL4G4EXd3tKjYobtk3UvXbwpu7Bz7PvpTllauwD7NHeAIvRuLs2md1MskOaxJN96H0Kf2b9XvYIhU9N5eMTuWvtRPZgTx6+mwfLv2AMk8A5SRF/iqNX4WzNpJCw0QCOXeF8XFNTILp/hLrSv23mWCUPh4gSg1NG+m7UjIER8ovEAd0EjSkVAnvKkDAi0CKjEy5NjqjLOIy5nUPXrz5tbWbUcyCXILDcKIbmDtGA/AaBqZ3FoQKKwHa7Tq9FRRSNa1kEZVDocMUdQMVHP/qSs9JFBkvfnjYShq/H/9aL9A4837x/MCtgLzx/FskR97htZGw==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnex0-0000wo-F7 for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:22 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 23/48] build-system/pyproject: Remove python-isort native-input. 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bh=fYIGFVV18bPgJXNOA8SXTGRTkdDvoImPBcUL3ZqP5aY=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1740666672; v=1; b=yqtmUowP0pbZAhfN0I0zFG6nj1SNSPNZdQyoWmQDcO6FKGu+qAgvO49jzwNIyW8QH5ofUv0W M1cYziJXCD5i4k3Z3he9l/3QLUIZA0Vc9I5Q/cNNoIvCPyYynedohXNjseRE/rGKZd0iC9mSH35 mCRfWue/vRcZpkorCAawfPuXl0Vs51lNkpzMlrAuCXECxfYJL4yi5HQh1F5Na4Y1LRqcSL687Ud YLKipOohCAHbLW9SH8w5/Yxu7mwtRTXBwWphzXxWcm95eErH2PBI6SGhiQyIyAltvKZFo6W3FIF ZUpSpQTkXBzA9fJgarY2bPISYsJeQXpZedHBVqqJVVy5w== X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-to: Nicolas Graves X-ACL-Warn: , Nicolas Graves via Guix-patches X-Patchwork-Original-From: Nicolas Graves via Guix-patches via From: Nicolas Graves Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (python-metacells, python-cooler, scvelo) * gnu/packages/databases.scm (aerich) * gnu/packages/finance.scm (python-trezor) * gnu/packages/gettext.scm (mdpo) * gnu/packages/graphviz.scm (python-uqbar) * gnu/packages/machine-learning.scm (python-pymanopt, python-funsor) * gnu/packages/mail.scm (python-hyperkitty, postorius) * gnu/packages/protobuf.scm (python-pure-protobuf) * gnu/packages/python-web.scm (python-zeep, python-ovh, python-tinycss2) * gnu/packages/python-xyz.scm (python-archspec) * gnu/packages/statistics.scm (python-statsmodels) * gnu/packages/virtualization.scm (python-qemu-qmp) [native-inputs]: Remove python-isort. --- gnu/packages/bioinformatics.scm | 3 --- gnu/packages/databases.scm | 1 - gnu/packages/finance.scm | 1 - gnu/packages/gettext.scm | 1 - gnu/packages/graphviz.scm | 1 - gnu/packages/machine-learning.scm | 4 +--- gnu/packages/mail.scm | 2 -- gnu/packages/protobuf.scm | 2 +- gnu/packages/python-web.scm | 4 +--- gnu/packages/python-xyz.scm | 3 +-- gnu/packages/statistics.scm | 1 - gnu/packages/virtualization.scm | 1 - 12 files changed, 4 insertions(+), 20 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index bb8ac5c800..4294016f44 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3168,7 +3168,6 @@ (define-public python-metacells python-threadpoolctl python-umap-learn)) (native-inputs (list python-bumpversion - python-isort python-mypy python-mypy-extensions python-pandas-stubs @@ -19935,7 +19934,6 @@ (define-public python-cooler python-simplejson)) (native-inputs (list python-hatchling - python-isort python-pytest python-pytest-cov)) ;; Almost all the projects of the Mirnylab are moved under Open2C umbrella @@ -24030,7 +24028,6 @@ (define-public scvelo (propagated-inputs (list python-anndata python-hnswlib - python-isort python-igraph python-loompy python-louvain diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index 085a1d7cd0..df2045db9d 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -3459,7 +3459,6 @@ (define-public aerich (list poetry python-bandit python-cryptography - python-isort python-pydantic python-pytest python-pytest-asyncio diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm index f3be674c01..3af525da18 100644 --- a/gnu/packages/finance.scm +++ b/gnu/packages/finance.scm @@ -1160,7 +1160,6 @@ (define-public python-trezor python-typing-extensions)) (native-inputs ; Only needed for running the tests (list protobuf - python-isort python-pillow python-protobuf python-pyqt diff --git a/gnu/packages/gettext.scm b/gnu/packages/gettext.scm index 29cdbab915..841d3e0c8b 100644 --- a/gnu/packages/gettext.scm +++ b/gnu/packages/gettext.scm @@ -228,7 +228,6 @@ (define-public mdpo (list python-bump2version python-flake8-implicit-str-concat python-flake8-print - python-isort python-pytest python-pytest-cov python-sphinx diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm index 6bfe5325ac..33ddbeba42 100644 --- a/gnu/packages/graphviz.scm +++ b/gnu/packages/graphviz.scm @@ -224,7 +224,6 @@ (define-public python-uqbar and not test_sphinx_book_text_broken_strict"))) (native-inputs (list graphviz - python-isort python-pytest python-pytest-cov python-setuptools diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 649648ac4e..8c1e99ba99 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -229,8 +229,7 @@ (define-public python-funsor (propagated-inputs (list python-makefun python-multipledispatch python-numpy python-opt-einsum python-typing-extensions)) - (native-inputs (list python-isort - python-nbsphinx + (native-inputs (list python-nbsphinx python-pandas python-pillow python-pyro-api @@ -1143,7 +1142,6 @@ (define-public python-pymanopt (propagated-inputs (list python-numpy python-scipy)) (native-inputs (list python-autograd python-flake8-bugbear - python-isort python-matplotlib python-pytest python-pytest-cov diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index cffbca087a..b353e5cf51 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -3813,7 +3813,6 @@ (define-public python-hyperkitty python-django-rest-framework python-elasticsearch python-flufl-lock - python-isort python-lxml python-mailmanclient python-mistune @@ -3864,7 +3863,6 @@ (define-public postorius python-django-mailman3)) (native-inputs (list python-beautifulsoup4 - python-isort python-mock python-pdm-backend python-pytest diff --git a/gnu/packages/protobuf.scm b/gnu/packages/protobuf.scm index 203e4909d6..487c03fa94 100644 --- a/gnu/packages/protobuf.scm +++ b/gnu/packages/protobuf.scm @@ -502,7 +502,7 @@ (define-public python-pure-protobuf (base32 "15dp5pvazd0jx4wzzh79080ah7hkpd3axh40al9vhzs2hf3v90hx")))) (build-system python-build-system) (native-inputs - (list python-pytest python-pytest-cov python-isort)) + (list python-pytest python-pytest-cov)) (arguments `(#:phases (modify-phases %standard-phases diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 5b33ed4568..2248d62195 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -1601,8 +1601,7 @@ (define-public python-ovh (build-system pyproject-build-system) (arguments (list #:tests? #f)) ; XXX: tests require networking (propagated-inputs (list python-requests)) - (native-inputs (list python-isort - python-pytest + (native-inputs (list python-pytest python-pytest-cov python-setuptools python-sphinx @@ -10131,7 +10130,6 @@ (define-public python-zeep python-flake8-blind-except python-flake8-debugger python-freezegun - python-isort python-pretend python-pytest python-pytest-asyncio diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 657ac6e4d0..74cec98420 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -396,8 +396,7 @@ (define-public python-archspec python-scikit-learn python-tables python-typing-extensions)) - (native-inputs (list python-isort - python-poetry-core + (native-inputs (list python-poetry-core python-pytest python-pytest-cov)) (home-page "https://github.com/archspec/archspec") diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 7a02786ab6..0344074366 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2669,7 +2669,6 @@ (define-public python-statsmodels (native-inputs (list python-colorama python-cython - python-isort python-joblib python-matplotlib python-pytest diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm index a6872a3f1f..d1e2130980 100644 --- a/gnu/packages/virtualization.scm +++ b/gnu/packages/virtualization.scm @@ -2120,7 +2120,6 @@ (define-public python-qemu-qmp (native-inputs (list python-avocado-framework python-flake8 - python-isort python-setuptools python-setuptools-scm python-wheel)) From patchwork Thu Feb 27 14:27:25 2025 Content-Type: text/plain; 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gnu/packages/gettext.scm | 1 - gnu/packages/jupyter.scm | 4 +--- gnu/packages/machine-learning.scm | 6 ++---- gnu/packages/python-check.scm | 2 +- gnu/packages/python-web.scm | 5 ++--- gnu/packages/python-xyz.scm | 2 -- gnu/packages/terminals.scm | 1 - gnu/packages/virtualization.scm | 1 - 10 files changed, 8 insertions(+), 22 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4294016f44..d81791a724 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3176,7 +3176,6 @@ (define-public python-metacells python-setuptools python-sphinx python-sphinx-rtd-theme - python-twine python-wheel)) (home-page "https://github.com/tanaylab/metacells.git") (synopsis "Single-cell RNA Sequencing Analysis") @@ -3203,8 +3202,7 @@ (define-public python-ngesh (base32 "07sj4x95b5hvx57pw24f80sk4ag4hkg1z6wzym3pzi8n5gn85n1z")))) (build-system pyproject-build-system) (propagated-inputs (list python-ete3 python-numpy python-six)) - (native-inputs (list python-pytest python-twine - python-wheel)) + (native-inputs (list python-pytest python-wheel)) (home-page "https://github.com/tresoldi/ngesh") (synopsis "Library for phylogenetic tree simulation") (description @@ -7775,8 +7773,7 @@ (define-public python-pyahocorasick (sha256 (base32 "1fsnivwcw56q7lwz41c5kbfvxv0v17mmkx43i2a293l49fxj08j8")))) (build-system pyproject-build-system) - (native-inputs (list python-pytest python-twine python-setuptools - python-wheel)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/WojciechMula/pyahocorasick") (synopsis "Library for finding multiple key strings in text") (description diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm index 3af525da18..30ed44aea9 100644 --- a/gnu/packages/finance.scm +++ b/gnu/packages/finance.scm @@ -2072,7 +2072,6 @@ (define-public fava python-pytest python-pytest-cov python-setuptools - python-twine python-types-setuptools python-types-simplejson python-wheel)) diff --git a/gnu/packages/gettext.scm b/gnu/packages/gettext.scm index 841d3e0c8b..25f4efe1fc 100644 --- a/gnu/packages/gettext.scm +++ b/gnu/packages/gettext.scm @@ -233,7 +233,6 @@ (define-public mdpo python-sphinx python-sphinx-argparse python-sphinx-rtd-theme - python-twine python-yamllint)) (propagated-inputs (list python-polib python-pymd4c)) diff --git a/gnu/packages/jupyter.scm b/gnu/packages/jupyter.scm index 8f900d3f88..70c13115de 100644 --- a/gnu/packages/jupyter.scm +++ b/gnu/packages/jupyter.scm @@ -546,8 +546,7 @@ (define-public python-hatch-jupyter-builder (native-inputs (list python-pytest python-pytest-cov python-pytest-mock - python-tomli - python-twine)) + python-tomli)) (home-page "https://github.com/jupyterlab/hatch-jupyter-builder") (synopsis "Hatch plugin to help build Jupyter packages") (description @@ -1171,7 +1170,6 @@ (define-public python-papermill python-recommonmark python-requests python-setuptools - python-twine python-wheel)) (home-page "https://github.com/nteract/papermill") (synopsis "Parameterize and run Jupyter and nteract Notebooks") diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 8c1e99ba99..a7c9e2dc99 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -5888,8 +5888,7 @@ (define-public python-linear-operator (native-inputs (list python-flake8-print python-pytest python-setuptools - python-setuptools-scm - python-twine)) + python-setuptools-scm)) (home-page "https://github.com/cornellius-gp/linear_operator/") (synopsis "Linear operator implementation") (description "LinearOperator is a PyTorch package for abstracting away the @@ -5918,8 +5917,7 @@ (define-public python-gpytorch (native-inputs (list python-flake8-print python-nbval python-pytest - python-setuptools - python-twine)) + python-setuptools)) (home-page "https://gpytorch.ai") (synopsis "Implementation of Gaussian Processes in PyTorch") (description diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index c2026f2433..35e043b3c8 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -778,7 +778,7 @@ (define-public python-testfixtures (native-inputs (list python-pytest python-pytest-cov ;;("python-pytest-django" ,python-pytest-django) - python-twine python-wheel)) + python-wheel)) (synopsis "Tests components for Python") (description "Testfixtures is a collection of helpers and mock objects that are useful when writing automated tests in Python.") diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 2248d62195..1c419c6722 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -426,8 +426,7 @@ (define-public python-eventlet (native-inputs (list python-hatch-vcs python-hatchling - python-pytest - python-twine)) + python-pytest)) (propagated-inputs (list python-dnspython python-greenlet @@ -7463,7 +7462,7 @@ (define-public python-translation-finder (list python-chardet python-pathlib2 python-ruamel.yaml python-six)) (native-inputs (list python-codecov python-codacy-coverage python-pytest-cov - python-pytest-runner python-twine)) + python-pytest-runner)) (home-page "https://weblate.org/") (synopsis "Translation file finder for Weblate") (description "This package provides a function to find translation file in diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 74cec98420..f0a65a968d 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -3732,7 +3732,6 @@ (define-public python-cftime python-pytest python-setuptools python-sphinx - python-twine python-wheel)) (home-page "https://unidata.github.io/cftime/") (synopsis "Library for time handling") @@ -33509,7 +33508,6 @@ (define-public python-eliot python-sphinx python-sphinx-rtd-theme python-testtools - python-twine python-twisted python-wheel)) (home-page "https://github.com/itamarst/eliot/") diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm index 36ad457ca2..de47d67e36 100644 --- a/gnu/packages/terminals.scm +++ b/gnu/packages/terminals.scm @@ -1178,7 +1178,6 @@ (define-public python-halo (native-inputs (list python-nose python-setuptools - python-twine python-wheel)) (home-page "https://github.com/manrajgrover/halo") (synopsis "Python library to display graphical spinners in the terminal") diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm index d1e2130980..1d9da88eb6 100644 --- a/gnu/packages/virtualization.scm +++ b/gnu/packages/virtualization.scm @@ -2987,7 +2987,6 @@ (define-public python-transient (native-inputs (list python-pyhamcrest python-setuptools - python-twine python-wheel)) (propagated-inputs (list python-beautifultable From patchwork Thu Feb 27 14:27:26 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39367 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 8AE9027BBE2; Thu, 27 Feb 2025 14:37:16 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.3 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED,URIBL_SBL_A autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 0EC6627BBE9 for ; Thu, 27 Feb 2025 14:37:11 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tney7-0005tx-FS; Thu, 27 Feb 2025 09:34:35 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnewz-0003oA-Bf for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:27 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnewy-0006Wa-Mh for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:20 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=0M8SwHbFEAz4Dz5R2+OQpqa35TxOlH+EhxikZ/fX0HA=; b=kS5Zi/fRBk9/yRN2W9B/LAe8+o2VgJJW2ViMcHzD+9XkABD/Avq0ed7CRupnsHGtJK+FMTQnSMyJHEKiMzVvdqmo984PMYlXnqEO0XmVqIfI/p+NFh/JHEOeBHA306A7hTDeHhusDKKsbC6zsbLABdo8C8dWs+mSJ2q9vZU8P+7xxMs4uMJOib6oFBR2M2u1uicgoaoq2mhmATi73S5hFyteptDyuBpFxe7j/1ZB0me/fRzlcInDwbgyMdeeElB86q2bPa7UIh7LyJx/DY+hsoRJt4N2i433Uu7mdEUKwozu9n+Wsv9Gm39t1p9oPh439eS/4BDeKUjEFez95ztuTA==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnewy-0000wR-Ff for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:20 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 25/48] build-system/pyproject: Remove python-pytest-cov native-input. 