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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Wed, 03 Aug 2022 12:50:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 56950 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 56950@debbugs.gnu.org Cc: rekado@elephly.net X-Debbugs-Original-To: X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by submit@debbugs.gnu.org id=B.16595309912563 (code B ref -1); Wed, 03 Aug 2022 12:50:01 +0000 Received: (at submit) by debbugs.gnu.org; 3 Aug 2022 12:49:51 +0000 Received: from localhost ([127.0.0.1]:46850 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oJDot-0000fG-GA for submit@debbugs.gnu.org; Wed, 03 Aug 2022 08:49:51 -0400 Received: from lists.gnu.org ([209.51.188.17]:54652) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oJDop-0000f6-FP for submit@debbugs.gnu.org; Wed, 03 Aug 2022 08:49:49 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:41104) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oJDop-0003s8-7I for guix-patches@gnu.org; Wed, 03 Aug 2022 08:49:47 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:33077) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oJDom-0006It-9E for guix-patches@gnu.org; Wed, 03 Aug 2022 08:49:46 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1659530972; x=1661345373; bh=8NDc3sBpZc2xlDz iL8cxz6FmQLMvVQDDXK9h+uGVY5U=; b=HkF0mFM7k9+ML3C/R3L3f2Je7PbTwk0 JuRx2VIb4HdLMFJ8wpAtvKOF1GAxl309sJJ6tD1KsJnOT2W7YXfy+yyxHIDNbL+c HNDeqCb4TgJn7VF1cKkhJMWklt/xg+6xpUaxXIyfrKG6ZIpIQKiD1ov/ylP4NcEV phgDyNTovxDI= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id F411430036E for ; Wed, 3 Aug 2022 14:49:31 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Wed, 3 Aug 2022 14:49:31 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Wed, 3 Aug 2022 14:49:19 +0200 Message-ID: <20220803124919.7992-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.37.1 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27054.007 X-TM-AS-Result: No-10--3.022600-5.000000 X-TMASE-MatchedRID: SzbEz7SZt2v/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCxSHjB5Y+o5ZDoUdFbHYUawY2k BmAPfHzOC/cGE7/ouQMNNmRo2tcL/Kz8U6m7mv8DGL//8mlodA0LixrsCJ1jTlCkt7JatNPWeAi CmPx4NwGmRqNBHmBveVDC1CbuJXmMqtq5d3cxkNRqXnrxrKCOX8GXqslKsy8qTZdNQvAocHiM6c pZI6dw0iI+TSykK4W8+knGswRGgc1rEu3gbI1DzNQI2yNaNCCTgteOHE9Pc8+IYX5UR7gKtDUEk BTZ8vOLxlyTCXQR4xioA5PA4dQuxuYpJR2kheXd+3BndfXUhXQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.022600-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27054.007 X-TM-SNTS-SMTP: 90279682A20BA712B0065C9400F5008D16F608B633F616573227498B2245CC8E2002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-phylotools): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) base-commit: c4e58c119d637ef434c4b52437f677dfb69eb091 diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 094dd4e449..e90a4a9b08 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1376,6 +1376,29 @@ (define-public r-pheatmap control over dimensions and appearance.") (license license:gpl2+))) +(define-public r-phylotools + (package + (name "r-phylotools") + (version "0.2.2") + (source (origin + (method url-fetch) + (uri (cran-uri "phylotools" version)) + (sha256 + (base32 + "1dhk1ncp5zi4zl1xfnjz64v983dm7bq7iimfjin80j0bdcpps44w")))) + (properties `((upstream-name . "phylotools"))) + (build-system r-build-system) + (propagated-inputs (list r-ape)) + (home-page "https://github.com/helixcn/phylotools") + (synopsis "Phylogenetic tools for eco-phylogenetics") + (description + "This package @code{phylotool} provides a collection of tools for building +@dfn{RAxML} (Randomized Axelerated Maximum Likelihood) supermatrix using +@code{PHYLIP} or aligned @code{FASTA} files. These functions will be useful for +building large dfn{phylogenies} (history of the evolution of a species or group) +using multiple markers.") + (license license:gpl2))) + (define-public r-pnwcolors (package (name "r-pnwcolors")