From patchwork Mon Dec 5 17:27:24 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 45059 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id BE6BD27BBEB; Mon, 5 Dec 2022 17:28:27 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D803327BBE9 for ; Mon, 5 Dec 2022 17:28:25 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1p2FG8-0006ek-Ao; Mon, 05 Dec 2022 12:28:04 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1p2FG7-0006eL-5a for guix-patches@gnu.org; Mon, 05 Dec 2022 12:28:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1p2FG6-0006Yr-OH for guix-patches@gnu.org; Mon, 05 Dec 2022 12:28:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1p2FG6-0007xQ-Gg; Mon, 05 Dec 2022 12:28:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#59840] [PATCH 1/3] gnu: Add r-clustercrit. References: <47083f7d4810490c98e4e43cf814cbbd@mdc-berlin.de> In-Reply-To: <47083f7d4810490c98e4e43cf814cbbd@mdc-berlin.de> Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 05 Dec 2022 17:28:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 59840 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <59840@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 59840-submit@debbugs.gnu.org id=B59840.167026126930562 (code B ref 59840); Mon, 05 Dec 2022 17:28:02 +0000 Received: (at 59840) by debbugs.gnu.org; 5 Dec 2022 17:27:49 +0000 Received: from localhost ([127.0.0.1]:37352 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1p2FFt-0007wo-Fz for submit@debbugs.gnu.org; Mon, 05 Dec 2022 12:27:49 -0500 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:41585) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1p2FFr-0007we-Hg for 59840@debbugs.gnu.org; Mon, 05 Dec 2022 12:27:48 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-transfer-encoding:content-type:content-type:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1670261261; x=1672075662; bh=pnF5r8+C2sz4IHk p2+LlV7aukStsUJk07NE3XywLe54=; b=E64FMflqkWfCI3OENPev1pkpHuXpTHr TWWS5HK14bdSh0UTkm0ElXYFZuVCJ7nUwp4tL6Mh186Z55tjCKAj53FqoXkkW68H 39EbiuvtcZLDLi210uDqSz1tN/2Xj/BVFB5rsm4DCmlXkwQq9KbQa+bVEZdL6AHi 2g3hCC1QBedg= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 1D7A4A0A06 for <59840@debbugs.gnu.org>; Mon, 5 Dec 2022 18:27:40 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.16; Mon, 5 Dec 2022 18:27:39 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 5 Dec 2022 18:27:24 +0100 Message-ID: <20221205172726.24426-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.1 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27306.001 X-TM-AS-Result: No-10--2.964800-5.000000 X-TMASE-MatchedRID: SzbEz7SZt2v/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6Kwi7MItzaY3kwFzTzcgzhNa0xBCUwuKSqbs +nJ/tFJGRPEc/KtTFdDxiUd80FbeHewNvikD9teHjpxdo/JwVm7+a+v4FF31uD2veI3/hwm9KfR F/WYdhbn0tCKdnhB581kTfEkyaZdz6C0ePs7A07ba607moR85Re5TDpi6o9jShqSlKmYuBw2v64 8/oXIW68q3HFul7F0p8Z3Zai6ZEmouFuicP6VDQeJBm5pRBu1qPGMHbOnhgxQ6Ec5R0o6uydAnz xkc/wOO+Yl/q6i1mnv1mO1iYLJDqT4cbBIKMuHq+68HqACCvKA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.964800-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27306.001 X-TM-SNTS-SMTP: EC814A43102204D8E44EC2A21EBFADC5CDBBB701BB6E7C55C5465AB8ADB7FE5E2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-clustercrit): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) base-commit: b2a848d23d37f31496e1ff664f1dcf6abcdcc388 diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5c5258d6e0..6c2b8c834b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14094,6 +14094,30 @@ (define-public r-npsurv exact and interval-censored observations.") (license license:gpl2+))) +(define-public r-clustercrit + (package + (name "r-clustercrit") + (version "1.2.8") + (source (origin + (method url-fetch) + (uri (cran-uri "clusterCrit" version)) + (sha256 + (base32 + "10pz1bikdbkm2ky3xnagp0qv60whalavp6j39b4p7d75jj5xcxgk")))) + (properties `((upstream-name . "clusterCrit"))) + (build-system r-build-system) + (native-inputs (list gfortran)) + (home-page "https://www.r-project.org/") + (synopsis "Computing clustering validation indices") + (description + "The @code{clusterCrit} package provides an implementation of the following +indices: Czekanowski-Dice, Folkes-Mallows, Hubert Γ, Jaccard, McNemar, Kulczynski, +Phi, Rand, Rogers-Tanimoto, Russel-Rao or Sokal-Sneath. ClusterCrit defines +several functions which compute internal quality indices or external comparison +indices. The partitions are specified as an integer vector giving the index