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List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-to: Nicolas Graves X-ACL-Warn: , Nicolas Graves via Guix-patches X-Patchwork-Original-From: Nicolas Graves via Guix-patches via From: Nicolas Graves Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/astronomy.scm (python-sncosmo, python-jwst, python-wiimatch, python-astroml, python-casa-formats-io, python-cdflib, python-poliastro, python-tweakwcs) * gnu/packages/audio.scm (python-resampy, python-librosa, python-pysox) * gnu/packages/backup.scm (borgmatic) * gnu/packages/bioinformatics.scm (python-bed-reader, python-liana-py, python-metacells, python-pysnptools, python-pairtools, cwltool, python-biom-format, python-pyfaidx, python-cooler, python-screed) * gnu/packages/build-tools.scm (meson-python) * gnu/packages/check.scm (python-pytest-nunit, python-pytest-enabler, python-pytest-perf, python-pyhamcrest) * gnu/packages/cpp.scm (cpplint) * gnu/packages/databases.scm (python-redis) * gnu/packages/dav.scm (vdirsyncer, radicale) * gnu/packages/django.scm (python-django-redis, python-django-cleanup, python-django-extensions) * gnu/packages/embedded.scm (mbed-tools) * gnu/packages/engineering.scm (python-scikit-rf) * gnu/packages/finance.scm (fava) * gnu/packages/fontutils.scm (psautohint) * gnu/packages/geo.scm (python-pyogrio, python-geopandas, python-fiona, python-cartopy) * gnu/packages/gettext.scm (mdpo) * gnu/packages/gpodder.scm (gpodder) * gnu/packages/graphviz.scm (python-graphviz, python-uqbar) * gnu/packages/jupyter.scm (python-nbclassic, python-jupyterlab-server, python-hatch-jupyter-builder, python-nbclient, python-papermill, python-jupyter-packaging, python-jupyter-server, python-jupyterlite-core, python-ipydatawidgets) * gnu/packages/machine-learning.scm (python-pymanopt, python-botorch, python-persim, python-scikit-learn-extra, python-imbalanced-learn, python-keras-application, python-keras-preprocessing, python-keras, python-tensorly, python-pytorch-geometric, python-captum, python-torchmetrics) * gnu/packages/mastodon.scm (python-mastodon-py) * gnu/packages/maths.scm (python-libensemble) * gnu/packages/matrix.scm (python-matrix-nio) * gnu/packages/messaging.scm (zulip-term) * gnu/packages/music.scm (beets, stargate) * gnu/packages/networking.scm (gandi.cli) * gnu/packages/package-management.scm (conda, python-conda-package-handling) * gnu/packages/patchutils.scm (pwclient) * gnu/packages/protobuf.scm (python-pure-protobuf) * gnu/packages/python-check.scm (python-pandas-vet, python-testfixtures, python-vcrpy, python-pytest-filter-subpackage, python-atpublic, python-sybil, python-vulture) * gnu/packages/python-compression.scm (python-zipstream-ng, python-multivolumefile, python-pybcj, python-bcj-cffi, python-pyppmd, python-ppmd-cffi, python-py7zr) * gnu/packages/python-crypto.scm (python-cryptography, python-trustme, python-certauth) * gnu/packages/python-science.scm (python-scikit-misc, python-mpl-scatter-density, python-modin, python-plotnine, python-pynetdicom, python-scipy, python-pandaparallel, python-pyts, python-usetplot, python-pingouin, python-opt-einsum, python-salib) * gnu/packages/python-web.scm (python-devpi-process, python-aiohappyeyeballs, python-cheroot, python-jsonpickle, python-flask-babel, python-url-normalize, python-elasticsearch, python-hupper, python-simple-websocket, python-apiron, python-huggingface-hub, python-portend, python-aiosignal, python-aiostream, python-ovh, python-cbor2, python-httplib2, parfive, python-jose, python-pyscss, python-mechanicalsoup, python-priority, hypercorn, python-aioftp, python-oauthlib, python-tinycss, python-cssselect2, python-httpcore, python-wsgiprox, python-venusian, python-siosocks, python-zeep, gunicorn, python-warcio) * gnu/packages/python-xyz.scm (python-archspec, python-colorcet, python-echo, python-rich-tables, python-babel, python-pymarshal, python-expandvars, autokey, python-lsp-jsonrpc, python-pillow, python-property-manager, python-cairocffi, python-jupyter-core, python-ipykernel, python-pubmed-parser, python-urwid, python-prettytable, python-xdoctest, python-waitress, python-rope, python-wcwidth, python-pyproject-api, python-async-lru, python-numcodecs, python-dictpath, python-platformdirs, python-multipart, python-apprise, python-janus, python-logbook, python-affine, python-mdit-py-plugins, python-pint, python-rasterio, python-bidict, python-can, dosage, python-contourpy, python-portalocker, python-extension-helpers, python-mizani, python-cligj, python-ddlparse, python-robotframework-pythonlibcore, python-lsp-server, python-sparse, python-pikepdf, python-imageio, python-manimpango, python-importlib-resources, python-jaraco-classes, python-jaraco-collections, python-jaraco-context, python-jaraco-functools, python-jaraco-test, python-jaraco-text, python-ipyparallel, python-three-merge, python-seaborn, python-sentry-sdk, python-sniffio, python-get-version, python-path, python-pip-run, python-debugpy, python-notebook, python-cookiecutter, python-pyqtgraph, python-pymemcache, python-natsort, python-mwclient, python-flasgger, python-tempora, python-outcome, python-apscheduler, python-iocapture, python-argh, python-flit, python-watchdog, python-cmd2, python-inform, python-qtsass, python-scikit-build, python-minikanren, python-tablib, python-ansicolors, python-shtab, python-scooby, dynaconf, python-pyan3, python-numpydoc, python-loguru) * gnu/packages/rdf.scm (python-rdflib, python-rdflib-6) * gnu/packages/simulation.scm (python-fenics-dijitso) * gnu/packages/sphinx.scm (python-sphinx-design, python-sphinx-gallery) * gnu/packages/statistics.scm (python-patsy, python-rchitect, python-pymc, python-emcee, python-rpy2) * gnu/packages/task-management.scm (todoman) * gnu/packages/telegram.scm (tgcli) * gnu/packages/textutils.scm (python-panflute) * gnu/packages/time.scm (python-arrow, python-tzlocal) * gnu/packages/vpn.scm (sshuttle) * gnu/packages/web.scm (anonip, python-tibanna) * gnu/packages/wm.scm (qtile) [native-inputs]: Remove python-pytest-cov. --- gnu/packages/astronomy.scm | 9 +- gnu/packages/audio.scm | 5 +- gnu/packages/backup.scm | 1 - gnu/packages/bioinformatics.scm | 16 +-- gnu/packages/build-tools.scm | 1 - gnu/packages/check.scm | 5 +- gnu/packages/cpp.scm | 1 - gnu/packages/databases.scm | 1 - gnu/packages/dav.scm | 2 - gnu/packages/django.scm | 3 - gnu/packages/embedded.scm | 1 - gnu/packages/engineering.scm | 1 - gnu/packages/fediverse.scm | 1 - gnu/packages/finance.scm | 1 - gnu/packages/fontutils.scm | 1 - gnu/packages/geo.scm | 4 +- gnu/packages/gettext.scm | 1 - gnu/packages/gpodder.scm | 1 - gnu/packages/graphviz.scm | 2 - gnu/packages/jupyter.scm | 12 +- gnu/packages/machine-learning.scm | 20 +--- gnu/packages/maths.scm | 1 - gnu/packages/matrix.scm | 1 - gnu/packages/messaging.scm | 4 +- gnu/packages/music.scm | 2 - gnu/packages/networking.scm | 2 +- gnu/packages/package-management.scm | 2 - gnu/packages/patchutils.scm | 2 +- gnu/packages/protobuf.scm | 2 +- gnu/packages/python-check.scm | 10 +- gnu/packages/python-compression.scm | 11 +- gnu/packages/python-crypto.scm | 4 +- gnu/packages/python-science.scm | 21 ++-- gnu/packages/python-web.scm | 68 ++++-------- gnu/packages/python-xyz.scm | 163 ++++++++++------------------ gnu/packages/rdf.scm | 4 +- gnu/packages/simulation.scm | 1 - gnu/packages/sphinx.scm | 2 - gnu/packages/statistics.scm | 7 +- gnu/packages/task-management.scm | 1 - gnu/packages/telegram.scm | 1 - gnu/packages/textutils.scm | 1 - gnu/packages/time.scm | 2 - gnu/packages/vpn.scm | 1 - gnu/packages/web.scm | 3 +- gnu/packages/wm.scm | 1 - 46 files changed, 117 insertions(+), 289 deletions(-) diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index b4c29480ac..7384da6452 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -1952,7 +1952,7 @@ (define-public python-astroml (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-astropy python-matplotlib python-numpy python-scikit-learn python-scipy)) - (native-inputs (list python-pytest-astropy-header python-pytest-cov + (native-inputs (list python-pytest-astropy-header python-pytest python-pytest-doctestplus python-pytest-remotedata python-wheel)) (home-page "https://astroml.org") @@ -2022,7 +2022,6 @@ (define-public python-casa-formats-io (invoke "python" "setup.py" "build_ext" "--inplace")))))) (native-inputs (list python-pytest - python-pytest-cov python-pytest-openfiles python-setuptools python-wheel)) @@ -2096,7 +2095,6 @@ (define-public python-cdflib (native-inputs (list python-astropy-minimal python-pytest - python-pytest-cov python-pytest-remotedata python-setuptools python-setuptools-scm @@ -3422,7 +3420,6 @@ (define-public python-sncosmo python-cython python-pytest python-pytest-astropy - python-pytest-cov python-setuptools python-wheel)) (home-page "https://sncosmo.readthedocs.org") @@ -4220,7 +4217,6 @@ (define-public python-jwst python-wiimatch)) (native-inputs (list python-colorama python-pytest - python-pytest-cov python-pytest-doctestplus python-pytest-openfiles python-requests-mock @@ -4632,7 +4628,6 @@ (define-public python-poliastro (list python-hypothesis python-flit-core python-pytest - python-pytest-cov python-pytest-doctestplus python-pytest-mpl python-pytest-mypy)) @@ -6703,7 +6698,6 @@ (define-public python-tweakwcs python-stsci-stimage)) (native-inputs (list python-pytest - python-pytest-cov python-scipy python-setuptools python-setuptools-scm @@ -6827,7 +6821,6 @@ (define-public python-wiimatch (build-system pyproject-build-system) (propagated-inputs (list python-numpy python-scipy)) (native-inputs (list python-pytest - python-pytest-cov python-pytest-doctestplus python-setuptools-scm python-wheel)) diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm index d392cd2a73..3c4498d38c 100644 --- a/gnu/packages/audio.scm +++ b/gnu/packages/audio.scm @@ -6644,7 +6644,7 @@ (define-public python-pysox (propagated-inputs (list python-numpy python-typing-extensions)) (native-inputs - (list sox python-pytest python-pytest-cov python-soundfile)) + (list sox python-pytest python-soundfile)) (home-page "https://github.com/rabitt/pysox") (synopsis "Python wrapper around SoX") (description "@code{python-pysox} is a wrapper around the @command{sox} @@ -6674,7 +6674,7 @@ (define-public python-resampy (propagated-inputs (list python-numba python-numpy python-scipy python-six)) (native-inputs - (list python-pytest python-pytest-cov python-setuptools python-wheel)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/bmcfee/resampy") (synopsis "Efficient signal resampling") (description @@ -6729,7 +6729,6 @@ (define-public python-librosa (list python-matplotlib python-packaging python-pytest - python-pytest-cov python-resampy python-setuptools python-wheel)) diff --git a/gnu/packages/backup.scm b/gnu/packages/backup.scm index 13c5590f55..d3e6f7e16d 100644 --- a/gnu/packages/backup.scm +++ b/gnu/packages/backup.scm @@ -1375,7 +1375,6 @@ (define-public borgmatic (native-inputs (list python-flexmock python-pytest - python-pytest-cov python-setuptools python-wheel)) (inputs diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d81791a724..5cb3f86853 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2272,7 +2272,6 @@ (define-public python-bed-reader (when tests? (apply invoke "pytest" "-v" #$output test-flags))))))) (native-inputs (list python-pytest - python-pytest-cov python-pytest-datadir python-pytest-doctestplus python-recommonmark @@ -3051,7 +3050,7 @@ (define-public python-liana-py python-tqdm tzdata)) (native-inputs - (list python-poetry-core python-pytest python-pytest-cov)) + (list python-poetry-core python-pytest)) (home-page "https://github.com/saezlab/liana-py") (synopsis "LIANA is a ligand-receptor analysis framework") (description "This is a Ligand-Receptor inference framework. The @@ -3172,7 +3171,6 @@ (define-public python-metacells python-mypy-extensions python-pandas-stubs python-pytest - python-pytest-cov python-setuptools python-sphinx python-sphinx-rtd-theme @@ -3637,7 +3635,6 @@ (define-public python-pysnptools python-scipy)) (native-inputs (list python-pytest - python-pytest-cov python-pytest-datadir python-pytest-doctestplus python-setuptools @@ -3923,7 +3920,8 @@ (define-public python-biom-format ;;python-scikit-bio ;mutually recursive dependency python-scipy)) (native-inputs - (list python-cython python-pytest python-pytest-cov + (list python-cython + python-pytest python-wheel)) (home-page "https://www.biom-format.org") (synopsis "Biological Observation Matrix (BIOM) format utilities") @@ -3971,7 +3969,6 @@ (define-public python-pairtools (native-inputs (list python-cython python-pytest - python-pytest-cov python-setuptools python-wheel)) (propagated-inputs @@ -6664,7 +6661,6 @@ (define-public cwltool python-humanfriendly python-mock python-pytest - python-pytest-cov python-pytest-mock python-pytest-runner python-wheel)) @@ -11559,7 +11555,6 @@ (define-public python-screed (native-inputs (list python-importlib-resources python-pytest - python-pytest-cov python-setuptools python-setuptools-scm python-setuptools-scm-git-archive @@ -19880,7 +19875,6 @@ (define-public python-pyfaidx python-mock python-numpy python-pytest - python-pytest-cov python-wheel)) (propagated-inputs (list python-setuptools)) (home-page "http://mattshirley.com") @@ -19930,9 +19924,7 @@ (define-public python-cooler python-scipy python-simplejson)) (native-inputs - (list python-hatchling - python-pytest - python-pytest-cov)) + (list python-hatchling python-pytest)) ;; Almost all the projects of the Mirnylab are moved under Open2C umbrella (home-page "https://github.com/open2c/cooler") (synopsis "Sparse binary format for genomic interaction matrices") diff --git a/gnu/packages/build-tools.scm b/gnu/packages/build-tools.scm index 6bf0b2ec67..900ca704e6 100644 --- a/gnu/packages/build-tools.scm +++ b/gnu/packages/build-tools.scm @@ -365,7 +365,6 @@ (define-public meson-python python-cython-3 python-gitpython python-pytest - python-pytest-cov python-pytest-mock)) (home-page "https://github.com/mesonbuild/meson-python") (synopsis "Meson-based build backend for Python") diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm index e6aa4d6de6..57e62f6af0 100644 --- a/gnu/packages/check.scm +++ b/gnu/packages/check.scm @@ -1874,7 +1874,6 @@ (define-public python-pytest-nunit (arguments (list #:tests? #false)) ;no tests included (native-inputs (list python-pytest - python-pytest-cov python-setuptools python-wheel python-xmlschema)) @@ -2945,7 +2944,6 @@ (define-public python-pytest-enabler python-toml)) (native-inputs (list python-pytest python-pytest-checkdocs - python-pytest-cov python-pytest-flake8 python-pytest-mypy python-setuptools @@ -3118,7 +3116,6 @@ (define-public python-pytest-perf (native-inputs (list python-pytest python-pytest-checkdocs - python-pytest-cov python-pytest-enabler python-pytest-flake8 python-pytest-mypy @@ -3672,7 +3669,7 @@ (define-public python-pyhamcrest (base32 "05kdzlhs2kvj82pfca13qszszcj6dyrk4b9pbr46x06sq2s4qyls")))) (native-inputs ;all native inputs are for tests - (list python-pytest-cov python-mock python-pytest python-hypothesis)) + (list python-mock python-pytest python-hypothesis)) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases diff --git a/gnu/packages/cpp.scm b/gnu/packages/cpp.scm index 21aa13b73c..7e35ad09f2 100644 --- a/gnu/packages/cpp.scm +++ b/gnu/packages/cpp.scm @@ -1400,7 +1400,6 @@ (define-public cpplint (getenv "TMP_PYTHONPATH"))))))) (native-inputs (list python-pytest - python-pytest-cov python-pytest-runner python-setuptools python-testfixtures diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index df2045db9d..d124ba186c 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -4551,7 +4551,6 @@ (define-public python-redis (list python-numpy python-pytest python-pytest-asyncio-0.23 - python-pytest-cov python-pytest-timeout python-setuptools python-wheel diff --git a/gnu/packages/dav.scm b/gnu/packages/dav.scm index 546118055f..7688c9a994 100644 --- a/gnu/packages/dav.scm +++ b/gnu/packages/dav.scm @@ -58,7 +58,6 @@ (define-public radicale (build-system pyproject-build-system) (native-inputs (list python-pytest - python-pytest-cov python-pytest-flake8 python-pytest-isort python-setuptools @@ -151,7 +150,6 @@ (define-public vdirsyncer python-trustme python-pytest python-pytest-asyncio - python-pytest-cov python-pytest-httpserver radicale)) (inputs diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm index c1cf3b1337..287c6fceee 100644 --- a/gnu/packages/django.scm +++ b/gnu/packages/django.scm @@ -269,7 +269,6 @@ (define-public python-django-extensions (list python-mock python-factory-boy python-pytest - python-pytest-cov python-pytest-django python-shortuuid)) (home-page @@ -1034,7 +1033,6 @@ (define-public python-django-redis python-mock python-msgpack python-pytest - python-pytest-cov python-pytest-django python-pytest-mock python-setuptools @@ -1723,7 +1721,6 @@ (define-public python-django-cleanup python-easy-thumbnails python-pillow python-pytest - python-pytest-cov python-pytest-django python-pytest-xdist)) (propagated-inputs diff --git a/gnu/packages/embedded.scm b/gnu/packages/embedded.scm index 930857d0aa..654dad0015 100644 --- a/gnu/packages/embedded.scm +++ b/gnu/packages/embedded.scm @@ -1960,7 +1960,6 @@ (define-public mbed-tools (invoke "pytest" "-vv"))))))) (native-inputs (list python-pytest - python-pytest-cov python-factory-boy python-requests-mock python-semver)) diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index fe550d8471..66c75e7930 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -2967,7 +2967,6 @@ (define-public python-scikit-rf (native-inputs (list python-nbval python-networkx python-pytest - python-pytest-cov python-pytest-mock python-pyvisa)) (home-page "https://scikit-rf.org/") diff --git a/gnu/packages/fediverse.scm b/gnu/packages/fediverse.scm index c660483b56..3375114cf9 100644 --- a/gnu/packages/fediverse.scm +++ b/gnu/packages/fediverse.scm @@ -188,7 +188,6 @@ (define-public python-mastodon-py python-cryptography python-http-ece python-pytest - python-pytest-cov python-pytest-mock python-pytest-runner python-pytest-vcr diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm index 30ed44aea9..eb676592b3 100644 --- a/gnu/packages/finance.scm +++ b/gnu/packages/finance.scm @@ -2070,7 +2070,6 @@ (define-public fava (list python-babel python-mypy python-pytest - python-pytest-cov python-setuptools python-types-setuptools python-types-simplejson diff --git a/gnu/packages/fontutils.scm b/gnu/packages/fontutils.scm index 4f4793b144..ce7603809b 100644 --- a/gnu/packages/fontutils.scm +++ b/gnu/packages/fontutils.scm @@ -861,7 +861,6 @@ (define-public psautohint (native-inputs (list psautohint-font-data python-pytest - python-pytest-cov python-pytest-xdist python-setuptools-scm python-setuptools diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm index cf8c140040..9fe2db9537 100644 --- a/gnu/packages/geo.scm +++ b/gnu/packages/geo.scm @@ -898,7 +898,6 @@ (define-public python-pyogrio (inputs (list gdal)) (native-inputs (list python-cython-3 python-pytest - python-pytest-cov python-setuptools python-tomli python-versioneer @@ -1003,7 +1002,7 @@ (define-public python-fiona (list gdal ; for gdal-config python-boto3 python-cython - python-pytest python-pytest-cov python-pytz)) + python-pytest python-pytz)) (home-page "https://github.com/Toblerity/Fiona") (synopsis "Fiona reads and writes spatial data files") @@ -1076,7 +1075,6 @@ (define-public python-geopandas python-shapely)) (native-inputs (list python-pytest - python-pytest-cov python-pytest-xdist python-setuptools python-wheel)) diff --git a/gnu/packages/gettext.scm b/gnu/packages/gettext.scm index 25f4efe1fc..0791ff7598 100644 --- a/gnu/packages/gettext.scm +++ b/gnu/packages/gettext.scm @@ -229,7 +229,6 @@ (define-public mdpo python-flake8-implicit-str-concat python-flake8-print python-pytest - python-pytest-cov python-sphinx python-sphinx-argparse python-sphinx-rtd-theme diff --git a/gnu/packages/gpodder.scm b/gnu/packages/gpodder.scm index 57e14ee93f..b9a06fde8e 100644 --- a/gnu/packages/gpodder.scm +++ b/gnu/packages/gpodder.scm @@ -67,7 +67,6 @@ (define-public gpodder (list intltool python-minimock python-pytest - python-pytest-cov python-pytest-httpserver which)) (inputs diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm index 33ddbeba42..3545867fea 100644 --- a/gnu/packages/graphviz.scm +++ b/gnu/packages/graphviz.scm @@ -166,7 +166,6 @@ (define-public python-graphviz graphviz python-mock python-pytest - python-pytest-cov python-pytest-mock python-setuptools python-wheel)) @@ -225,7 +224,6 @@ (define-public python-uqbar (native-inputs (list graphviz python-pytest - python-pytest-cov python-setuptools python-wheel)) (propagated-inputs diff --git a/gnu/packages/jupyter.scm b/gnu/packages/jupyter.scm index 70c13115de..8ce856f128 100644 --- a/gnu/packages/jupyter.scm +++ b/gnu/packages/jupyter.scm @@ -84,7 +84,6 @@ (define-public python-nbclassic (native-inputs (list python-nbval python-jupyter-packaging python-pytest - python-pytest-cov python-pytest-jupyter python-pytest-tornasync python-requests @@ -435,7 +434,6 @@ (define-public python-jupyterlab-server python-openapi-spec-validator python-pytest python-pytest-console-scripts - python-pytest-cov python-pytest-jupyter python-pytest-timeout python-requests-mock @@ -518,8 +516,7 @@ (define-public python-jupyter-packaging (list python-deprecation python-packaging python-setuptools python-tomlkit python-wheel)) (native-inputs - (list python-pypa-build python-pytest - python-pytest-cov python-pytest-mock)) + (list python-pypa-build python-pytest python-pytest-mock)) (home-page "https://jupyter.org") (synopsis "Jupyter packaging utilities") (description "This package provides tools to help build and install @@ -544,7 +541,6 @@ (define-public python-hatch-jupyter-builder (list #:test-flags '(list "-k" "not test_hatch_build"))) (propagated-inputs (list python-hatchling)) (native-inputs (list python-pytest - python-pytest-cov python-pytest-mock python-tomli)) (home-page "https://github.com/jupyterlab/hatch-jupyter-builder") @@ -686,7 +682,6 @@ (define-public python-jupyterlite-core (native-inputs (list python-ansi2html python-hatchling python-pytest-console-scripts - python-pytest-cov python-pytest-xdist python-tornado-6)) (home-page "https://github.com/jupyterlite/jupyterlite") @@ -792,7 +787,6 @@ (define-public python-nbclient python-flaky python-pytest python-pytest-asyncio - python-pytest-cov python-testpath python-xmltodict)) (home-page "https://jupyter.org") @@ -1116,8 +1110,7 @@ (define-public python-ipydatawidgets (native-inputs (list python-jupyter-packaging python-nbval - python-pytest - python-pytest-cov)) + python-pytest)) (home-page "https://github.com/vidartf/ipydatawidgets") (synopsis "Widgets to help facilitate reuse of large datasets across widgets") (description @@ -1164,7 +1157,6 @@ (define-public python-papermill python-moto python-notebook python-pytest - python-pytest-cov python-pytest-env python-pytest-mock python-recommonmark diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index a7c9e2dc99..360325c768 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -1068,8 +1068,7 @@ (define-public python-persim python-numpy python-scikit-learn python-scipy)) - (native-inputs (list python-pytest python-pytest-cov python-setuptools - python-wheel)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://persim.scikit-tda.org") (synopsis "Tools for analyzing persistence diagrams in Python") (description @@ -1144,7 +1143,6 @@ (define-public python-pymanopt python-flake8-bugbear python-matplotlib python-pytest - python-pytest-cov python-setuptools python-setuptools-scm python-wheel)) @@ -2025,7 +2023,7 @@ (define-public python-scikit-learn-extra python-scikit-learn python-scipy python-packaging)) - (native-inputs (list python-pytest python-pytest-cov python-cython + (native-inputs (list python-pytest python-cython python-setuptools python-wheel)) (home-page "https://github.com/scikit-learn-contrib/scikit-learn-extra") (synopsis "Set of tools for scikit-learn") @@ -2149,7 +2147,6 @@ (define-public python-imbalanced-learn (native-inputs (list python-keras python-pandas python-pytest - python-pytest-cov python-setuptools python-wheel tensorflow)) @@ -3891,8 +3888,7 @@ (define-public python-keras-applications (propagated-inputs (list python-h5py python-numpy)) (native-inputs - (list python-pytest python-pytest-cov - python-pytest-xdist)) + (list python-pytest python-pytest-xdist)) (home-page "https://github.com/keras-team/keras-applications") (synopsis "Reference implementations of popular deep learning models") (description @@ -3918,7 +3914,6 @@ (define-public python-keras-preprocessing (list python-pandas python-pillow python-pytest - python-pytest-cov python-pytest-xdist tensorflow)) (home-page "https://github.com/keras-team/keras-preprocessing/") @@ -4060,7 +4055,6 @@ (define-public python-keras python-markdown python-pandas python-pytest - python-pytest-cov python-pytest-timeout python-pytest-xdist python-pyux @@ -4157,7 +4151,7 @@ (define-public python-tensorly ;; nor is examples/plot_quantum.py " and not test_file_is_generated")))) (propagated-inputs (list python-jsmin python-numpy python-scipy)) - (native-inputs (list python-pytest python-pytest-cov python-sphinx + (native-inputs (list python-pytest python-sphinx python-setuptools python-wheel)) (home-page "https://github.com/tensorly/tensorly") (synopsis "Tensor learning in Python") @@ -5222,8 +5216,7 @@ (define-public python-pytorch-geometric python-tqdm)) (native-inputs (list python-flit-core - python-pytest - python-pytest-cov)) + python-pytest)) (home-page "https://pyg.org") (synopsis "Graph Neural Network library for PyTorch") (description @@ -5318,7 +5311,6 @@ (define-public python-captum python-ipywidgets python-parameterized python-pytest - python-pytest-cov python-scikit-learn python-setuptools)) (home-page "https://captum.ai") @@ -5506,7 +5498,6 @@ (define-public python-torchmetrics python-pandas python-psutil python-pytest - python-pytest-cov python-pytest-doctestplus python-pytest-rerunfailures python-pytest-timeout @@ -5956,7 +5947,6 @@ (define-public python-botorch python-pytorch python-scipy)) (native-inputs (list python-pytest - python-pytest-cov python-setuptools-scm)) (home-page "https://botorch.org") (synopsis "Bayesian Optimization in PyTorch") diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 22604f5841..f89f5e8faa 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -4237,7 +4237,6 @@ (define-public python-libensemble python-mock python-mpi4py python-pytest - python-pytest-cov python-pytest-timeout python-setuptools python-wheel)) diff --git a/gnu/packages/matrix.scm b/gnu/packages/matrix.scm index be3edae0dc..970093d345 100644 --- a/gnu/packages/matrix.scm +++ b/gnu/packages/matrix.scm @@ -200,7 +200,6 @@ (define-public python-matrix-nio python-pytest-aiohttp python-pytest-asyncio python-pytest-benchmark - python-pytest-cov python-pytest-flake8 python-setuptools python-wheel)) diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm index fcb05dbda6..644a9a2134 100644 --- a/gnu/packages/messaging.scm +++ b/gnu/packages/messaging.scm @@ -3240,7 +3240,6 @@ (define-public zulip-term (modules '((guix build utils))) (snippet '(substitute* "setup.py" (("\\=\\=1\\.7") ">=1.7") ; pytest-mock - (("\\=\\=2\\.5") ">=2.5") ; pytest-cov (("4\\.5\\.2") "4.4.2"))))) ; lxml (build-system pyproject-build-system) (arguments @@ -3253,8 +3252,7 @@ (define-public zulip-term python-urwid-readline python-zulip)) (native-inputs - (list python-distro python-pytest python-pytest-cov - python-pytest-mock)) + (list python-distro python-pytest python-pytest-mock)) (home-page "https://github.com/zulip/zulip-terminal") (synopsis "Zulip's official terminal client") (description "This package contains Zulip's official terminal client.") diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index ae2afb8441..7d050ddee7 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -4309,7 +4309,6 @@ (define-public beets python-mock python-py7zr python-pytest - python-pytest-cov python-setuptools python-responses python-wheel)) @@ -5349,7 +5348,6 @@ (define-public stargate python-gcovr python-packaging python-pytest - python-pytest-cov python-pytest-runner)) (inputs (list alsa-lib diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm index 96561fff3a..7947dfebb6 100644 --- a/gnu/packages/networking.scm +++ b/gnu/packages/networking.scm @@ -1941,7 +1941,7 @@ (define-public gandi.cli #t)))))) (native-inputs (list python-docutils ; for rst2man.py - python-pytest python-pytest-cov)) + python-pytest)) (propagated-inputs (list openssh)) ; used by gandi/cli/modules/iass.py (inputs diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm index 7605e4073d..4f00eca017 100644 --- a/gnu/packages/package-management.scm +++ b/gnu/packages/package-management.scm @@ -1152,7 +1152,6 @@ (define-public python-conda-package-handling (list python-cython python-mock python-pytest - python-pytest-cov python-pytest-mock python-setuptools python-wheel)) @@ -1296,7 +1295,6 @@ (define-public conda zstd)) (native-inputs (list python-flaky - python-pytest-cov python-pytest-timeout python-pytest-xprocess python-wheel)) diff --git a/gnu/packages/patchutils.scm b/gnu/packages/patchutils.scm index 3cd3507b07..d0d48f6922 100644 --- a/gnu/packages/patchutils.scm +++ b/gnu/packages/patchutils.scm @@ -595,7 +595,7 @@ (define-public pwclient "/share/man/man1")) #t))))) (native-inputs - (list python-pbr python-pytest python-pytest-cov python-mock)) + (list python-pbr python-pytest python-mock)) (home-page "https://github.com/getpatchwork/pwclient") (synopsis "Command-line client for the Patchwork patch tracking tool") diff --git a/gnu/packages/protobuf.scm b/gnu/packages/protobuf.scm index 487c03fa94..c431aedc7d 100644 --- a/gnu/packages/protobuf.scm +++ b/gnu/packages/protobuf.scm @@ -502,7 +502,7 @@ (define-public python-pure-protobuf (base32 "15dp5pvazd0jx4wzzh79080ah7hkpd3axh40al9vhzs2hf3v90hx")))) (build-system python-build-system) (native-inputs - (list python-pytest python-pytest-cov)) + (list python-pytest)) (arguments `(#:phases (modify-phases %standard-phases diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index 35e043b3c8..c5a94582b9 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -199,7 +199,7 @@ (define-public python-atpublic (build-system pyproject-build-system) (arguments (list #:build-backend "pdm.backend")) (native-inputs - (list python-pytest python-pdm-backend python-sybil python-pytest-cov)) + (list python-pytest python-pdm-backend python-sybil)) (home-page "https://public.readthedocs.io/") (synopsis "@code{@@public} decorator for populating @code{__all__}") (description @@ -776,7 +776,7 @@ (define-public python-testfixtures (arguments `(#:tests? #f)) ; PyTest-Django fails to build in master (native-inputs - (list python-pytest python-pytest-cov + (list python-pytest ;;("python-pytest-django" ,python-pytest-django) python-wheel)) (synopsis "Tests components for Python") @@ -1183,7 +1183,6 @@ (define-public python-pytest-filter-subpackage (build-system pyproject-build-system) (native-inputs (list python-pytest - python-pytest-cov python-pytest-doctestplus python-setuptools-scm python-setuptools @@ -2913,7 +2912,7 @@ (define-public python-pandas-vet "__version__ = version = '~a' __version_tuple__ = version_tuple = (~a)~%" version version-tuple))))))))) (propagated-inputs (list python-attrs python-flake8)) - (native-inputs (list python-hatchling python-pytest python-pytest-cov)) + (native-inputs (list python-hatchling python-pytest)) (home-page "https://github.com/deppen8/pandas-vet") (synopsis "Opionated @code{flake8} plugin for @code{pandas} code") (description @@ -3116,7 +3115,6 @@ (define-public python-sybil (native-inputs (list python-mypy python-myst-parser python-pytest - python-pytest-cov python-pyyaml python-seedir python-setuptools @@ -3265,7 +3263,6 @@ (define-public python-vcrpy python-httplib2 python-httpx python-pytest - python-pytest-cov python-pytest-aiohttp python-pytest-asyncio python-pytest-httpbin @@ -3323,7 +3320,6 @@ (define-public python-vulture "not test_whitelists_with_python"))))))) (native-inputs (list python-pytest - python-pytest-cov python-setuptools python-wheel)) (propagated-inputs (list python-toml)) diff --git a/gnu/packages/python-compression.scm b/gnu/packages/python-compression.scm index b2e62e1d49..6ce0f6f14f 100644 --- a/gnu/packages/python-compression.scm +++ b/gnu/packages/python-compression.scm @@ -166,7 +166,6 @@ (define-public python-multivolumefile python-hypothesis python-pyannotate python-pytest - python-pytest-cov python-setuptools python-wheel)) (home-page "https://github.com/miurahr/multivolume") @@ -306,7 +305,6 @@ (define-public python-pybcj (native-inputs (list python-hypothesis python-pytest - python-pytest-cov python-setuptools-scm python-setuptools python-wheel)) @@ -337,7 +335,7 @@ (define-public python-bcj-cffi (propagated-inputs (list python-cffi python-toml python-setuptools-scm)) (native-inputs - (list python-setuptools python-pytest python-pytest-cov)) + (list python-setuptools python-pytest)) (home-page "https://github.com/miurahr/bcj-cffi") (synopsis "Branch / Call /Jump CFFI library in Python") (description "This package provides an implementation of the Branch / Call / @@ -465,7 +463,6 @@ (define-public python-pyppmd (list python-hypothesis python-pytest python-pytest-benchmark - python-pytest-cov python-pytest-timeout python-setuptools-scm python-setuptools @@ -495,8 +492,7 @@ (define-public python-ppmd-cffi (native-inputs (list python-hypothesis python-setuptools-scm - python-pytest - python-pytest-cov)) + python-pytest)) (home-page "https://github.com/miurahr/ppmd") (synopsis "Prediction by Partial Matching compression library") (description "PPMd is a compression algorithm library using the Prediction @@ -535,7 +531,6 @@ (define-public python-py7zr python-pyannotate python-pytest python-pytest-benchmark - python-pytest-cov python-pytest-remotedata python-pytest-timeout python-setuptools-scm @@ -792,7 +787,7 @@ (define-public python-zipstream-ng (base32 "1z4zdqqs2rg3z36khgj96bpggv34av337isfv7yxg32prawj687r")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest python-pytest-cov python-setuptools python-wheel)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/pR0Ps/zipstream-ng") (synopsis "Streamable zip file generator") (description diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm index dbac0f4772..ec4e074a6b 100644 --- a/gnu/packages/python-crypto.scm +++ b/gnu/packages/python-crypto.scm @@ -445,7 +445,7 @@ (define-public python-certauth (propagated-inputs (list python-pyopenssl python-tldextract)) (native-inputs - (list nss-certs-for-test python-pytest-cov python-setuptools python-wheel)) + (list nss-certs-for-test python-setuptools python-wheel)) (home-page "https://github.com/ikreymer/certauth") (synopsis "Certificate authority creation tool") (description "This package provides a small library, built on top of @@ -589,7 +589,6 @@ (define-public python-cryptography python-pretend python-pytest python-pytest-benchmark - python-pytest-cov python-pytest-randomly python-pytest-xdist python-setuptools @@ -1471,7 +1470,6 @@ (define-public python-trustme (list python-more-itertools python-pyopenssl python-pytest - python-pytest-cov python-service-identity python-setuptools python-wheel diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index ad60378944..55d522b21c 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -463,7 +463,6 @@ (define-public python-scipy python-pooch python-pydevtool python-pytest - python-pytest-cov python-pytest-timeout python-pytest-xdist)) (home-page "https://scipy.org/") @@ -736,7 +735,6 @@ (define-public python-scikit-misc python-meson-python python-numpy python-pytest - python-pytest-cov python-setuptools python-wheel)) (home-page "https://has2k1.github.io/scikit-misc/stable") @@ -1057,7 +1055,6 @@ (define-public python-mpl-scatter-density #:test-flags #~(list "-k" "not test_default_dpi"))) (native-inputs (list python-pytest - python-pytest-cov python-pytest-mpl python-setuptools python-setuptools-scm @@ -1586,7 +1583,6 @@ (define-public python-pandarallel (list python-mkdocs-material python-numpy python-pytest - python-pytest-cov python-pytest-xdist python-setuptools python-wheel)) @@ -1864,8 +1860,7 @@ (define-public python-pyts python-scikit-learn python-scipy)) (native-inputs - (list python-pytest python-pytest-cov python-setuptools - python-wheel)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/johannfaouzi/pyts") (synopsis "Python package for time series classification") (description @@ -2491,8 +2486,9 @@ (define-public python-upsetplot (propagated-inputs (list python-matplotlib python-pandas)) (native-inputs - (list python-pytest-runner python-pytest-cov - python-setuptools python-wheel)) + (list python-pytest-runner + python-setuptools + python-wheel)) (home-page "https://upsetplot.readthedocs.io") (synopsis "Draw UpSet plots with Pandas and Matplotlib") (description @@ -2641,7 +2637,7 @@ (define-public python-pingouin (("kwargs\\[\"penalty\"\\] = \"none\"") "kwargs[\"penalty\"] = None"))))))) (native-inputs - (list python-pytest python-pytest-cov)) + (list python-pytest)) (propagated-inputs (list python-matplotlib python-mpmath @@ -3059,7 +3055,6 @@ (define-public python-modin python-pyarrow python-pytest python-pytest-benchmark - python-pytest-cov python-pytest-xdist python-scipy python-sqlalchemy @@ -3202,7 +3197,6 @@ (define-public python-plotnine python-mock python-pandas python-pytest - python-pytest-cov python-setuptools python-setuptools-scm python-wheel @@ -3915,7 +3909,7 @@ (define-public python-opt-einsum (build-system pyproject-build-system) (propagated-inputs (list python-numpy)) (native-inputs - (list python-pytest python-pytest-cov python-setuptools python-wheel)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/dgasmith/opt_einsum") (synopsis "Optimizing numpys einsum function") (description @@ -3998,7 +3992,7 @@ (define-public python-salib python-numpy python-pandas python-scipy)) - (native-inputs (list python-hatchling python-pytest python-pytest-cov)) + (native-inputs (list python-hatchling python-pytest)) (home-page "https://salib.readthedocs.io/en/latest/") (synopsis "Tools for global sensitivity analysis") (description "SALib provides tools for global sensitivity analysis. It @@ -4057,7 +4051,6 @@ (define-public python-pynetdicom (native-inputs (list python-codespell python-poetry-core python-pytest - python-pytest-cov python-pytest-xdist python-sphinx python-sphinx-rtd-theme)) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 1c419c6722..f0ccbf3b92 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -263,8 +263,7 @@ (define-public python-devpi-process python-hatchling python-hatch-vcs python-httpx - python-pytest - python-pytest-cov)) + python-pytest)) (home-page "https://github.com/devpi/devpi") (synopsis "API to create and use a devpi server process") (description @@ -568,7 +567,6 @@ (define-public python-huggingface-hub python-pydantic-2 python-pytest python-pytest-asyncio - python-pytest-cov python-pytest-env python-pytest-rerunfailures python-pytest-vcr @@ -700,7 +698,6 @@ (define-public python-portend ;; TODO: Add python-pytest-ruff to native-inputs once it has been packaged. (native-inputs (list python-pytest python-pytest-checkdocs - python-pytest-cov python-pytest-enabler python-pytest-mypy python-setuptools @@ -875,8 +872,7 @@ (define-public python-aiohappyeyeballs (native-inputs (list python-poetry-core python-pytest - python-pytest-asyncio - python-pytest-cov)) + python-pytest-asyncio)) (home-page "https://github.com/aio-libs/aiohappyeyeballs") (synopsis "Happy Eyeballs for asyncio") (description "This library exists to allow connecting with Happy @@ -928,7 +924,6 @@ (define-public