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Change-Id: If51f3075037647e319efa9468331677a845b30cb --- gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) base-commit: 66a1a1fe22aff54973ab5c33957a338b33b8274c diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 34a39a48f1..f524b53bad 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2880,6 +2880,33 @@ (define-public python-metacells cells).") (license license:expat))) +(define-public python-ngesh + (package + (name "python-ngesh") + (version "1.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/tresoldi/ngesh") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "07sj4x95b5hvx57pw24f80sk4ag4hkg1z6wzym3pzi8n5gn85n1z")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-ete3 python-numpy python-six)) + (native-inputs (list python-black python-flake8 python-pytest python-twine + python-wheel)) + (home-page "https://github.com/tresoldi/ngesh") + (synopsis "Library for phylogenetic tree simulation") + (description + "Ngesh is a Python library and CLI tool for simulating phylogenetic trees and data. +It is intended for benchmarking phylogenetic methods, especially in historical +linguistics andstemmatology. The generation of stochastic phylogenetic trees +also goes by the name simulationmethods for phylogenetic trees, synthetic data +generation, or just phylogenetic tree simulation.") + (license license:expat))) + (define-public python-parabam (package (name "python-parabam")