of +the cluster each observation belongs to.") + (license license:gpl2+))) + (define-public r-clusteval (package (name "r-clusteval") From patchwork Mon Dec 5 17:27:25 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 45058 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 190F827BBEB; Mon, 5 Dec 2022 17:28:21 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id B0DC227BBE9 for ; Mon, 5 Dec 2022 17:28:18 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1p2FGB-0006fQ-3R; Mon, 05 Dec 2022 12:28:07 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1p2FG7-0006ec-Si for guix-patches@gnu.org; Mon, 05 Dec 2022 12:28:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1p2FG7-0006Z5-KU for guix-patches@gnu.org; Mon, 05 Dec 2022 12:28:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1p2FG7-0007xg-A1; Mon, 05 Dec 2022 12:28:03 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#59840] [PATCH 2/3] gnu: Add r-waffle. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 05 Dec 2022 17:28:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 59840 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <59840@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 59840-submit@debbugs.gnu.org id=B59840.167026127330582 (code B ref 59840); Mon, 05 Dec 2022 17:28:03 +0000 Received: (at 59840) by debbugs.gnu.org; 5 Dec 2022 17:27:53 +0000 Received: from localhost ([127.0.0.1]:37356 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1p2FFx-0007xC-7Y for submit@debbugs.gnu.org; Mon, 05 Dec 2022 12:27:53 -0500 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:53177) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1p2FFs-0007wf-9u for 59840@debbugs.gnu.org; Mon, 05 Dec 2022 12:27:52 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1670261262; x=1672075663; bh=iBMV/uGY/UxFuL9soHYjY/EuK9DPuJKguouTh61pBGc=; b=jYKxAJPkcVG9 gCOeg8wU7rRfvZHbXnvcjmtkuCAisuwuIT0OqvHcV5FmNS3cZWT45rKdK87boA3k 0Aj+Qbroy+r2UMcDbJRIVJyYsIskPfIk8VI6aQm7v20Za6xtTaBGPiLNFi3KLDtU 79CtZiyDNZbmFnlV5SKDwR1y/F1T9ow= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 2E347A0A6E for <59840@debbugs.gnu.org>; Mon, 5 Dec 2022 18:27:42 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.16; Mon, 5 Dec 2022 18:27:40 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 5 Dec 2022 18:27:25 +0100 Message-ID: <20221205172726.24426-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20221205172726.24426-1-madalinionel.patrascu@mdc-berlin.de> References: <20221205172726.24426-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27306.001 X-TM-AS-Result: No-10--6.398400-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEGPO zcFgcUr4EyNJQfCPniLuNT8xdcEnQwE+dA3RWUSvwLYk+NSxc5r4qCLIu0mtIGW3+x7WFoJlFfN /bCXGyd+GnoLnpi8KXg8QOYLR3rHt0D/GQPNih2XdCok3ibXlQeuLFZZYlisfHxPMjOKY7A8Lbi gRnpKlKTpcQTtiHDgWZOLLtT/+6SZPPnOwnMp617cK67UmrAQUz5VPRqMaurUuC4V1AOopog== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.398400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27306.001 X-TM-SNTS-SMTP: AB32E1E08C10055778C09F1C45E6EB55583D32FA3A0A32C56C7F13D12D7F61802002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-waffle): New variable. --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 6c2b8c834b..33c2a59d25 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -15146,6 +15146,35 @@ (define-public r-tm "This package provides a framework for text mining applications within R.") (license license:gpl3))) +(define-public r-waffle + (package + (name "r-waffle") + (version "0.7.0") + (source (origin + (method url-fetch) + (uri (cran-uri "waffle" version)) + (sha256 + (base32 + "1qjmai33p96cyavi9lgi6k30h6fj7db5sr569v9jf4kwx92c61df")))) + (properties `((upstream-name . "waffle"))) + (build-system r-build-system) + (propagated-inputs + (list r-extrafont + r-ggplot2 + r-gridextra + r-gtable + r-rcolorbrewer)) + (home-page "https://github.com/hrbrmstr/waffle/tree/cran") + (synopsis "Creating waffle chart visualizations in R") + (description + "This package creates square pie charts also known as waffle charts. These +can be used to communicate parts of a whole for categorical quantities. To emulate +the percentage view of a pie chart, a 10x10 grid should be used. In this way each +square is representing 1% of the total. @code{Waffle} provides tools to create +charts as well as stitch them together. Isotype pictograms can be made by using +glyphs.") + (license license:gpl2+))) + (define-public r-waveslim (package (name "r-waveslim") From patchwork Mon Dec 5 