python-aiosignal (native-inputs (list python-pytest python-pytest-asyncio - python-pytest-cov python-setuptools python-wheel)) (home-page "https://github.com/aio-libs/aiosignal") @@ -1186,11 +1181,10 @@ (define-public python-aiostream (sha256 (base32 "0l2ijb7yk0820wiyf6zrzx8fhzf8925an7r06mcaw3in1mr6rssq")))) - (build-system python-build-system) + (build-system pyproject-build-system) (native-inputs (list python-pytest python-pytest-asyncio - python-pytest-cov python-pytest-runner python-setuptools python-wheel)) @@ -1601,7 +1595,6 @@ (define-public python-ovh (arguments (list #:tests? #f)) ; XXX: tests require networking (propagated-inputs (list python-requests)) (native-inputs (list python-pytest - python-pytest-cov python-setuptools python-sphinx python-wheel)) @@ -1624,7 +1617,6 @@ (define-public python-cbor2 (build-system pyproject-build-system) (native-inputs (list python-pytest - python-pytest-cov python-setuptools python-setuptools-scm python-wheel)) @@ -1949,7 +1941,6 @@ (define-public python-httplib2 python-future python-mock python-pytest - python-pytest-cov python-pytest-forked python-pytest-randomly python-pytest-timeout @@ -1979,8 +1970,7 @@ (define-public python-cheroot (arguments (list #:test-flags - #~(list "--cov=cheroot" - ;; Tests are flaky in parallel invocation. + #~(list ;; Tests are flaky in parallel invocation. ;; "--numprocesses=auto" "--doctest-modules" "--showlocals" @@ -2006,7 +1996,6 @@ (define-public python-cheroot python-portend python-pyopenssl python-pypytools - python-pytest-cov python-pytest-mock python-requests python-requests-toolbelt @@ -2082,7 +2071,6 @@ (define-public parfive python-tqdm)) (native-inputs (list python-pytest python-pytest-asyncio - python-pytest-cov python-pytest-localserver python-pytest-socket python-setuptools @@ -2151,7 +2139,7 @@ (define-public python-jose "and not test_private_key_load_cycle")))) (native-inputs (list ;; All native inputs are for tests. - python-pyasn1 python-pytest python-pytest-cov + python-pyasn1 python-pytest python-pytest-runner python-setuptools python-wheel)) @@ -2250,7 +2238,7 @@ (define-public python-pyscss (base32 "1vinddg8sbh3v9n1r1wmvjx6ydk8xp7scbvhb3csl4y9xz7vhk6g")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest python-pytest-cov python-setuptools python-wheel)) + (list python-pytest python-setuptools python-wheel)) (inputs (list pcre)) (home-page "https://github.com/Kronuz/pyScss") @@ -2292,7 +2280,6 @@ (define-public python-jsonpickle python-pymongo python-pytest python-pytest-benchmark - python-pytest-cov python-pytest-enabler python-setuptools python-setuptools-scm @@ -2318,12 +2305,11 @@ (define-public python-mechanicalsoup (uri (pypi-uri "MechanicalSoup" version)) (sha256 (base32 "01sddjxy3rznh63hnl5lbv1hhk6xyiviwmkiw4x7v4ap35fb3lrp")))) - (build-system python-build-system) + (build-system pyproject-build-system) (propagated-inputs (list python-beautifulsoup4 python-lxml python-requests python-six)) (native-inputs - (list python-pytest-cov - python-pytest-flake8 + (list python-pytest-flake8 python-pytest-httpbin python-pytest-mock python-pytest-runner @@ -2545,7 +2531,6 @@ (define-public python-flask-babel (native-inputs (list python-poetry-core python-pytest - python-pytest-cov python-pytest-mock)) (propagated-inputs (list python-babel @@ -2851,7 +2836,6 @@ (define-public python-url-normalize (list python-poetry-core python-pytest python-pytest-flakes - python-pytest-cov python-pytest-socket)) (home-page "https://github.com/niksite/url-normalize") (synopsis "URL normalization for Python") @@ -3380,7 +3364,8 @@ (define-public python-priority ;; This test exceeded the Hypothesis deadline. "not test_period_of_repetition")))))) (native-inputs - (list python-hypothesis python-pytest python-pytest-cov + (list python-hypothesis + python-pytest python-pytest-xdist)) (home-page "https://python-hyper.org/projects/priority/en/latest/") (synopsis "Pure-Python implementation of the HTTP/2 priority tree") @@ -3440,7 +3425,6 @@ (define-public hypercorn python-poetry-core python-pytest python-pytest-asyncio - python-pytest-cov python-pytest-trio python-trio)) (home-page "https://gitlab.com/pgjones/hypercorn/") @@ -4451,8 +4435,9 @@ (define-public python-apiron (propagated-inputs (list python-requests)) (native-inputs - (list python-pytest python-pytest-cov - python-setuptools python-wheel)) + (list python-pytest + python-setuptools + python-wheel)) (home-page "https://github.com/ithaka/apiron") (synopsis "Python wrapper for interacting with RESTful APIs") (description @@ -4717,7 +4702,6 @@ (define-public python-aioftp (list python-async-timeout python-pytest python-pytest-asyncio - python-pytest-cov python-setuptools python-trustme python-wheel)) @@ -4824,7 +4808,7 @@ (define-public python-oauthlib (lambda _ (invoke "pytest" "-vv")))))) (native-inputs - (list python-pytest python-pytest-cov python-mock)) + (list python-pytest python-mock)) (propagated-inputs (list python-cryptography python-pyjwt python-blinker)) (home-page "https://github.com/oauthlib/oauthlib") @@ -6119,7 +6103,6 @@ (define-public python-elasticsearch python-mock python-pytest python-pytest-asyncio - python-pytest-cov python-pyyaml python-requests python-setuptools @@ -7098,8 +7081,7 @@ (define-public python-tinycss2 (build-system pyproject-build-system) (native-inputs (list python-flit - python-pytest - python-pytest-cov)) + python-pytest)) (propagated-inputs (list python-webencodings)) (home-page "https://tinycss2.readthedocs.io/") @@ -7138,7 +7120,7 @@ (define-public python-cssselect2 (propagated-inputs (list python-tinycss2)) (native-inputs - (list python-flit python-pytest-cov python-pytest-runner)) + (list python-flit python-pytest-runner)) (home-page "https://cssselect2.readthedocs.io/") (synopsis "CSS selectors for Python ElementTree") (description "@code{cssselect2} is a straightforward implementation of @@ -7294,7 +7276,6 @@ (define-public gunicorn python-aiohttp python-gevent python-pytest - python-pytest-cov python-sphinx texinfo)) (propagated-inputs (list python-packaging python-setuptools python-wheel)) @@ -7655,7 +7636,6 @@ (define-public python-httpcore python-hatchling python-pytest python-pytest-asyncio - python-pytest-cov python-pytest-httpbin python-pytest-trio python-uvicorn @@ -7831,7 +7811,7 @@ (define-public python-wsgiprox (propagated-inputs (list python-certauth python-gevent python-websocket-client)) (native-inputs - (list python-mock python-pytest-cov python-waitress)) + (list python-mock python-waitress)) (home-page "https://github.com/webrecorder/wsgiprox") (synopsis "HTTP/S proxy with WebSockets over WSGI") (description "@code{wsgiprox} is a Python WSGI (Web Server Gateway @@ -7873,7 +7853,6 @@ (define-public python-warcio (native-inputs ;; These inputs are required for the test suite. (list python-httpbin - python-pytest-cov python-requests python-setuptools python-wheel @@ -7991,11 +7970,9 @@ (define-public python-venusian (uri (pypi-uri "venusian" version)) (sha256 (base32 "0f7f67dkgxxcjfhpdd5frb9pszkf04lyzzpn5069q0xi89r2p17n")))) - (build-system python-build-system) + (build-system pyproject-build-system) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-runner" ,python-pytest-runner) - ("python-pytest-cov" ,python-pytest-cov))) + (list python-pytest python-pytest-runner)) (arguments '(#:test-target "pytest")) (home-page "https://docs.pylonsproject.org/projects/venusian") (synopsis "Library for deferring decorator actions") @@ -8106,7 +8083,6 @@ (define-public python-hupper (native-inputs (list python-mock python-pytest - python-pytest-cov python-pytest-runner python-setuptools python-watchdog @@ -8640,7 +8616,6 @@ (define-public python-cloud-init (native-inputs (list procps ;for ps when running tests python-pytest - python-pytest-cov python-pytest-mock python-passlib python-setuptools @@ -9035,7 +9010,6 @@ (define-public python-simple-websocket (list #:test-flags '(list "--ignore=tests/test_client.py"))) (propagated-inputs (list python-wsproto)) (native-inputs (list python-pytest - python-pytest-cov python-setuptools python-wheel)) (home-page "https://github.com/miguelgrinberg/simple-websocket") @@ -9061,8 +9035,7 @@ (define-public python-siosocks (lambda* (#:key tests? #:allow-other-keys) (when tests? (invoke "pytest" "-vvv"))))))) - (native-inputs (list python-pytest python-pytest-asyncio python-pytest-cov - python-pytest-trio)) + (native-inputs (list python-pytest python-pytest-asyncio python-pytest-trio)) (propagated-inputs (list python-trio)) (home-page "https://github.com/pohmelie/siosocks") (synopsis "SOCKSv4 & SOCKSv5 TCP proxy protocol implementation in Python") @@ -10132,7 +10105,6 @@ (define-public python-zeep python-pretend python-pytest python-pytest-asyncio - python-pytest-cov python-pytest-httpx python-requests-mock python-setuptools diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index f0a65a968d..9a6c763eb0 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -346,7 +346,6 @@ (define-public python-apprise (native-inputs (list python-babel python-pytest - python-pytest-cov python-pytest-mock python-pytest-xdist python-setuptools @@ -396,9 +395,7 @@ (define-public python-archspec python-scikit-learn python-tables python-typing-extensions)) - (native-inputs (list python-poetry-core - python-pytest - python-pytest-cov)) + (native-inputs (list python-poetry-core python-pytest)) (home-page "https://github.com/archspec/archspec") (synopsis "Library to query system architecture") (description @@ -793,7 +790,7 @@ (define-public python-janus (base32 "04hnrdcf03g1s0x3sr72sh9gnszz6kyfsl9dg8a4n0zvvhn6z5yz")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest python-pytest-cov python-pytest-asyncio + (list python-pytest python-pytest-asyncio python-setuptools python-wheel)) (propagated-inputs (list python-typing-extensions)) (home-page "https://github.com/aio-libs/janus/") @@ -973,7 +970,9 @@ (define-public python-logbook (setenv "CYBUILD" "True") (invoke "pytest" "--cov=logbook" "-r" "s" "tests"))))))) (native-inputs - (list python-cython python-mock python-pytest python-pytest-cov + (list python-cython + python-mock + python-pytest python-brotli)) (home-page "https://github.com/getlogbook/logbook") (synopsis "Logbook is a logging replacement for Python") @@ -1387,7 +1386,7 @@ (define-public python-affine "1shyvajayyzbkp9dihb4mz835jnkp0kqqbyjfqci6v43da6q2kd2")))) (build-system pyproject-build-system) (propagated-inputs (list python-pydocstyle - python-pytest python-pytest-cov)) + python-pytest)) (native-inputs (list python-flit-core)) (home-page "https://github.com/rasterio/affine") (synopsis "Matrices describing affine transformation of the plane") @@ -1504,7 +1503,6 @@ (define-public python-colorcet (native-inputs (list python-nbval python-packaging python-pytest - python-pytest-cov python-pytest-mpl python-setuptools python-wheel)) @@ -1630,7 +1628,6 @@ (define-public python-contourpy pkg-config pybind11 python-pytest - python-pytest-cov python-wurlitzer)) (home-page "https://contourpy.readthedocs.io/") (synopsis @@ -1712,7 +1709,6 @@ (define-public python-mdit-py-plugins (native-inputs (list python-flit-core python-pytest - python-pytest-cov python-pytest-regressions)) (home-page "https://github.com/executablebooks/mdit-py-plugins") (synopsis "Collection of plugins for markdown-it-py") @@ -2059,9 +2055,13 @@ (define-public python-pint ;; present in registry" " and not test_load_definitions_stage_2")))) (native-inputs - (list python-pytest python-pytest-benchmark python-pytest-cov - python-pytest-mpl python-pytest-subtests - python-setuptools python-setuptools-scm python-wheel)) + (list python-pytest + python-pytest-benchmark + python-pytest-mpl + python-pytest-subtests + python-setuptools + python-setuptools-scm + python-wheel)) (propagated-inputs (list python-typing-extensions python-uncertainties)) @@ -2896,7 +2896,6 @@ (define-public python-echo python-pyqt-6)) (native-inputs (list python-pytest - python-pytest-cov python-setuptools-scm xorg-server-for-tests)) (home-page "https://github.com/glue-viz/echo") @@ -3125,7 +3124,6 @@ (define-public python-rasterio python-hypothesis python-packaging python-pytest - python-pytest-cov python-shapely python-wheel)) (home-page "https://github.com/rasterio/rasterio") @@ -3151,8 +3149,7 @@ (define-public python-rich-tables (native-inputs (list python-freezegun python-poetry-core - python-pytest - python-pytest-cov)) + python-pytest)) (propagated-inputs (list python-funcy python-multimethod @@ -3303,7 +3300,6 @@ (define-public python-babel (native-inputs (list python-freezegun python-pytest - python-pytest-cov python-setuptools python-wheel tzdata-for-tests)) @@ -3337,7 +3333,6 @@ (define-public python-bidict python-py python-pytest python-pytest-benchmark - python-pytest-cov python-setuptools-scm python-sortedcollections python-sortedcontainers @@ -4296,7 +4291,6 @@ (define-public python-can python-parameterized python-pyserial python-pytest - python-pytest-cov python-pytest-runner python-pytest-timeout python-wheel)) @@ -4790,7 +4784,8 @@ (define-public dosage python-requests python-six)) (native-inputs - (list python-pytest-cov python-pytest-xdist python-responses + (list python-pytest-xdist + python-responses python-setuptools-scm)) (home-page "https://github.com/webcomics/dosage") (synopsis "Comic strip downloader and archiver") @@ -5232,7 +5227,7 @@ (define-public python-pymarshal ;; "CovReportWarning: Failed to generate report: No data to report." (list #:tests? #f)) (native-inputs - (list python-pytest python-pytest-cov python-setuptools python-wheel)) + (list python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-bson python-pyyaml)) (home-page "https://gitlab.com/d3v-t00lz/pymarshal") (synopsis "Pythonic implementation of Golang struct (un)marshalling") @@ -5665,7 +5660,6 @@ (define-public python-portalocker "0lawjm736vs86wlnxc3qqh37l11z0yx81xq3dmrw33m86kaq2bh3")))) (build-system pyproject-build-system) (native-inputs (list python-pytest - python-pytest-cov python-pytest-mypy python-pytest-timeout python-redis @@ -5710,7 +5704,7 @@ (define-public python-expandvars (base32 "0i6q4i8dzsax85w1l2hc7saymyh3fw43vkifh5flpkr8ayjxy6kx")))) (build-system pyproject-build-system) (native-inputs - (list python-hatchling python-pytest python-pytest-cov)) + (list python-hatchling python-pytest)) (home-page "https://pypi.org/project/expandvars/") (synopsis "Expand system variables Unix style") (description "This module is inspired by GNU bash's variable expansion @@ -5756,7 +5750,6 @@ (define-public python-extension-helpers (native-inputs (list python-pytest python-pytest-astropy - python-pytest-cov python-setuptools-scm python-tomli python-setuptools @@ -5924,8 +5917,11 @@ (define-public python-mizani (propagated-inputs (list python-matplotlib python-numpy python-pandas python-scipy)) (native-inputs - (list python-setuptools python-setuptools-scm - python-pytest python-pytest-cov python-wheel tzdata)) + (list python-setuptools + python-setuptools-scm + python-pytest + python-wheel + tzdata)) (home-page "https://github.com/has2k1/mizani") (synopsis "Create data visualizations in Python") (description @@ -6315,8 +6311,6 @@ (define-public python-cligj (build-system python-build-system) (propagated-inputs (list python-click)) - (native-inputs - (list python-pytest-cov)) (home-page "https://github.com/mapbox/cligj") (synopsis "Click params for command line interfaces to GeoJSON") (description @@ -6426,7 +6420,6 @@ (define-public python-ddlparse (build-system pyproject-build-system) (native-inputs (list python-pytest - python-pytest-cov python-setuptools python-wheel)) (propagated-inputs (list python-pyparsing)) @@ -7552,7 +7545,7 @@ (define-public autokey (setenv "LANG" "") ;; required for tests/test_configmanager.py (setenv "HOME" "/tmp")))))) - (native-inputs (list python-pytest python-pytest-cov python-pyhamcrest)) + (native-inputs (list python-pytest python-pyhamcrest)) (inputs (list bash-minimal ; for wrap-program gtksourceview-3 @@ -8483,7 +8476,8 @@ (define-public python-robotframework-pythonlibcore (when tests? (invoke "utest/run.py"))))))) (native-inputs - (list python-pytest python-pytest-cov python-pytest-mockito + (list python-pytest + python-pytest-mockito python-robotframework)) (home-page "https://github.com/robotframework/PythonLibCore") (synopsis "Robot Framework Python library tools") @@ -8678,7 +8672,6 @@ (define-public python-lsp-jsonrpc (native-inputs (list python-pyflakes python-pytest - python-pytest-cov python-setuptools python-setuptools-scm python-wheel)) @@ -9776,7 +9769,6 @@ (define-public python-sparse (native-inputs (list python-dask python-pytest - python-pytest-cov python-setuptools python-setuptools-scm-next python-wheel)) @@ -10212,7 +10204,6 @@ (define-public python-numpydoc (native-inputs (list python-matplotlib python-pytest - python-pytest-cov python-setuptools python-wheel)) (home-page "https://pypi.org/project/numpydoc/") @@ -11348,7 +11339,6 @@ (define-public python-pikepdf python-setuptools-scm python-psutil python-pytest - python-pytest-cov python-pytest-timeout python-pytest-xdist python-dateutil @@ -11398,7 +11388,6 @@ (define-public python-pillow python-olefile python-packaging python-pytest - python-pytest-cov python-pytest-timeout python-setuptools python-trove-classifiers @@ -11627,8 +11616,6 @@ (define-public python-property-manager (sha256 (base32 "0m3w4spr8f39xnm65naw29ncal4r453kn7ndqb63rwbsmslnvrwk")))) (build-system python-build-system) - (native-inputs - (list python-pytest-cov)) (propagated-inputs (list python-verboselogs python-humanfriendly @@ -11993,7 +11980,6 @@ (define-public python-imageio (native-inputs (list python-fsspec python-pytest - python-pytest-cov python-setuptools python-wheel)) (home-page "https://imageio.github.io/") @@ -12279,7 +12265,6 @@ (define-public python-manimpango (list pkg-config python-cython python-pytest - python-pytest-cov python-setuptools python-wheel)) (inputs @@ -12317,7 +12302,6 @@ (define-public python-cairocffi python-numpy python-pikepdf python-pytest - python-pytest-cov python-pytest-runner python-sphinx python-sphinx-rtd-theme)) @@ -12807,7 +12791,6 @@ (define-public python-importlib-resources (native-inputs (list python-pytest python-pytest-checkdocs - python-pytest-cov python-pytest-enabler python-pytest-flake8 python-pytest-mypy @@ -12957,7 +12940,6 @@ (define-public python-jaraco-classes (native-inputs (list python-pytest python-pytest-checkdocs - python-pytest-cov python-pytest-flake8 python-pytest-mypy python-setuptools @@ -12990,7 +12972,6 @@ (define-public python-jaraco-collections ;; packaged. (native-inputs (list python-pytest python-pytest-checkdocs - python-pytest-cov python-pytest-enabler python-pytest-mypy python-setuptools @@ -13050,7 +13031,6 @@ (define-public python-jaraco-context (native-inputs (list python-pytest python-pytest-checkdocs - python-pytest-cov python-pytest-flake8 python-pytest-mypy python-setuptools @@ -13084,7 +13064,6 @@ (define-public python-jaraco-functools (list python-jaraco-classes python-pytest python-pytest-checkdocs - python-pytest-cov python-pytest-flake8 python-pytest-mypy python-setuptools @@ -13178,7 +13157,6 @@ (define-public python-jaraco-text ;; packaged. (native-inputs (list python-pytest python-pytest-checkdocs - python-pytest-cov python-pytest-enabler python-pytest-mypy python-setuptools @@ -13323,7 +13301,6 @@ (define-public python-ipyparallel (list python-ipython python-pytest python-pytest-asyncio - python-pytest-cov python-pytest-tornado python-testpath)) (propagated-inputs @@ -13549,7 +13526,6 @@ (define-public python-jupyter-core python-pip python-pre-commit python-pytest - python-pytest-cov python-pytest-timeout)) ;; This package provides the `jupyter` binary and thus also exports the ;; search paths. @@ -13725,7 +13701,6 @@ (define-public python-ipykernel python-ipyparallel-bootstrap python-pytest python-pytest-asyncio - python-pytest-cov python-pytest-timeout)) (home-page "https://ipython.org") (synopsis "IPython Kernel for Jupyter") @@ -13814,7 +13789,6 @@ (define-public python-pubmed-parser python-unidecode)) (native-inputs (list python-pytest - python-pytest-cov python-setuptools python-wheel)) (home-page "https://github.com/titipata/pubmed_parser") @@ -14173,7 +14147,6 @@ (define-public python-urwid "--ignore=tests/test_vterm.py"))) (native-inputs (list python-pytest - python-pytest-cov python-setuptools python-setuptools-scm python-wheel)) @@ -14751,8 +14724,10 @@ (define-public python-three-merge (propagated-inputs (list python-diff-match-patch)) (native-inputs - (list python-flaky python-pytest python-pytest-cov - python-pytest-runner python-pytest-timeout)) + (list python-flaky + python-pytest + python-pytest-runner + python-pytest-timeout)) (home-page "https://github.com/spyder-ide/three-merge") (synopsis "Library for merging two strings with respect to a base one") (description @@ -15077,7 +15052,6 @@ (define-public python-seaborn python-numpydoc python-mypy python-pytest - python-pytest-cov python-pytest-xdist python-pyyaml)) (home-page "https://seaborn.pydata.org/") @@ -15728,7 +15702,6 @@ (define-public python-sentry-sdk python-mock python-pyrsistent python-pytest - python-pytest-cov python-pytest-django python-pytest-forked python-pytest-localserver @@ -17239,7 +17212,6 @@ (define-public python-prettytable (list python-hatchling python-hatch-vcs python-pytest - python-pytest-cov python-pytest-lazy-fixtures python-setuptools-scm)) (propagated-inputs @@ -17404,7 +17376,6 @@ (define-public python-sniffio (native-inputs (list python-curio python-pytest - python-pytest-cov python-setuptools python-wheel)) (home-page "https://github.com/python-trio/sniffio") @@ -17550,7 +17521,6 @@ (define-public python-get-version (propagated-inputs (list python-pygments python-pytest - python-pytest-cov python-setuptools python-testpath)) (home-page "https://github.com/flying-sheep/get_version") @@ -17927,7 +17897,6 @@ (define-public python-path python-pygments python-pytest python-pytest-checkdocs - python-pytest-cov python-pytest-enabler python-pytest-flake8 python-pytest-mypy))) @@ -18032,7 +18001,6 @@ (define-public python-pip-run python-pygments python-pytest python-pytest-checkdocs - python-pytest-cov python-pytest-enabler python-pytest-flake8 python-pytest-mypy))) @@ -18415,7 +18383,6 @@ (define-public python-debugpy python-flask python-psutil python-pytest - python-pytest-cov python-pytest-timeout python-pytest-xdist python-requests)) @@ -18987,7 +18954,6 @@ (define-public python-notebook (list python-jupyter-server python-nbval python-pytest - python-pytest-cov python-requests python-requests-unixsocket2 python-setuptools @@ -19037,7 +19003,9 @@ (define-public python-ipywidgets (list python-comm python-ipython python-jupyterlab-widgets python-traitlets python-widgetsnbextension)) (native-inputs - (list python-ipykernel python-jsonschema python-pytest python-pytest-cov + (list python-ipykernel + python-jsonschema + python-pytest python-pytz)) (home-page "https://ipython.org") (synopsis "IPython HTML widgets for Jupyter") @@ -20731,7 +20699,6 @@ (define-public python-xdoctest ninja pybind11 python-pytest - python-pytest-cov python-scikit-build python-setuptools python-wheel)) @@ -20788,8 +20755,7 @@ (define-public python-waitress ;; https://github.com/Pylons/waitress/issues/443 (list #:test-flags #~(list "-k" "not test_service_port"))) (native-inputs - (list python-pytest python-pytest-cov - python-setuptools python-wheel)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/Pylons/waitress") (synopsis "Waitress WSGI server") (description @@ -20870,7 +20836,6 @@ (define-public python-cookiecutter git python-freezegun python-pytest - python-pytest-cov python-pytest-mock)) (propagated-inputs (list python-arrow python-binaryornot @@ -21272,8 +21237,10 @@ (define-public python-pyqtgraph (lambda _ (setenv "QT_QPA_PLATFORM" "offscreen")))))) (native-inputs - (list python-pytest python-pytest-cov python-pytest-xdist - python-setuptools python-wheel)) + (list python-pytest + python-pytest-xdist + python-setuptools + python-wheel)) (inputs (list qtbase-5)) (propagated-inputs @@ -21982,10 +21949,7 @@ (define-public python-rope (propagated-inputs (list python-pytoolconfig)) (native-inputs - (list python-pip - python-pre-commit - python-pytest - python-pytest-cov + (list python-pytest python-pytest-timeout python-setuptools python-wheel)) @@ -22549,7 +22513,6 @@ (define-public python-wcwidth "1dbj74q1iz349sdkxrkc90f7xd4y7a9bdvgxg3cqdcly7430rskj")))) (build-system pyproject-build-system) (native-inputs (list python-pytest - python-pytest-cov python-setuptools python-wheel)) (home-page "https://github.com/jquast/wcwidth") @@ -23105,7 +23068,6 @@ (define-public python-pyproject-api (list python-hatch-vcs python-hatchling python-pytest - python-pytest-cov python-pytest-mock python-setuptools python-wheel)) @@ -23964,7 +23926,9 @@ (define-public python-pymemcache #:test-flags '(list "--ignore=pymemcache/test/test_compression.py"))) (native-inputs - (list python-faker python-pytest python-pytest-cov python-setuptools + (list python-faker + python-pytest + python-setuptools python-wheel)) (home-page "https://github.com/pinterest/pymemcache") (synopsis "Comprehensive, fast, pure Python memcached client") @@ -24241,7 +24205,6 @@ (define-public python-async-lru (native-inputs (list python-pytest python-pytest-asyncio - python-pytest-cov python-pytest-timeout python-setuptools python-wheel)) @@ -24618,7 +24581,6 @@ (define-public python-natsort (native-inputs (list glibc-utf8-locales ;; Tests want en_US.UTF-8 python-hypothesis - python-pytest-cov python-pytest-mock python-pytest)) (propagated-inputs ; TODO: Add python-fastnumbers. @@ -26129,8 +26091,10 @@ (define-public python-mwclient (propagated-inputs (list python-requests-oauthlib python-six)) (native-inputs - (list python-mock python-pytest python-pytest-cov - python-pytest-runner python-responses)) + (list python-mock + python-pytest + python-pytest-runner + python-responses)) (home-page "https://github.com/btongminh/mwclient") (synopsis "MediaWiki API client") (description "This package provides a MediaWiki API client.") @@ -27177,7 +27141,6 @@ (define-public python-flasgger python-flex python-marshmallow python-pytest - python-pytest-cov python-setuptools python-wheel)) (home-page "https://github.com/rochacbruno/flasgger/") @@ -27898,7 +27861,6 @@ (define-public python-tempora (list python-freezegun python-pytest python-pytest-checkdocs - python-pytest-cov python-pytest-enabler python-pytest-flake8 python-pytest-freezegun @@ -29890,7 +29852,6 @@ (define-public python-numcodecs python-py-cpuinfo python-pydata-sphinx-theme python-pytest - python-pytest-cov python-setuptools python-setuptools-scm ;for correct version python-sphinx @@ -30918,7 +30879,7 @@ (define-public python-outcome (add-installed-pythonpath inputs outputs) (invoke "pytest" "-vv")))))) (native-inputs - (list python-pytest python-pytest-cov python-pytest-asyncio)) + (list python-pytest python-pytest-asyncio)) (propagated-inputs (list python-attrs)) (home-page "https://github.com/python-trio/outcome") @@ -31270,7 +31231,6 @@ (define-public python-apscheduler python-pyside-6 python-pytest python-pytest-asyncio - python-pytest-cov python-pytest-tornado5 python-wheel)) (home-page "https://github.com/agronholm/apscheduler") @@ -31976,7 +31936,7 @@ (define-public python-iocapture (invoke "py.test" "-v" "tests") #t))))) (propagated-inputs - (list python-flexmock python-pytest python-pytest-cov python-six)) + (list python-flexmock python-pytest python-six)) (home-page "https://github.com/oinume/iocapture") (synopsis "Python capturing tool for stdout and stderr") (description @@ -32114,7 +32074,9 @@ (define-public python-argh (when tests? (invoke "pytest" "-vv"))))))) (propagated-inputs - (list python-iocapture python-mock python-pytest python-pytest-cov + (list python-iocapture + python-mock + python-pytest python-pytest-xdist)) (home-page "https://github.com/neithere/argh/") (synopsis "Argparse wrapper with natural syntax") @@ -32257,7 +32219,6 @@ (define-public python-flit (list python-responses python-pygments-github-lexers python-pytest - python-pytest-cov python-sphinx python-sphinxcontrib-github-alt python-testpath)) @@ -32584,7 +32545,6 @@ (define-public python-watchdog (list python-pathtools python-pyyaml)) (native-inputs (list python-pytest - python-pytest-cov python-pytest-timeout python-setuptools python-wheel)) (home-page "https://github.com/gorakhargosh/watchdog") @@ -33815,7 +33775,6 @@ (define-public python-cmd2 (list python-pyperclip python-wcwidth)) (native-inputs (list python-pytest - python-pytest-cov python-pytest-mock python-setuptools python-setuptools-scm @@ -34538,7 +34497,7 @@ (define-public python-inform (arguments `(#:tests? #f)) ; PyPI tarball lacks tests (native-inputs - (list python-hypothesis python-pytest-cov python-pytest-runner)) + (list python-hypothesis python-pytest-runner)) (propagated-inputs (list python-arrow python-six)) (home-page "https://inform.readthedocs.io") @@ -35223,7 +35182,7 @@ (define-public python-qtsass (for-each make-file-writable (find-files ".")) #t))))) (native-inputs - (list python-flaky python-pytest python-pytest-cov python-pytest-runner)) + (list python-flaky python-pytest python-pytest-runner)) (propagated-inputs (list python-libsass)) (home-page "https://github.com/spyder-ide/qtsass") @@ -35619,7 +35578,6 @@ (define-public python-scikit-build python-packaging python-path python-pytest - python-pytest-cov python-pytest-mock python-pytest-virtualenv python-pytest-xdist @@ -36633,7 +36591,7 @@ (define-public python-pyan3 "python-pyan3-fix-absolute-path-bug.patch")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest python-pytest-cov python-setuptools python-wheel)) + (list python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-jinja2)) (home-page "https://github.com/Technologicat/pyan") @@ -36802,7 +36760,6 @@ (define-public python-minikanren (native-inputs (list python-pydocstyle python-pytest - python-pytest-cov python-sympy python-versioneer)) (propagated-inputs @@ -36958,7 +36915,8 @@ (define-public python-tablib (invoke "pytest"))))))) (native-inputs (list python-pandas ;; required for test-suite - python-pytest python-pytest-cov python-setuptools-scm)) + python-pytest + python-setuptools-scm)) (propagated-inputs (list python-markuppy python-odfpy @@ -37178,7 +37136,6 @@ (define-public python-platformdirs python-hatchling python-hatch-vcs python-pytest - python-pytest-cov python-pytest-mock)) (home-page "https://github.com/platformdirs/platformdirs") (synopsis "Determine the appropriate platform-specific directories") @@ -37487,7 +37444,7 @@ (define-public dynaconf (list python-click python-configobj python-dotenv-0.13.0 python-ruamel.yaml-0.16 python-toml python-tomli)) (native-inputs - (list python-django python-flask python-pytest python-pytest-cov + (list python-django python-flask python-pytest python-pytest-mock python-setuptools python-wheel)) (home-page "https://www.dynaconf.com/") (synopsis "The dynamic configurator for your Python project") @@ -38039,8 +37996,7 @@ (define-public python-ansicolors (base32 "1q3jqglkq4z0f6nkkn8bswcwqg012i2grrc27kabr8286dg4zycr")))) (build-system python-build-system) (native-inputs - (list python-pytest-cov - unzip)) + (list unzip)) (home-page "https://github.com/jonathaneunice/colors/") (synopsis "ANSI colors for Python") (description @@ -38219,7 +38175,6 @@ (define-public python-multipart (native-inputs (list python-hatchling python-pytest - python-pytest-cov python-pyyaml)) (home-page "https://github.com/andrew-d/python-multipart") (synopsis "Streaming multipart parser for Python") @@ -38289,7 +38244,6 @@ (define-public python-shtab (native-inputs (list bash python-pytest - python-pytest-cov python-pytest-timeout python-setuptools python-setuptools-scm @@ -38914,7 +38868,6 @@ (define-public python-scooby (list python-beautifulsoup4 python-numpy python-pytest - python-pytest-cov python-pyvips-for-python-scooby python-scipy)) (propagated-inputs diff --git a/gnu/packages/rdf.scm b/gnu/packages/rdf.scm index 58a485553e..c0b77eeb22 100644 --- a/gnu/packages/rdf.scm +++ b/gnu/packages/rdf.scm @@ -346,7 +346,7 @@ (define-public python-rdflib ;; These two tests attempt to use "pip install" "-k" "not test_sparqleval and not test_parser"))) (native-inputs - (list python-pytest python-pytest-cov python-poetry-core)) + (list python-pytest python-poetry-core)) (propagated-inputs (list python-isodate python-lxml @@ -401,7 +401,7 @@ (define-public python-rdflib-6 (("^Requires-Dist: isodate .*") "Requires-Dist: isodate (>=0.6.0)\n"))))))) (native-inputs - (list python-poetry-core python-pytest python-pytest-cov)) + (list python-poetry-core python-pytest)) (propagated-inputs (list python-html5lib python-isodate python-pyparsing)) (home-page "https://github.com/RDFLib/rdflib") diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index 375531b1ee..a5464046d3 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -583,7 +583,6 @@ (define-public python-fenics-dijitso (invoke "./runtests.sh")))))))) (native-inputs (list python-pytest - python-pytest-cov python-setuptools python-wheel)) (inputs diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm index 6847592a99..3bcf11915b 100644 --- a/gnu/packages/sphinx.scm +++ b/gnu/packages/sphinx.scm @@ -418,7 +418,6 @@ (define-public python-sphinx-design (native-inputs (list python-flit-core python-pytest - python-pytest-cov python-pytest-regressions)) (propagated-inputs (list python-sphinx)) @@ -794,7 +793,6 @@ (define-public python-sphinx-gallery python-numpy python-pillow python-pytest - python-pytest-cov python-setuptools python-sphinx python-wheel)) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 0344074366..7bc769404e 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2429,7 +2429,7 @@ (define-public python-pymc (lambda* (#:key tests? #:allow-other-keys) (when tests? (setenv "HOME" "/tmp"))))))) - (native-inputs (list python-pytest-cov python-versioneer)) + (native-inputs (list python-versioneer)) (propagated-inputs (list python-arviz python-cachetools python-cloudpickle @@ -2497,7 +2497,7 @@ (define-public python-patsy (propagated-inputs (list python-numpy python-scipy)) (native-inputs - (list python-pytest python-pytest-cov python-setuptools python-wheel)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/pydata/patsy") (synopsis "Describe statistical models and build design matrices") (description @@ -2620,7 +2620,6 @@ (define-public python-emcee (build-system pyproject-build-system) (propagated-inputs (list python-numpy)) (native-inputs (list python-pytest - python-pytest-cov python-setuptools python-setuptools-scm python-wheel)) @@ -7137,7 +7136,6 @@ (define-public python-rpy2 python-numpy python-pandas python-pytest - python-pytest-cov python-setuptools python-wheel)) (home-page "https://rpy2.github.io") @@ -7167,7 +7165,6 @@ (define-public python-rchitect (build-system pyproject-build-system) (propagated-inputs (list python-cffi python-packaging python-six)) (native-inputs (list python-pytest - python-pytest-cov python-pytest-mock python-setuptools python-wheel diff --git a/gnu/packages/task-management.scm b/gnu/packages/task-management.scm index 62f5bbf0f3..2ff5d7e596 100644 --- a/gnu/packages/task-management.scm +++ b/gnu/packages/task-management.scm @@ -530,7 +530,6 @@ (define-public todoman (list python-freezegun python-hypothesis python-pytest - python-pytest-cov python-pytest-runner python-pytz python-setuptools diff --git a/gnu/packages/telegram.scm b/gnu/packages/telegram.scm index a4cfc6a9ef..e31b9274de 100644 --- a/gnu/packages/telegram.scm +++ b/gnu/packages/telegram.scm @@ -841,7 +841,6 @@ (define-public tgcli (native-inputs `(("pytest" ,python-pytest) ("pytest-click" ,python-pytest-click) - ("pytest-cov" ,python-pytest-cov) ("mkdocs" ,python-mkdocs) ("mkdocs-material" ,python-mkdocs-material) ("requests-mock" ,python-requests-mock))) diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm index 004f170c25..28f1b46ca5 100644 --- a/gnu/packages/textutils.scm +++ b/gnu/packages/textutils.scm @@ -1758,7 +1758,6 @@ (define-public python-panflute (native-inputs (list python-configparser python-pandocfilters python-pytest - python-pytest-cov python-requests)) (home-page "http://scorreia.com/software/panflute/") (synopsis "Pythonic Pandoc filters") diff --git a/gnu/packages/time.scm b/gnu/packages/time.scm index 46e78c7ab7..9ed43d1885 100644 --- a/gnu/packages/time.scm +++ b/gnu/packages/time.scm @@ -450,7 +450,6 @@ (define-public python-tzlocal (native-inputs (list python-check-manifest python-pytest - python-pytest-cov python-pytest-mock)) (home-page "https://github.com/regebro/tzlocal") (synopsis "Local timezone information for Python") @@ -573,7 +572,6 @@ (define-public python-arrow (native-inputs (list python-chai python-pytest - python-pytest-cov python-pytest-mock python-pytz python-setuptools diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm index 53706a8de1..70679283c2 100644 --- a/gnu/packages/vpn.scm +++ b/gnu/packages/vpn.scm @@ -1036,7 +1036,6 @@ (define (install-man-page file) ;; For tests only. python-mock python-poetry-core - python-pytest-cov python-pytest-runner ;; For documentation only. python-sphinx diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm index ad338728fe..386dbfa036 100644 --- a/gnu/packages/web.scm +++ b/gnu/packages/web.scm @@ -5326,7 +5326,6 @@ (define-public python-tibanna (native-inputs (list python-poetry-core python-pytest - python-pytest-cov python-pytest-mock)) (home-page "https://github.com/4dn-dcic/tibanna") (synopsis "Tibanna runs portable workflows on the AWS Cloud") @@ -9027,7 +9026,7 @@ (define-public anonip (when tests? (invoke "pytest" "-vv" "tests.py" "anonip.py"))))))) (native-inputs - (list python-pytest python-pytest-cov)) + (list python-pytest)) (home-page "https://github.com/DigitaleGesellschaft/Anonip") (synopsis "Anonymize IP addresses in log files") (description diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm index 8d1bce1009..781dab49da 100644 --- a/gnu/packages/wm.scm +++ b/gnu/packages/wm.scm @@ -866,7 +866,6 @@ (define-public qtile (list pkg-config python-pep8-naming python-pytest - python-pytest-cov python-psutil python-setuptools python-setuptools-scm From patchwork Thu Feb 27 14:27:27 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39357 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5E1CB27BBEA; Thu, 27 Feb 2025 14:34:14 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D91A327BBE2 for ; Thu, 27 Feb 2025 14:34:13 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnexf-0005O8-2d; Thu, 27 Feb 2025 09:34:04 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnex2-0003pV-6G for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:27 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnex1-0006X2-6F for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:23 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=n7OTsZBIlPnk7Q72mzgS56BSUgndcuARXkvU1OtmrEs=; b=bCtw6m0pfePSvXI5RKo74VwE5mW+DpkIS1WTY+oIGfOyT6WYzZimJjI/LRrckIA9nn/EzuR8hZA3vHf3+lRYpb9SP8HNGCfBb9w33JIZUbFBRbMwwf78xAy2RKl05jUZ6u91uzZl9J4t9/hVgt06qGpo5sT5WxbnBWZmAVzwj3vB2S712nXQo+h+LcPXchHYEAtRrCpNdonyqPeeVTSm0t7VTBs4Kxbwv1ZoZri13FfZKqDsPmR/aJYzkSCRyrtE1dtrxn3DIkHh6ZHeaKdQyuhBgZGr8WWLTACRaU44s6NtUvmxO8pAAq9wbf2nsd2D/enGWUBp8SHx/Qlx6ieCaw==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnex0-0000ww-VT for guix-patches@gnu.org; Thu, 27 Feb 2025 09:33:23 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 26/48] gnu: python-django-contact-form: Remove python-pytest-cov native-input. 