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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 22 Aug 2022 11:01:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 57339 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 57339@debbugs.gnu.org Cc: rekado@elephly.net X-Debbugs-Original-To: X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by submit@debbugs.gnu.org id=B.166116601024937 (code B ref -1); Mon, 22 Aug 2022 11:01:02 +0000 Received: (at submit) by debbugs.gnu.org; 22 Aug 2022 11:00:10 +0000 Received: from localhost ([127.0.0.1]:38088 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oQ5A9-0006P1-2W for submit@debbugs.gnu.org; Mon, 22 Aug 2022 07:00:10 -0400 Received: from lists.gnu.org ([209.51.188.17]:34366) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oQ5A4-00067H-6W for submit@debbugs.gnu.org; Mon, 22 Aug 2022 07:00:07 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:60650) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oQ5A2-0003Y0-Se for guix-patches@gnu.org; Mon, 22 Aug 2022 07:00:03 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:53033) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oQ59z-0000qV-Vn for guix-patches@gnu.org; Mon, 22 Aug 2022 07:00:02 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1661165993; x=1662980394; bh=9Ww4C1uMFcBRhYL 4gUJdpt6tOWRa+XczuQoKSPaQQuA=; b=nf63BjwM6h54qbH+bbN7fd2rd2cisCi 35CggJIuqTmmYJLIaPnbvRiwgG7jg4NlGqMgkw81CyeEnQU0fDFqJL2T3doETd50 vAO7Lw3GlIVWehWzLAaR9QHMohb4F3hbJijwt3hnvip8NxovGsLs08UyWI5uDcqj eoF/9mnpysmE= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id A6557160239 for ; Mon, 22 Aug 2022 12:59:53 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.12; Mon, 22 Aug 2022 12:59:53 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 22 Aug 2022 12:59:41 +0200 Message-ID: <20220822105941.30972-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.37.2 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27092.007 X-TM-AS-Result: No-10--6.445700-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEF+2 MpmaGp/lRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v8XjfR3d0weRm1/OiWPM9c78ZC 684qc/JdL5SVR+U8Zdsign5HsLTCTw+spnTDuewPdCok3ibXlQeuLFZZYlisfHxPMjOKY7A8Lbi gRnpKlKTpcQTtiHDgWTevFo1Op6x4xy9kErf6Ln4FbokEwQnKAd0w0WxSgj/kOWgT9sintTA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.445700-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27092.007 X-TM-SNTS-SMTP: 2CAAC7642816B1D88349416FF34FD7C90CBEA45ECAC2B47962C97E3AA461007B2002:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-pcaexplorer): New variable. --- gnu/packages/bioconductor.scm | 55 +++++++++++++++++++++++++++++++++++ 1 file changed, 55 insertions(+) base-commit: 706b3ef38b2f7ce9f05aa56e2eaaaf1c19e25f90 diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7d2ca413e9..cfcad75001 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5049,6 +5049,61 @@ (define-public r-organismdbi the fact that each of these packages implements a select methods.") (license license:artistic2.0))) +(define-public r-pcaexplorer + (package + (name "r-pcaexplorer") + (version "2.22.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "pcaExplorer" version)) + (sha256 + (base32 + "0xkafpi6y5n8hljdaj183hd5z4ik7lpbklg2cbx1hwfz4n4hh1bl")))) + (properties `((upstream-name . "pcaExplorer"))) + (build-system r-build-system) + (propagated-inputs + (list r-annotationdbi + r-base64enc + r-biomart + r-deseq2 + r-dt + r-genefilter + r-genomicranges + r-ggplot2 + r-ggrepel + r-go-db + r-gostats + r-heatmaply + r-iranges + r-knitr + r-limma + r-nmf + r-pheatmap + r-plotly + r-plyr + r-rmarkdown + r-s4vectors + r-scales + r-shiny + r-shinyace + r-shinybs + r-shinydashboard + r-summarizedexperiment + r-threejs + r-tidyr + r-topgo)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/federicomarini/pcaExplorer") + (synopsis + "Interactive Visualization of RNA-seq Data Using a Principal Components Approach") + (description + "This package provides functionality for interactive visualization of RNA-seq +datasets based on Principal Components Analysis. The methods provided allow for +quick information extraction and effective data exploration. A Shiny +application encapsulates the whole analysis.") + (license license:expat))) + (define-public r-pcamethods (package (name "r-pcamethods")