17:27:26 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 45060 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 7416F27BBEB; Mon, 5 Dec 2022 17:29:02 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id ACA9E27BBE9 for ; Mon, 5 Dec 2022 17:29:01 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1p2FG8-0006el-ML; Mon, 05 Dec 2022 12:28:04 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1p2FG7-0006eN-9P for guix-patches@gnu.org; Mon, 05 Dec 2022 12:28:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1p2FG7-0006Yw-0l for guix-patches@gnu.org; Mon, 05 Dec 2022 12:28:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1p2FG6-0007xY-Sj; Mon, 05 Dec 2022 12:28:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#59840] [PATCH 3/3] gnu: Add r-amplican. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 05 Dec 2022 17:28:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 59840 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <59840@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 59840-submit@debbugs.gnu.org id=B59840.167026127130570 (code B ref 59840); Mon, 05 Dec 2022 17:28:02 +0000 Received: (at 59840) by debbugs.gnu.org; 5 Dec 2022 17:27:51 +0000 Received: from localhost ([127.0.0.1]:37354 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1p2FFu-0007wz-Sz for submit@debbugs.gnu.org; Mon, 05 Dec 2022 12:27:51 -0500 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:55569) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1p2FFt-0007wg-19 for 59840@debbugs.gnu.org; Mon, 05 Dec 2022 12:27:49 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1670261262; x=1672075663; bh=221HpKp0RMkXV/oTcAk4cwKb0dVoL5c19kL8prtrci0=; b=C/+h33hbj4iC CktGvyi6nk1QqFqf7ezFJFMe5kyzIheEjOV67DlnzwPeRCjLcR4TMEVN7tSKsN4P Y5TzQhND9wjoGYBy+xwVBAudVzUfrymcs/PY/wdzU58AkHUaWDPNdDZSvzkceF7h mbstx2NxG0Frt382WIT2XMONfkyYj8s= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id E2A6CA0A95 for <59840@debbugs.gnu.org>; Mon, 5 Dec 2022 18:27:42 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.16; Mon, 5 Dec 2022 18:27:40 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 5 Dec 2022 18:27:26 +0100 Message-ID: <20221205172726.24426-3-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20221205172726.24426-1-madalinionel.patrascu@mdc-berlin.de> References: <20221205172726.24426-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27306.001 X-TM-AS-Result: No-10--7.202300-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCy5yK79j3pvlA5SzgJNSArLAQP +5JV1VlpyvWES1H1EtZ8sZoiSTmprXbwYQAJ0CYrdCok3ibXlQeuLFZZYlisfHxPMjOKY7A9qHX ONfTwSQsRB0bsfrpPIXzYxeQR1DvvlHWmTu8F+Mw4UmgER2XhqgThDrRNNCrg/2j/NVlWJAtYxF AbKgQ7V X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--7.202300-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27306.001 X-TM-SNTS-SMTP: 463FD1DD4374EE1EAA8BAD8884559647BFC7EB70084CA266334D6C3A9A4C78CA2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-amplican): New variable. --- gnu/packages/bioconductor.scm | 46 +++++++++++++++++++++++++++++++++++ 1 file changed, 46 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index c62c5970b8..7e92186505 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2178,6 +2178,52 @@ (define-public r-airpart datasets.") (license license:gpl2))) +(define-public r-amplican + (package + (name "r-amplican") + (version "1.20.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "amplican" version)) + (sha256 + (base32 + "1c990i6gxbarcpbdpkz017x94spwzap95l95synlizbkyif4z8ij")))) + (properties `((upstream-name . "amplican"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocgenerics + r-biocparallel + r-biostrings + r-clustercrit + r-data-table + r-dplyr + r-genomeinfodb + r-genomicranges + r-ggplot2 + r-ggthemes + r-gridextra + r-gtable + r-iranges + r-knitr + r-matrix + r-matrixstats + r-rcpp + r-rmarkdown + r-s4vectors + r-shortread + r-stringr + r-waffle)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/valenlab/amplican") + (synopsis "Automated analysis of CRISPR experiments") + (description + "The package performs alignment of the amplicon reads, normalizes gathered +data, calculates multiple statistics (e.g. cut rates, frameshifts) and presents +the results in the form of aggregated reports. Data and statistics can be broken +down by experiments, barcodes, user defined groups, guides and amplicons allowing +for quick identification of potential problems.") + (license license:gpl3))) + (define-public r-amountain (package (name "r-amountain")