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[build-system]: Upgrade to pyproject-build-system. [arguments]<#:phases>: Remove coverage tests for check phase. Change-Id: I4d0fc406401b7e923f7efa084dbe8ea3753e50fc --- gnu/packages/django.scm | 7 ++----- 1 file changed, 2 insertions(+), 5 deletions(-) diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm index 287c6fceee..79712c4945 100644 --- a/gnu/packages/django.scm +++ b/gnu/packages/django.scm @@ -888,16 +888,13 @@ (define-public python-django-contact-form (sha256 (base32 "1my9hkrylckp5vfqg9b0kncrdlxjnwxll56sdciqn4v19i4wbq1y")))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments `(#:phases (modify-phases %standard-phases (replace 'check (lambda _ - (invoke "coverage" "run" "--source" "contact_form" - "runtests.py")))))) - (native-inputs - (list python-coverage)) + (invoke "python" "runtests.py")))))) (propagated-inputs (list python-django)) (home-page "https://github.com/ubernostrum/django-contact-form") From patchwork Thu Feb 27 14:27:28 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39377 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 66E7F27BBEA; Thu, 27 Feb 2025 14:38:10 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,TVD_SPACE_RATIO,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 20B5B27BBE2 for ; Thu, 27 Feb 2025 14:38:10 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnf0V-0000ff-9O; Thu, 27 Feb 2025 09:37:01 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnezd-0007Rj-Aa for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:05 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnezd-0006yn-1J for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:05 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=K9aiL6KMl3bYLFLTJoSq1zqcJqODJZCIy3EzLiMUA4M=; b=RmS8pyFZIx1y4MlbUdqOdjzdINIfugRVfepAdSUaRd+UuR1c+bYcOcYjYHj0X80VQnlkvSooyMhVxxtXGRhaQcwEOSMcp293OhZLKkF3YLjs9nzIkPum/W9Mi7gzPtvUukukGAsVjvj3NYZ6n1dp0BLxf17BIrmiasKlPImnODlxwVS1eNELwH2xlg6+gDuRD4LPRJZBw4+fSbLYFhY1oZt7X5+Rxy6ILVGX7Syp7GBV/lve/gBGx2u/5vnPua4VFmBF0FrHKxw/w7/w+gsI1wbZWlP/WyC+gPfGjjsy8rEDnimzko49ptHUs/FYQ0vayWu5QoCB8BEloGAs6nwh+w==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnezc-0001Ii-Pz for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:04 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 27/48] gnu: python-dateutil: Remove python-pytest-cov native-input. 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[arguments]<#:phases>: Add remove-pytest-cov-dep phase. Change-Id: Id82a147d6e40383ecc2661ac896b65b858c181e0 --- gnu/packages/time.scm | 18 ++++++++++++------ 1 file changed, 12 insertions(+), 6 deletions(-) diff --git a/gnu/packages/time.scm b/gnu/packages/time.scm index 9ed43d1885..5f07e0860a 100644 --- a/gnu/packages/time.scm +++ b/gnu/packages/time.scm @@ -277,14 +277,20 @@ (define-public python-dateutil (build-system pyproject-build-system) (arguments (list - #:test-flags '(list ; avoid freezegun dependency - "--ignore=dateutil/test/test_utils.py" - "--ignore=dateutil/test/test_rrule.py" - ;; XXX: Fails to get timezone from /etc/localtime. - "--ignore=dateutil/test/test_tz.py"))) + #:test-flags '(list "dateutil/test" "docs" + ;; avoid freezegun dependency + "--ignore=dateutil/test/test_utils.py" + "--ignore=dateutil/test/test_rrule.py" + ;; XXX: Fails to get timezone from /etc/localtime. + "--ignore=dateutil/test/test_tz.py") + #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'remove-pytest-cov-dep + (lambda _ + (substitute* "dateutil/test/conftest.py" + (("item\\.add_marker\\(pytest\\.mark\\.no_cover\\)") + "pass"))))))) (native-inputs (list python-pytest - python-pytest-cov python-setuptools python-setuptools-scm python-wheel)) From patchwork Thu Feb 27 14:27:29 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39390 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5D19827BBEB; Thu, 27 Feb 2025 14:40:10 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 768F827BBE9 for ; Thu, 27 Feb 2025 14:40:08 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnezy-0007y5-Gq; Thu, 27 Feb 2025 09:36:26 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnezc-0007QD-0h for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:04 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnezb-0006yh-NG for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:03 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=fxaYjtcyOXn3z/teFT1RxS6BnafBFYy0ntLcWiPoH1I=; b=hUL0ilzM393wEP8scKwcgMXE8ftYbVjc5qNzm/cXZ5e6bxIez4KVtA7SUQ3VJzplDQSNpHcsxgYKwNwiKcgJuw+TV5oBhifp3JEBL9i0NVDmKHR9u/4OrIlDffRB0UPWQmdkDBhBa+ZUgkXaJLBfyqaNT8UgeSn50Y95HiDNpik7+QeXpMu6b/liZjE8EJ9ob6DwXi+d9VI8X79BCLhcYlluKSKeJ49GCim2GL1QZjekPshPMU/hIBWRwt47LyAEKXczSTvr8mo++HzDB8CzufAw2vnV6tndYekPNTXZWImpz4CL01XMY8yN0eEUK7YIwrvN58F1bR9Q28VStNsmuQ==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnezb-0001IO-EN for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:03 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 28/48] build-system/pyproject: Remove python-pytest-isort native-input. 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[native-inputs]: Remove python-pytest-flake8. --- gnu/packages/bioinformatics.scm | 3 +-- gnu/packages/check.scm | 2 -- gnu/packages/dav.scm | 1 - gnu/packages/debug.scm | 2 +- gnu/packages/matrix.scm | 1 - gnu/packages/python-check.scm | 5 +++-- gnu/packages/python-web.scm | 3 +-- gnu/packages/python-xyz.scm | 16 ++-------------- 8 files changed, 8 insertions(+), 25 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5cb3f86853..2fa52eb5b1 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5425,8 +5425,7 @@ (define-public python-muon python-tqdm python-umap-learn)) (native-inputs (list python-flit-core - python-pytest - python-pytest-flake8)) + python-pytest)) (home-page "https://github.com/scverse/muon") (synopsis "Multimodal omics analysis framework") (description "muon is a multimodal omics Python framework.") diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm index 57e62f6af0..ee0f4385e2 100644 --- a/gnu/packages/check.scm +++ b/gnu/packages/check.scm @@ -2944,7 +2944,6 @@ (define-public python-pytest-enabler python-toml)) (native-inputs (list python-pytest python-pytest-checkdocs - python-pytest-flake8 python-pytest-mypy python-setuptools python-setuptools-scm @@ -3117,7 +3116,6 @@ (define-public python-pytest-perf (list python-pytest python-pytest-checkdocs python-pytest-enabler - python-pytest-flake8 python-pytest-mypy python-setuptools python-wheel)) diff --git a/gnu/packages/dav.scm b/gnu/packages/dav.scm index ff5d8409b0..71d12a0ca1 100644 --- a/gnu/packages/dav.scm +++ b/gnu/packages/dav.scm @@ -58,7 +58,6 @@ (define-public radicale (build-system pyproject-build-system) (native-inputs (list python-pytest - python-pytest-flake8 python-setuptools python-waitress python-wheel)) diff --git a/gnu/packages/debug.scm b/gnu/packages/debug.scm index 5580b4eaf4..59d17f2623 100644 --- a/gnu/packages/debug.scm +++ b/gnu/packages/debug.scm @@ -255,7 +255,7 @@ (define-public c-vise (file-name (git-file-name name version)))) (build-system cmake-build-system) (native-inputs - (list flex python-pytest python-pytest-flake8)) + (list flex python-pytest)) (inputs (list bash-minimal clang llvm unifdef python python-pebble python-psutil python-chardet)) diff --git a/gnu/packages/matrix.scm b/gnu/packages/matrix.scm index 970093d345..e7c1468da4 100644 --- a/gnu/packages/matrix.scm +++ b/gnu/packages/matrix.scm @@ -200,7 +200,6 @@ (define-public python-matrix-nio python-pytest-aiohttp python-pytest-asyncio python-pytest-benchmark - python-pytest-flake8 python-setuptools python-wheel)) (propagated-inputs diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index 09a56f172e..c7187d1523 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -673,9 +673,10 @@ (define-public python-pytest-csv (base32 "17518f2fn5l98lyk9p8r7215c1whi61imzrh6ahrmcksr8w0zz04")))) (build-system pyproject-build-system) + (arguments + (list #:test-flags '(list "--ignore=tests/test_flake8.py"))) (native-inputs - (list python-pytest-flake8 - python-pytest-xdist + (list python-pytest-xdist python-setuptools python-tabulate python-wheel)) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index f0ccbf3b92..dcfe693178 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -2309,8 +2309,7 @@ (define-public python-mechanicalsoup (propagated-inputs (list python-beautifulsoup4 python-lxml python-requests python-six)) (native-inputs - (list python-pytest-flake8 - python-pytest-httpbin + (list python-pytest-httpbin python-pytest-mock python-pytest-runner python-requests-mock diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 1dec12b664..86655a9d42 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -12037,7 +12037,6 @@ (define-public python-pyvips (native-inputs (list python-pyperf python-pytest - python-pytest-flake8 python-pytest-runner)) (inputs (list glib vips)) @@ -12792,7 +12791,6 @@ (define-public python-importlib-resources (list python-pytest python-pytest-checkdocs python-pytest-enabler - python-pytest-flake8 python-pytest-mypy python-setuptools-57 python-setuptools-scm)) @@ -12940,7 +12938,6 @@ (define-public python-jaraco-classes (native-inputs (list python-pytest python-pytest-checkdocs - python-pytest-flake8 python-pytest-mypy python-setuptools python-setuptools-scm @@ -13031,7 +13028,6 @@ (define-public python-jaraco-context (native-inputs (list python-pytest python-pytest-checkdocs - python-pytest-flake8 python-pytest-mypy python-setuptools python-setuptools-scm @@ -13064,7 +13060,6 @@ (define-public python-jaraco-functools (list python-jaraco-classes python-pytest python-pytest-checkdocs - python-pytest-flake8 python-pytest-mypy python-setuptools python-setuptools-scm @@ -13094,7 +13089,6 @@ (define-public python-jaraco-packaging (propagated-inputs (list python-pytest python-pytest-checkdocs - python-pytest-flake8 python-rst.linker python-setuptools python-setuptools-scm @@ -17898,7 +17892,6 @@ (define-public python-path python-pytest python-pytest-checkdocs python-pytest-enabler - python-pytest-flake8 python-pytest-mypy))) (properties (alist-delete 'hidden? (package-properties @@ -18002,7 +17995,6 @@ (define-public python-pip-run python-pytest python-pytest-checkdocs python-pytest-enabler - python-pytest-flake8 python-pytest-mypy))) (properties (alist-delete 'hidden? (package-properties python-pip-run-bootstrap))))) @@ -27862,7 +27854,6 @@ (define-public python-tempora python-pytest python-pytest-checkdocs python-pytest-enabler - python-pytest-flake8 python-pytest-freezegun python-pytest-mypy python-setuptools-scm @@ -30536,7 +30527,7 @@ (define-public python-dask-image python-scipy python-tifffile)) (native-inputs - (list python-pytest-flake8 python-pytest)) + (list python-pytest)) (home-page "https://github.com/dask/dask-image") (synopsis "Distributed image processing") (description "This is a package for image processing with Dask arrays. @@ -31630,10 +31621,7 @@ (define-public python-cairosvg (list python-cairocffi python-cssselect2 python-defusedxml python-pillow python-tinycss2)) (native-inputs - (list python-pytest-flake8 - python-pytest-runner - python-setuptools - python-wheel)) + (list python-pytest-runner python-setuptools python-wheel)) (home-page "https://cairosvg.org/") (synopsis "SVG to PDF/PS/PNG converter based on Cairo") (description "CairoSVG is a SVG converter based on Cairo. 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(package-properties python-path-bootstrap))))) @@ -17994,8 +17986,7 @@ (define-public python-pip-run python-pygments python-pytest python-pytest-checkdocs - python-pytest-enabler - python-pytest-mypy))) + python-pytest-enabler))) (properties (alist-delete 'hidden? (package-properties python-pip-run-bootstrap))))) @@ -27855,7 +27846,6 @@ (define-public python-tempora python-pytest-checkdocs python-pytest-enabler python-pytest-freezegun - python-pytest-mypy python-setuptools-scm python-types-freezegun python-types-pytz From patchwork Thu Feb 27 14:27:32 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39376 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 8507727BBE9; Thu, 27 Feb 2025 14:38:07 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 38A6C27BBE2 for ; Thu, 27 Feb 2025 14:38:06 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnf0p-0001so-PN; Thu, 27 Feb 2025 09:37:19 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnezj-0007lU-3F for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:15 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnezi-00070E-Q9 for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:10 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=QwfxBOYfGTftWGMzVZz5rnc397ntj3JvpzAHC3ofjfs=; b=oj1QPdSfhB5o4DusjoYdZYUksX3QrVoJCKQia1uiVeLqu4BUNHOthE+viQAxWpyU2YLWH2KX4jXGif0LvgKyGaYzkq6vGnGLu7eYts8ZUO6FCaBWHYlAKtEb3pMVlJgqrBMKVYMyRhy8mauxQVYGv7hh0NxuCkbNMJn50hyziQP16W5B5SJ4rw9/aPrhuxquBy7SFpqzyNA82ygvjNSVwId27l4+rbovBxqsggs9/mdv7OCkumRO6Uy/NoBAGxhS2gdK7B0SRFAU4RWDKhejYSqc/pYWNXpVGEO8gy9NpRzJcW83QmjyaGj0oeDvmueoQRu09M7GtfAb6c7miNt/Vw==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnezi-0001K8-Jy for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:10 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 31/48] build-system/pyproject: Stop hiding options. 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(python-openapi-schema-validator, python-openapi-spec-validator) [arguments]<#:phases>: Remove 'remove-coverage-pytest-options phase. (python-cssselect2)[arguments]: Remove uneeded field. (python-quart)[arguments]: Remove uneeded field. (python-jsonpickle)[arguments]<#:test-flags>: Remove uneeded test-flags. * gnu/packages/python-xyz.scm (python-cattrs) [arguments]<#:phases>: Remove arguments hiding coverage options. (python-blessed)[arguments]: Remove uneeded field. python-pytest-cov remove option --- gnu/packages/pdf.scm | 6 +---- gnu/packages/python-crypto.scm | 1 - gnu/packages/python-web.scm | 42 +++------------------------------- gnu/packages/python-xyz.scm | 8 +------ 4 files changed, 5 insertions(+), 52 deletions(-) diff --git a/gnu/packages/pdf.scm b/gnu/packages/pdf.scm index ce63306c07..7308b0c661 100644 --- a/gnu/packages/pdf.scm +++ b/gnu/packages/pdf.scm @@ -805,9 +805,6 @@ (define-public python-pydyf (sha256 (base32 "18q43g5d9455msipcgd5fvnh8m4a2rz189slzfg80yycjw66rshs")))) (build-system pyproject-build-system) - (arguments - (list - #:test-flags #~'("-c" "/dev/null"))) (propagated-inputs (list python-pillow)) (native-inputs (list ghostscript @@ -1669,8 +1666,7 @@ (define-public weasyprint (build-system pyproject-build-system) (arguments (list - #:test-flags #~(list "-c" "/dev/null" - "-n" (number->string (parallel-job-count))) + #:test-flags #~(list "-n" (number->string (parallel-job-count))) #:phases #~(modify-phases %standard-phases (add-after 'unpack 'patch-library-paths diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm index ec4e074a6b..9750302705 100644 --- a/gnu/packages/python-crypto.scm +++ b/gnu/packages/python-crypto.scm @@ -268,7 +268,6 @@ (define-public python-keyring (build-system pyproject-build-system) (arguments (list - #:test-flags '(list "-c" "/dev/null") ;avoid extra test dependencies #:phases #~(modify-phases %standard-phases (add-before 'check 'workaround-test-failure diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 0b1468fc28..c5b904d229 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -1267,8 +1267,7 @@ (define-public python-asgi-lifespan (arguments (list #:test-flags - '(list "-c" "/dev/null" ;ignore coverage-related options - "-k" + '(list "-k" (string-append ;; XXX: Some tests fail because of "Exceptions from Trio nursery" "not (test_lifespan_manager[trio-None-None-StartupFailed]" @@ -2259,10 +2258,7 @@ (define-public python-jsonpickle (build-system pyproject-build-system) (arguments (list - #:test-flags - ;; Prevent running the flake8 and black pytest plugins, which only tests - ;; style and frequently causes harmless failures. - '(list "-o" "addopts=''" "tests") + #:test-flags '(list "tests") #:phases '(modify-phases %standard-phases (add-before 'check 'pre-check @@ -3014,10 +3010,6 @@ (define-public python-openapi-schema-validator '(list "-k" "not test_array_prefixitems_invalid") #:phases #~(modify-phases %standard-phases - (add-after 'unpack 'remove-coverage-pytest-options - (lambda _ - (substitute* "pyproject.toml" - (("^--cov.