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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 22 Aug 2022 10:34:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 57338 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 57338@debbugs.gnu.org Cc: rekado@elephly.net X-Debbugs-Original-To: X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by submit@debbugs.gnu.org id=B.166116443312036 (code B ref -1); Mon, 22 Aug 2022 10:34:02 +0000 Received: (at submit) by debbugs.gnu.org; 22 Aug 2022 10:33:53 +0000 Received: from localhost ([127.0.0.1]:38013 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oQ4kj-000384-9p for submit@debbugs.gnu.org; Mon, 22 Aug 2022 06:33:53 -0400 Received: from lists.gnu.org ([209.51.188.17]:54340) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oQ4kh-00037w-9w for submit@debbugs.gnu.org; Mon, 22 Aug 2022 06:33:52 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:44428) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oQ4kV-0006L0-J8 for guix-patches@gnu.org; Mon, 22 Aug 2022 06:33:48 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:49257) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oQ4kQ-0005FR-F9 for guix-patches@gnu.org; Mon, 22 Aug 2022 06:33:37 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1661164410; x=1662978811; bh=eFhqKpFCyVHXOt5 w7DEKOGDcZ+uZmRrdnDm2c8tJyCw=; b=EMV4zMAbOSzzgCPmqz5cKzaxjU2ygzN 0KCnDjswFdnyq7KeHu+ugyLuiWNM74Wy9Oi23bAIfZOn70sArDR0myN3mxqYoksl Ud/6yRZb8rt8KaHcd7Dy30qBTxPsieIV4G08snUl9kVyChEAxoOeG7UWttSGFYyu ZbCljaO17bRs= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id E4B8116034A for ; Mon, 22 Aug 2022 12:33:29 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.12; Mon, 22 Aug 2022 12:33:29 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 22 Aug 2022 12:33:19 +0200 Message-ID: <20220822103319.29907-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.37.2 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27092.007 X-TM-AS-Result: No-10--7.752300-5.000000 X-TMASE-MatchedRID: 54gb2yeIOXT/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCxSHjB5Y+o5ZHd17Y6gGqDCycO hvTXTlouSkIUZyUQUJxJTjjs9yT6Yo8WMkQWv6iUoTQl7wNH8Po2j49Ftap9Eymsk/wUE4hoZ/c xLmjjItxnNzYjZAjykEXjBEdecGhOkgHGPRDib2c301fLtnixf X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--7.752300-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27092.007 X-TM-SNTS-SMTP: 0EE6B762074D490F649C615DEAF7843B567925021EFA08571E311149DD32A26C2002:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-parathyroidse): New variable. --- gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) base-commit: 706b3ef38b2f7ce9f05aa56e2eaaaf1c19e25f90 diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7d2ca413e9..b4f880a080 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1541,6 +1541,30 @@ (define-public r-curatedtcgadata across the entire multi-'omics experiment.") (license license:artistic2.0))) +(define-public r-parathyroidse + (package + (name "r-parathyroidse") + (version "1.34.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "parathyroidSE" version + 'experiment)) + (sha256 + (base32 + "1h33x55c4gbzmh085skqif04wdcvjp2l9fm55qzwws27kwd30c16")))) + (properties `((upstream-name . "parathyroidSE"))) + (build-system r-build-system) + (propagated-inputs (list r-summarizedexperiment)) + (home-page "https://bioconductor.org/packages/parathyroidSE") + (synopsis "RangedSummarizedExperiment for RNA-Seq of parathyroid tumors") + (description + "This package provides @code{RangedSummarizedExperiment} objects of read +counts in genes and exonic parts for paired-end RNA-Seq data from experiments on +primary cultures of parathyroid tumors. The sequencing was performed on tumor +cultures from 4 patients at 2 time points over 3 conditions (DPN, OHT and control).") + ;; The author(s) mentions only LGPL without any specific version. + (license license:lgpl2.1+))) + (define-public r-tcgabiolinksgui-data (package (name "r-tcgabiolinksgui-data")