*") "")))) ;; See https://github.com/python-openapi/openapi-schema-validator/issues/204 (add-after 'unpack 'relax-requirements (lambda _ @@ -3061,13 +3053,7 @@ (define-public python-openapi-spec-validator (list ;; These tests attempt to fetch resources from the Internet #:test-flags '(list "--ignore-glob=tests/integration/validation/**" - "-k" "not example") - #:phases - #~(modify-phases %standard-phases - (add-after 'unpack 'remove-coverage-pytest-options - (lambda _ - (substitute* "pyproject.toml" - (("^--cov.*") ""))))))) + "-k" "not example"))) (native-inputs (list python-poetry-core python-pytest)) @@ -3106,9 +3092,6 @@ (define-public python-openapi-core (list #:test-flags '(list "tests/unit" - ;; Ignore Pytest configuration in setup.cfg that adds - ;; unwanted flake8 and coverage options. - "-c" "/dev/null" "-k" "not test_chars_valid"))) (native-inputs (list python-django python-falcon @@ -7104,17 +7087,6 @@ (define-public python-cssselect2 (sha256 (base32 "1j2fcr217rsvkipsg6zjq03rl64rxnvb5hqqpx0dv58fhspvkywk")))) (build-system pyproject-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'disable-linters - ;; Their check fails; none of our business. - (lambda _ - (substitute* '("setup.py" "pyproject.toml") - (("'pytest-flake8',") "") - (("'pytest-isort',") "") - (("--flake8") "") - (("--isort") ""))))))) (propagated-inputs (list python-tinycss2)) (native-inputs @@ -9753,14 +9725,6 @@ (define-public python-quart (sha256 (base32 "1h5ifv8g9dc9m07vj4v7dfalam83v38545d845vvgys1gan1pscd")))) (build-system pyproject-build-system) - (arguments - (list - #:phases - #~(modify-phases %standard-phases - (add-after 'unpack 'remove-coverage-pytest-options - (lambda _ - (substitute* "pyproject.toml" - (("--no-cov-on-fail") ""))))))) (native-inputs (list python-poetry-core python-pytest diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 3146352420..18b5470573 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -22876,9 +22876,7 @@ (define-public python-cattrs (substitute* "pyproject.toml" ;; Fix version string (("dynamic = \\[\"version\"\\]") - (string-append "version = \"" #$version "\"")) - ;; Just run pytest with no frills - (("addopts = \"-l.*") "")))) + (string-append "version = \"" #$version "\""))))) ;; XXX Our python-hypothesis package is too old. (add-after 'unpack 'compatibility (lambda _ @@ -33951,10 +33949,6 @@ (define-public python-blessed ;; Don't get hung up on Windows test failures. '(delete-file "blessed/win_terminal.py")))) (build-system pyproject-build-system) - (arguments - (list - ;; Avoid python-pytest-coverage - #:test-flags '(list "-c /dev/null"))) (propagated-inputs (list python-six python-wcwidth)) (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/jquast/blessed") From patchwork Thu Feb 27 14:27:33 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39373 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 689A427BBEA; Thu, 27 Feb 2025 14:37:56 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,TVD_SPACE_RATIO,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 2D27B27BBE2 for ; 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Change-Id: Iba2670b47e479c20a3f4ae1c703ad9fe815e3764 --- gnu/packages/machine-learning.scm | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 360325c768..eb818d672f 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -5876,8 +5876,7 @@ (define-public python-linear-operator python-pytorch python-scipy python-typeguard)) - (native-inputs (list python-flake8-print - python-pytest + (native-inputs (list python-pytest python-setuptools python-setuptools-scm)) (home-page "https://github.com/cornellius-gp/linear_operator/") From patchwork Thu Feb 27 14:27:34 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39400 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id A327627BBE2; Thu, 27 Feb 2025 14:41:48 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 8DC6427BBEA for ; Thu, 27 Feb 2025 14:41:46 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnf0x-0002D9-Vl; Thu, 27 Feb 2025 09:37:28 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnezk-0007pJ-PQ for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:16 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnezk-00070V-Ct for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:12 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=5DUbopLX4tm9XvAb0TbpfGnM43Brwut2KtiLbv0Tl20=; b=vLUW3TfRYL28rzLaQHsfynFXzo0v5lCGeGjW23Ru68Fx3AbVKTCp2m8rPNUqzPzQKfmWDHSRx0OOdaeFN4XGG+OXuHiMwCHw6RfdTZxYrzd0QULDPSmQhFhhD8pOh7rnOVrtaWbZjZ41FFt4ihBzW3q4vf83IgehCk4dd1kv5r+h7Mca2NDdUWAcBtABWyXMgtSrM0kyqKNor8RANz6WStefU8SDFYaZLLcNqt8i+8p0J8SsNWjYY3eohO8Z8DAFp6SGYE8tVl8dZPo0D/OEmFazRghXpTGEle56HlTwoyWem7D+kxDaJkbO4Opcl094TF+JRAopbD78z+TY6b7lvg==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnezk-0001KZ-3x for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:12 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 33/48] gnu: multidict: Remove python-pytest-cov native-input. 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[arguments]{phases}: Add 'avoid-pytest-cov-preload phase. --- gnu/packages/python-xyz.scm | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 18b5470573..395d091fd5 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -10988,9 +10988,15 @@ (define-public python-multidict (base32 "0jlgjpclkh5g6vr1danl6alz0cza2jlzdqh3q03d4s8ckfzjxbi2")))) (build-system pyproject-build-system) + (arguments + (list #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'avoid-pytest-cov-preload + (lambda _ + (substitute* "pytest.ini" + (("-p pytest_cov") ""))))))) (propagated-inputs (list python-typing-extensions)) (native-inputs - (list python-pytest python-pytest-cov python-setuptools python-wheel)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/aio-libs/multidict/") (synopsis "Multidict implementation") (description "Multidict is dict-like collection of key-value pairs From patchwork Thu Feb 27 14:27:35 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39380 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 6487927BBEA; Thu, 27 Feb 2025 14:38:20 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 2CB6427BBE2 for ; Thu, 27 Feb 2025 14:38:20 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnf1f-000439-9t; Thu, 27 Feb 2025 09:38:11 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnezo-0007pn-EB for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:21 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnezl-00070k-Vz for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:14 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=YOSoJlV4xj6pYWypZfgV0toMyI32UJTBI3lzITT4lr4=; b=N5CUO7IasPze39hIVC/12PhAUwnPLVUJrqacAcTSSO9MmquEUZzxM7kEqjfXtpquu2m34JdDuvpkWIXyRryiEpr4xxHQWQyeOjjmjQf9fqja9YSza6nApn9ZM++cb+o4P3+2ZqSAo8nNMLqdRzfxzMfGcBGEPnaxXMnW3WAHhJWb06FaL0BAW9A6yyDufz60hORtDRav2IBERonjGdjuej0lrYt+/CG0pc9LcqKBTlLtru0D0Vqs0mAjX2P9ZGwEGne02NYeMpN6kBSPTTsq1ec7T+1YggyCeS5kdQ/B7c4Dvg+nmQ58i0XFFJexHfRfxvHziE1xh4s5Ic8TN0ahAg==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnezl-0001Kz-NO for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:13 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 34/48] gnu: python-isort: Remove python-black native-input. 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[arguments]: Adapt {test-flags} accordingly. --- gnu/packages/python-xyz.scm | 19 +++++++++---------- 1 file changed, 9 insertions(+), 10 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 395d091fd5..9daa1cc8e4 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -25918,15 +25918,15 @@ (define-public python-isort (list #:test-flags #~(list "tests/unit/" - "-k" (string-join - (list - "not test_gitignore" - ;; See . - "test_isort_should_warn_on_empty_custom_config_issue_1433" - ;; Fails because of an unexpected linebreak. - "test_black_pyi_file") - " and not ") - "--ignore=tests/unit/test_deprecated_finders.py") + "-k" + (string-join + (list + "not test_gitignore" + ;; See . + "test_isort_should_warn_on_empty_custom_config_issue_1433") + " and not ") + "--ignore=tests/unit/test_deprecated_finders.py" + "--ignore=tests/unit/profiles/test_black.py") #:phases #~(modify-phases %standard-phases (add-after 'install 'install-example-plugins @@ -25945,7 +25945,6 @@ (define-public python-isort "install" "--user" "--no-deps" example-whls))))))) (native-inputs (list python-colorama - python-black python-hypothesmith python-libcst-minimal python-natsort From patchwork Thu Feb 27 14:27:36 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39397 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id B466A27BBEA; Thu, 27 Feb 2025 14:41:02 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 0E7C527BBE2 for ; Thu, 27 Feb 2025 14:41:02 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnf1E-0002s8-Ux; Thu, 27 Feb 2025 09:37:46 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnezo-0007q1-RC for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:21 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnezn-00070s-K7 for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:16 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=n6yB1nFVyGyYevoDbUkryA/CoqCXh3HxZCCgqtDlZ/k=; b=Fv4AIdUt63FAaKPAqBS0SrZkvV7HEH3uxBJGoRHEHo3FIgotnMBuM1isn6F4l3nWGXzxtNENNyovKsmjs2qYViBeMeO+Vq/QucEJIEk7w7wWxvmcOwFOUeB3KrKPaMGse20yKsOSviEZznqGuvvgzc4TiYGJwMPtttFW+UXERuoYykABxTpH/G14hKN9TY8RfYvP4lr0jdOaOG7vX5cu2TKq/ayEbkz9mxrdkNMOiO0ftAWAqoavC/2JWBFdXposnQBi8BeF+ANg/KPZKTr3fylB08E+4Mze6KnZknM5EqkTQ9awHBaGMzmqdRNaZ/hjNKADu/L/8xUgBC8vy7TeZw==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnezn-0001LE-AI for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:15 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 35/48] build-system/pyproject: Remove python-mypy native-input. 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bh=n6yB1nFVyGyYevoDbUkryA/CoqCXh3HxZCCgqtDlZ/k=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1740666685; v=1; b=M2Y2cuN/YGAo0dxHjj/pru4exlkjq4ESSuISTQckDGHJNqtBi2dOQ8oew5FqCovw/iI0P8VZ btqiRef0iUUS8kjjvW24S/Gogb9N4OzmqR+mxlFCwhFgorXKgZHTOzhjC//mtZhPOYvIj5HMNr8 hKIQ/pIH22DTvVlymKDHHHVtTn93KFmpRzMRHjm7V9ug1RvTLhUYAXZZPMM6vMwVrlJaMiKwLzf JXt4IK2AGMxs37CQYlP/qercQT0ZlHdkUORKXJ6A3OxVjxnlZoloJGP1I9ckRqpVh2pt4RkXn9+ ziwPUqqpF8+b9KNQ8Xu5UQpMrFKCSjpS/Ikf1+Ir93yvg== X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-to: Nicolas Graves X-ACL-Warn: , Nicolas Graves via Guix-patches X-Patchwork-Original-From: Nicolas Graves via Guix-patches via From: Nicolas Graves Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches --- gnu/packages/bioinformatics.scm | 2 -- gnu/packages/check.scm | 1 - gnu/packages/databases.scm | 3 +-- gnu/packages/finance.scm | 1 - gnu/packages/matrix.scm | 1 - gnu/packages/openstack.scm | 1 - gnu/packages/python-check.scm | 8 ++------ gnu/packages/python-crypto.scm | 1 - gnu/packages/python-science.scm | 3 +-- gnu/packages/python-web.scm | 2 -- gnu/packages/python-xyz.scm | 7 ++----- 11 files changed, 6 insertions(+), 24 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2fa52eb5b1..ce16f31637 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3167,7 +3167,6 @@ (define-public python-metacells python-threadpoolctl python-umap-learn)) (native-inputs (list python-bumpversion - python-mypy python-mypy-extensions python-pandas-stubs python-pytest @@ -6392,7 +6391,6 @@ (define-public python-schema-salad (native-inputs (list python-black python-cachecontrol - python-mypy python-pytest python-pytest-runner python-setuptools diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm index 40116749a9..3c9373648f 100644 --- a/gnu/packages/check.scm +++ b/gnu/packages/check.scm @@ -2826,7 +2826,6 @@ (define-public python-crosshair (native-inputs (list python-icontract ;optional python-importlib-metadata - python-mypy python-numpy python-pytest python-pytest-xdist)) diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index d124ba186c..83363cfedd 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -4141,8 +4141,7 @@ (define-public python-aiosqlite (lambda* (#:key tests? #:allow-other-keys) (when tests? (invoke "python" "-m" "aiosqlite.tests"))))))) - (native-inputs (list python-flit-core - python-mypy)) + (native-inputs (list python-flit-core)) (home-page "https://github.com/jreese/aiosqlite") (synopsis "Asyncio bridge for sqlite3") diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm index eb676592b3..ddc9954d8e 100644 --- a/gnu/packages/finance.scm +++ b/gnu/packages/finance.scm @@ -2068,7 +2068,6 @@ (define-public fava python-werkzeug)) (native-inputs (list python-babel - python-mypy python-pytest python-setuptools python-types-setuptools diff --git a/gnu/packages/matrix.scm b/gnu/packages/matrix.scm index e7c1468da4..e503d17b91 100644 --- a/gnu/packages/matrix.scm +++ b/gnu/packages/matrix.scm @@ -193,7 +193,6 @@ (define-public python-matrix-nio python-hpack python-hyperframe python-hypothesis - python-mypy python-mypy-extensions python-poetry-core python-pytest diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm index 84696a586f..2b74994cc5 100644 --- a/gnu/packages/openstack.scm +++ b/gnu/packages/openstack.scm @@ -552,7 +552,6 @@ (define-public python-oslo.context (native-inputs (list python-fixtures python-hacking - python-mypy python-oslotest python-pbr python-stestr)) diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index c7187d1523..ac9243b8f4 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -585,8 +585,7 @@ (define-public python-green (when tests? (apply invoke "python" "-m" "green" test-flags))))))) (native-inputs - (list python-mypy - python-setuptools + (list python-setuptools python-testtools python-wheel)) (propagated-inputs @@ -814,7 +813,6 @@ (define-public python-icontract (native-inputs (list python-astor python-asyncstdlib - python-mypy python-numpy python-setuptools python-typeguard @@ -2620,7 +2618,6 @@ (define-public python-nptyping (native-inputs (list python-beartype python-feedparser - python-mypy python-pandas python-pytest python-setuptools @@ -3113,8 +3110,7 @@ (define-public python-sybil (sha256 (base32 "0r491k91fi2nb0kdd6di8cb2kxcvsk1xzw3sgwsxhhg4qynsp3bi")))) (build-system pyproject-build-system) - (native-inputs (list python-mypy - python-myst-parser + (native-inputs (list python-myst-parser python-pytest python-pyyaml python-seedir diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm index 9750302705..ca4539c551 100644 --- a/gnu/packages/python-crypto.scm +++ b/gnu/packages/python-crypto.scm @@ -584,7 +584,6 @@ (define-public python-cryptography python-cffi python-click python-cryptography-vectors - python-mypy python-pretend python-pytest python-pytest-benchmark diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 55d522b21c..80aa14e166 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -4054,8 +4054,7 @@ (define-public python-pynetdicom python-pytest-xdist python-sphinx python-sphinx-rtd-theme)) - (propagated-inputs (list python-mypy - python-numpydoc + (propagated-inputs (list python-numpydoc python-pydicom python-pyfakefs python-sqlalchemy)) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index c5b904d229..0d343e79e3 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -8850,7 +8850,6 @@ (define-public python-sanic python-chardet python-cryptography python-docutils - python-mypy python-pygments python-pytest python-pytest-benchmark @@ -9873,7 +9872,6 @@ (define-public python-scrapy python-zope-interface)) (native-inputs (list nss-certs-for-test - python-mypy python-pexpect python-pytest python-pytest-xdist diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 9daa1cc8e4..ad6f9c61f2 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -9496,7 +9496,6 @@ (define-public python-numpy meson-python pkg-config python-hypothesis - python-mypy python-pytest python-pytest-xdist python-setuptools @@ -9575,7 +9574,6 @@ (define-public python-numpy-2 ninja pkg-config python-hypothesis - python-mypy python-pytest python-pytest-xdist python-setuptools @@ -9817,7 +9815,6 @@ (define-public python-multiscale-spatial-image python-nbmake python-pooch python-pytest - python-pytest-mypy python-urllib3 python-zarr)) (home-page "https://github.com/spatial-image/multiscale-spatial-image") @@ -13401,7 +13398,6 @@ (define-public python-traitlets (native-inputs (list python-argcomplete python-hatchling - python-mypy python-pytest python-pytest-mock python-pytest-mypy-testing)) @@ -15043,7 +15039,6 @@ (define-public python-seaborn python-ipykernel python-nbconvert python-numpydoc - python-mypy python-pytest python-pytest-xdist python-pyyaml)) @@ -28461,6 +28456,8 @@ (define-public python-typeguard (sha256 (base32 "06y22d1f5dhpyl71wbhsaibig5hvc2v44pw795yb8lxl02fsh8hd")))) (build-system pyproject-build-system) + (arguments + (list #:test-flags ''("--ignore=tests/mypy"))) (native-inputs (list python-pytest python-setuptools From patchwork Thu Feb 27 14:27:37 2025 Content-Type: text/plain; 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"--deselect=tests/test_oddball.py::DoctestTest::test_doctest") + ;; This is one of the rare cases where our plugin causes a test to fail. + #:use-pytest-plugin? #f #:phases #~(modify-phases %standard-phases (add-after 'unpack 'patch-pyproject @@ -2997,7 +2999,9 @@ (define-public python-pytest-mypy (build-system pyproject-build-system) (arguments (list - #:test-flags #~(list "--numprocesses" "auto"))) + #:use-pytest-plugin? #f + #:test-flags #~(list "--numprocesses" + (number->string (parallel-job-count))))) (native-inputs (list python-pexpect python-pytest-xdist diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index ac9243b8f4..bbf3e47655 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -1704,6 +1704,7 @@ (define-public python-pytest-flake8 (base32 "1rhz7mxcg7x9dbabfcjai3zxikfgw7az07m4ddf92bg35ib3byw8")))) (build-system pyproject-build-system) + (arguments (list #:use-pytest-plugin? #f)) (native-inputs (list python-pytest python-setuptools diff --git a/guix/build-system/pyproject.scm b/guix/build-system/pyproject.scm index bdf8f440ac..1cd38ce349 100644 --- a/guix/build-system/pyproject.scm +++ b/guix/build-system/pyproject.scm @@ -93,6 +93,7 @@ (define private-keywords (define* (pyproject-build name inputs #:key source (tests? #t) + (use-pytest-plugin? #t) (configure-flags ''(@)) (backend-path #f) (build-backend #f) @@ -125,6 +126,7 @@ (define build #:test-backend #$test-backend #:test-flags #$test-flags #:tests? #$tests? + #:use-pytest-plugin? #$use-pytest-plugin? #:phases #$(if (pair? phases) (sexp->gexp phases) phases) diff --git a/guix/build/pyproject-build-system.scm b/guix/build/pyproject-build-system.scm index 2df9f2f479..a96ec05ad6 100644 --- a/guix/build/pyproject-build-system.scm +++ b/guix/build/pyproject-build-system.scm @@ -231,7 +231,8 @@ (define-syntax-rule (with-guix-pytest-plugin inputs exp ...) "Evaluate EXP in a context where the Guix pytest plugin is added." (call-with-guix-pytest-plugin inputs (lambda () exp ...))) -(define* (check #:key inputs tests? test-backend test-flags #:allow-other-keys) +(define* (check #:key inputs tests? test-backend test-flags use-pytest-plugin? + #:allow-other-keys) "Run the test suite of a given Python package." (if tests? ;; Unfortunately with PEP 517 there is no common method to specify test @@ -254,8 +255,10 @@ (define* (check #:key inputs tests? test-backend test-flags #:allow-other-keys) (format #t "Using ~a~%" use-test-backend) (match use-test-backend ('pytest - (with-guix-pytest-plugin inputs - (apply invoke pytest "-vv" test-flags))) + (if use-pytest-plugin? + (with-guix-pytest-plugin inputs + (apply invoke pytest "-vv" test-flags)) + (apply invoke pytest "-vv" test-flags))) ('nose (apply invoke nosetests "-v" test-flags)) ('nose2 From patchwork Thu Feb 27 14:27:38 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39386 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 6886327BBE9; Thu, 27 Feb 2025 14:39:29 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id A6EBC27BBE2 for ; Thu, 27 Feb 2025 14:39:27 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnf0o-0001gs-25; Thu, 27 Feb 2025 09:37:18 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnezp-0007t8-Pl for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:21 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnezp-00071F-G5 for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:17 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=YeIANVSLXxb9IK5wdLOlo0SwxzgrShvGeS+QXWg7HsI=; b=LWxQnjhYmPBGf80hAiJMBAz7yO3px9OdsNvKLui/NeluzRvpMogqkQzorInpvP75vG2o93kGO9LR1YrQmIAIvSNYVIb3RgFLtdZKLcP0OIN2ESd8NxIpn4f1SPca0uslMPYKtQEWiL3e3MOq4q7qOn3thiuWqqxrmGrA/UbRNlPTI/7HK8DuosX5JAaGUmGO/p12HbL/WHhCndH/ftuBXgX7mAUVKSd1ZriHZC49aQvkJ3sNsyybe6f4wxfI+ccn3mHlFfFumalX54CuiYEM4+KRiJ0fFKPdyygR9XnssfIN5dBxz3nz6/JK4TihjA6QD1l3YumwUkDkrsdALZbSFQ==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnezp-0001Lk-Ag for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:17 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 37/48] gnu: python-pixell: Update to 0.28.1. 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[source]: Switch to git-fetch. Add patch. [propagated-inputs]: Remove python-cython, python-coveralls. * gnu/packages/patches/python-pixell-avoid-dependency-propagation.patch New file. * gnu/local.mk: Add patch. --- gnu/local.mk | 1 + gnu/packages/astronomy.scm | 15 +++++++++------ ...on-pixell-avoid-dependency-propagation.patch | 17 +++++++++++++++++ 3 files changed, 27 insertions(+), 6 deletions(-) create mode 100644 gnu/packages/patches/python-pixell-avoid-dependency-propagation.patch diff --git a/gnu/local.mk b/gnu/local.mk index cd6c5d5483..dd187f571b 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -2006,6 +2006,7 @@ dist_patch_DATA = \ %D%/packages/patches/python-matplotlib-fix-legend-loc-best-test.patch \ %D%/packages/patches/python-random2-getrandbits-test.patch \ %D%/packages/patches/python-pillow-use-zlib-1.3.patch \ + %D%/packages/patches/python-pixell-avoid-dependency-propagation.patch \ %D%/packages/patches/python-pydocstyle-add-support-for-pep701.patch \ %D%/packages/patches/python-pyreadstat-link-libiconv.patch \ %D%/packages/patches/python-sip-include-dirs.patch \ diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 2cea636e1b..4804e74a81 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -3045,13 +3045,18 @@ (define-public python-mapsims (define-public python-pixell (package (name "python-pixell") - (version "0.28.0") + (version "0.28.1") (source (origin - (method url-fetch) - (uri (pypi-uri "pixell" version)) + (method git-fetch) + (uri (git-reference + (url "https://github.com/simonsobs/pixell") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 "11xd0ld329vr3spg5nzszn0bxzahnvkrh2akkd7qff33ndf75hkk")))) + (base32 "0p3pndy04n0hd352gjgwpqafp9sm1iq6c45pj745z1cswaf2lmc8")) + (patches (search-patches + "python-pixell-avoid-dependency-propagation.patch")))) (build-system pyproject-build-system) (native-inputs (list gfortran @@ -3062,8 +3067,6 @@ (define-public python-pixell python-pytest)) (propagated-inputs (list python-astropy - python-coveralls - python-cython ; check why it needs in installation python-dateutil python-ducc0 python-h5py diff --git a/gnu/packages/patches/python-pixell-avoid-dependency-propagation.patch b/gnu/packages/patches/python-pixell-avoid-dependency-propagation.patch new file mode 100644 index 0000000000..52c27bad6f --- /dev/null +++ b/gnu/packages/patches/python-pixell-avoid-dependency-propagation.patch @@ -0,0 +1,17 @@ +--- a/pyproject.toml ++++ b/pyproject.toml +@@ -22,14 +22,10 @@ + 'h5py>=2.7', + 'scipy>=1.0', + 'python_dateutil>=2.7', +- 'cython', + 'healpy>=1.13', + 'matplotlib>=2.0', + 'pyyaml>=5.0', + 'Pillow>=5.3.0, != 10.4.0', +- 'pytest-cov>=2.6', +- 'coveralls>=1.5', +- 'pytest>=4.6', + 'ducc0>=0.36.0', + 'numba>=0.54.0' + ] From patchwork Thu Feb 27 14:27:39 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39393 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 1C00F27BBE2; 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test wrapper for other environments "codecov" "coverage" ; coverage "black" "isort" "pycodestyle" "pep8" ; style - "pyflakes" "flake8" "pylint" "mypy" ; style+lint + "check-manifest" "pyflakes" "flake8" "pylint" "mypy" ; style+lint "coveralls" "twine" ; upload integration tools "pytest-isort" "pytest-flake8" "pytest-cov" "pytest-black" "pytest-pep8" "pytest-mypy" "pytest-pep8" "pre-commit")) ; variants From patchwork Thu Feb 27 14:27:40 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39398 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id C631B27BBEB; Thu, 27 Feb 2025 14:41:03 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id A612B27BBE2 for ; 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gnu/packages/python-science.scm | 1 - gnu/packages/python-web.scm | 4 +--- gnu/packages/python-xyz.scm | 15 ++++----------- gnu/packages/shells.scm | 1 - gnu/packages/web.scm | 1 - 7 files changed, 6 insertions(+), 19 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4d4ec7015b..dd33eee8d8 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7719,7 +7719,7 @@ (define-public python-illumina-utils (build-system pyproject-build-system) (arguments (list #:tests? #false)) ;there are none (propagated-inputs (list python-matplotlib python-numpy python-levenshtein)) - (native-inputs (list python-setuptools python-wheel python-pip)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/meren/illumina-utils") (synopsis "Library and scripts to work with Illumina paired-end data") (description diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index 83363cfedd..ca50dd1bfc 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -5795,7 +5795,6 @@ (define-public datasette (list nss-certs-for-test python-beautifulsoup4 python-cogapp - python-pip python-pytest python-pytest-asyncio python-pytest-runner diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 80aa14e166..6b7672a816 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -551,7 +551,6 @@ (define-public python-scikit-build-core python-hatch-vcs python-hatchling python-numpy - python-pip python-pypa-build python-pytest python-pytest-subprocess diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 0d343e79e3..6484c5290d 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -2029,7 +2029,6 @@ (define-public httpie python-defusedxml python-importlib-metadata python-multidict - python-pip python-pygments python-requests python-requests-toolbelt @@ -4475,8 +4474,7 @@ (define-public python-requests python-idna python-urllib3)) (native-inputs - (list python-pip - python-pytest + (list python-pytest python-pytest-mock python-setuptools python-wheel)) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 84b1e01cb5..5a3f523899 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -5752,8 +5752,7 @@ (define-public python-extension-helpers python-setuptools-scm python-tomli python-setuptools - python-wheel - python-pip)) + python-wheel)) (home-page "https://extension-helpers.readthedocs.io") (synopsis "Astropy ecosystem utilities for building and installing packages") (description @@ -19504,8 +19503,7 @@ (define-public python-argparse-manpage "1nq4sq1zk1xzdsqq61hd27jhj978ys136aba1zjg02x1g0c0cg11")))) (build-system pyproject-build-system) (native-inputs - (list python-pip python-pytest python-setuptools python-tomli - python-wheel)) + (list python-pytest python-setuptools python-tomli python-wheel)) (home-page "https://github.com/praiskup/argparse-manpage") (synopsis "Build manual page from Python's ArgumentParser object") (description @@ -23002,7 +23000,6 @@ (define-public poetry python-keyring python-packaging python-pexpect - python-pip python-pkginfo python-platformdirs python-poetry-core @@ -23325,8 +23322,7 @@ (define-public python-lazy-object-proxy (base32 "0sdc92bbzy6slcl432j04mr131cy8n0many26ppm4fpl8mnpn93q")))) (build-system pyproject-build-system) (native-inputs - (list python-pip - python-setuptools + (list python-setuptools python-setuptools-scm python-wheel)) (home-page "https://github.com/ionelmc/python-lazy-object-proxy") @@ -25941,7 +25937,6 @@ (define-public python-isort python-hypothesmith python-libcst-minimal python-natsort - python-pip python-poetry-core python-pylama python-pypa-build @@ -26671,8 +26666,7 @@ (define-public python-rfc3986-validator (base32 "0mfh82r37ma5n54n8ibnqvmwr3j3f2ixqfjfmv1rwfqvjbkvsi1x")))) (build-system pyproject-build-system) (native-inputs - (list python-pip - python-pytest + (list python-pytest python-pytest-runner python-rfc3987 python-setuptools @@ -34359,7 +34353,6 @@ (define-public python-pypandoc (list (texlive-updmap.cfg (list texlive-xpatch texlive-lm texlive-xcolor)) - python-pip python-poetry-core python-setuptools)) (inputs (list pandoc python-pandocfilters)) diff --git a/gnu/packages/shells.scm b/gnu/packages/shells.scm index 6f830d54aa..7763c2729b 100644 --- a/gnu/packages/shells.scm +++ b/gnu/packages/shells.scm @@ -620,7 +620,6 @@ (define-public xonsh (setenv "HOME" "/tmp")))))) (native-inputs (list git-minimal - python-pip python-pyte python-pytest python-pytest-mock diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm index 15fc5047d9..a38fc46bdb 100644 --- a/gnu/packages/web.scm +++ b/gnu/packages/web.scm @@ -5262,7 +5262,6 @@ (define-public python-lambda-4dn (list python-boto3 python-botocore python-docutils - python-pip python-six python-virtualenv)) (home-page "https://github.com/4dn-dcic/python-lambda") From patchwork Thu Feb 27 14:27:43 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39388 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id C803227BBE9; Thu, 27 Feb 2025 14:39:54 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D9C3927BBE2 for ; Thu, 27 Feb 2025 14:39:53 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnf0y-0002EN-3D; Thu, 27 Feb 2025 09:37:28 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnezv-0007ux-Qb for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:24 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnezs-00071k-VZ for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:21 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=g9jgWTGI85IsNkt+SAObK3VBGP3hyb7HORykSXQHv4A=; b=MJKVW7pHUn8pwCu8gQvWdWEvWrBIsVYF+mbOlPbX/gnRny5D9Vx454193JEXUGsPvVKiDR/Sody8HQ/qiZ1hz6PQ2Y53Ihl6Turn/elbtkFITwWpR1pihcYcoC0FFNlDu7nQg/YiM1xdBtkWz7CJb8XkctWp1Sh6ygLWPkYbwl9RIMh07TR/sriy7IZq1FPPFth9w3j3cnFUDVLFw+SyJUQ9p8Yh0xxdKvdcFiL6BXpLn7feWfkevVbd3nU2p+ME6isM9EzCSzJjfqRg+YO12kws+xXyiWhIjKef7iC0aMt6c9EB9zk2gyOiwp4aWXFyazo88PVj5TfWNwr0HBjVZw==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnezs-0001Ma-OZ for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:20 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 42/48] build-system/pyproject: Remove python-pre-commit native-input. 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This package provides the `jupyter` binary and thus also exports the From patchwork Thu Feb 27 14:27:44 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39369 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id F221A27BBE9; Thu, 27 Feb 2025 14:37:19 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id CF81827BBE2 for ; Thu, 27 Feb 2025 14:37:19 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnf0K-0000VN-CG; 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These can be removed after . - python-pypa-build python-pip)) + (list openldap python-wheel python-setuptools-scm python-toml)) (propagated-inputs (list python-django python-ldap)) (home-page "https://github.com/django-auth-ldap/django-auth-ldap") From patchwork Thu Feb 27 14:27:45 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39392 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 513E627BBE2; Thu, 27 Feb 2025 14:40:37 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,TVD_SPACE_RATIO,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id AA2C127BBE9 for ; 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[arguments]: Remove field. --- gnu/packages/python-xyz.scm | 10 ---------- 1 file changed, 10 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index a9f04d2886..58dcb3c896 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -1837,18 +1837,8 @@ (define-public python-docstring-to-markdown (sha256 (base32 "0gdpabnyl1kyy0cjrnph6xl4fyhgim50a1amsaqq3hahki6i2ip1")))) (build-system pyproject-build-system) - (arguments - (list - #:phases - #~(modify-phases %standard-phases - (add-after 'unpack 'reduce-test-coverage-since-failing - (lambda _ - (substitute* "setup.cfg" - (("(^.*cov.*$|^.*flake8.*$)") ""))))))) (native-inputs (list python-pytest - python-pytest-cov - python-pytest-flake8 python-setuptools python-wheel)) (home-page "https://github.com/python-lsp/docstring-to-markdown") From patchwork Thu Feb 27 14:27:46 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39378 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 2EEB427BBEA; Thu, 27 Feb 2025 14:38:13 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id B373627BBE2 for ; Thu, 27 Feb 2025 14:38:12 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnf1U-0003HU-RD; Thu, 27 Feb 2025 09:38:01 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnezx-0007vy-6f for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:25 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tnezw-000721-57 for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:24 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=BuoBr/IcSRJnhB7b7xQ46VLUdKW9aG1sytyILazKTfc=; b=EOhZWerl3hvrLRvH/2JGKLI0j+ovrcStXgz+6eRgT3tI53/QfNoDeI0iO4RWFED9op+oeCIU2oSn2uvm3YsWcizL+M8OFFwFjliM3KPGB7AV5H1LaoKzSWRauSgsn0SAOKimYKUNcqFSaLridXEp5Ml2ZL+yh2TljWNhktR/WMvSnpuLCUOfPk1h38fucjss032JE1q2+IIBsTTx6TLaaCo5SICUG3OT51WEpNGDTidd3+0VUH8q1y6xrsCI1UvLzdpvlfqgdtzwyUPq7QEIsXsGWTFaWGWHvDjF+DQb9hT5B5MqtL3gVrQy8KT/WRGRtCm4JZ7SFGv0zoPfasUhPg==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tnezv-0001N6-UN for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:23 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 45/48] gnu: python-translation-finder: Remove python coverage native-inputs. 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[native-inputs]: Remove python-pytest-mypy-plugins. --- gnu/packages/python-xyz.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 58dcb3c896..2537b9a63c 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -35072,11 +35072,12 @@ (define-public python-loguru #~(list"--numprocesses" (number->string (parallel-job-count)) ;; All of these fail with: error: Cannot find implementation or ;; library stub for module named "loguru" - "--ignore=tests/typesafety/test_logger.yml"))) + "--ignore=tests/typesafety/test_logger.yml" + ;; Removes mypy dependency + "--ignore=tests/test_type_hinting.py"))) (native-inputs (list python-freezegun python-pytest - python-pytest-mypy-plugins python-pytest-xdist python-setuptools python-wheel)) From patchwork Thu Feb 27 14:27:49 2025 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Nicolas Graves X-Patchwork-Id: 39379 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id BBA7B27BBEB; Thu, 27 Feb 2025 14:38:13 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-7.4 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_DNSWL_BLOCKED,RCVD_IN_MSPIKE_H2, RCVD_IN_VALIDITY_CERTIFIED,RCVD_IN_VALIDITY_RPBL,RCVD_IN_VALIDITY_SAFE, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 9052C27BBE2 for ; Thu, 27 Feb 2025 14:38:13 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tnf0h-00012d-Lw; Thu, 27 Feb 2025 09:37:11 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tnezf-0007d3-7h for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:08 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tneze-0006zH-S7 for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:06 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=G8kPpViG+Qg3CkGJNyBf+WGS3hhdalT5Dq9DnkvvUwA=; b=GdjnVrNvksTdumI7bmzt7FDIw4tidbGgzMU8MmCFpWBuk90HLYcnLYCDtLSyFQcLQOWeIoHTLdWzeqRulobNWCww8lmQWOwPaLMbFYkdo1Lpv/Zm/kPZcmON9HhwUCf/rlrbQtuJHvoCYnFz9WlmE8SZxHFNiB1EkqeLORwWmtPCKhuuK8/EhcnxbS514lnF0bh3GqUALF6uysc7ZgyP/S1Ys8dEYVvvICeR/0B1C2s+Pr49arN28Pp0ES4DeV0AWOF7KFFX8rvDWd3fbAIiSKv2yc7br9wgMFvCFf2Z0rSTzgCpS6boHRjHMa4ePS0fo/2ru3epC9vZ/8llzwoEjA==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tneze-0001J6-KW for guix-patches@gnu.org; Thu, 27 Feb 2025 09:36:06 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#70858] [PATCH v5 48/48] gnu: gunicorn: Migrate 'check phase to pyproject-build-system. 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#:allow-other-keys) - (if tests? - (begin - (invoke "pytest" "-vv" - ;; Disable the geventlet tests because eventlet uses - ;; dnspython, which does not work in the build - ;; container due to lack of /etc/resolv.conf, etc. - "--ignore=tests/workers/test_geventlet.py")) - (format #t "test suite not run~%")))) (add-after 'install 'install-doc (lambda* (#:key outputs #:allow-other-keys) (let* ((doc (string-append (assoc-ref outputs "doc")