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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 27 Jun 2022 22:43:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 56270 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 56270@debbugs.gnu.org X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.165636975718140 (code B ref -1); Mon, 27 Jun 2022 22:43:02 +0000 Received: (at submit) by debbugs.gnu.org; 27 Jun 2022 22:42:37 +0000 Received: from localhost ([127.0.0.1]:53561 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o5xRE-0004iW-US for submit@debbugs.gnu.org; Mon, 27 Jun 2022 18:42:37 -0400 Received: from lists.gnu.org ([209.51.188.17]:58998) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o5xRA-0004iL-6r for submit@debbugs.gnu.org; Mon, 27 Jun 2022 18:42:36 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:45284) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o5xR9-0002Dh-Up for guix-patches@gnu.org; Mon, 27 Jun 2022 18:42:31 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:57113) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o5xR7-0007vZ-Jq for guix-patches@gnu.org; Mon, 27 Jun 2022 18:42:31 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id AF08B3003AE for ; Tue, 28 Jun 2022 00:42:26 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1656369746; x=1658184147; bh=jA9DX4HgaQ/IinzxUYEQ0YdJSEVTQ+WMJGX9uLys6oI=; b=Jo0ZjBQldMq0 OC2gCe42pLXy8wy/En9MZ8TqYM6S2l9jt/TJk740Ri+oIucXpQK/A1kIJ0mpzfhd PopGk0RfM6SanRxROc19dFYY8gOTdT8HXx4OQTYKQaGeusqyMKaRyweg0bUD/lcb GITDDQ1G+sHuxH5f7paMbmLBjuB3M0w= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id O4dH_24YJbgg for ; Tue, 28 Jun 2022 00:42:26 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Tue, 28 Jun 2022 00:42:25 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Tue, 28 Jun 2022 00:42:25 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Tue, 28 Jun 2022 00:42:13 +0200 Message-ID: <20220627224213.23031-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26982.003 X-TM-AS-Result: No-10--6.695600-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkrhPNSdY0/OGdR1HJpsacenVTWWiNp+v+FKA8awH3TXqY5ZGw7wyeH+fA vi4UZBM9TTe82NSPvvsign5HsLTCTuJXEeLLJ6+yrm7DrUlmNkIAy6p60ZV62fJ5/bZ6npdjKay T/BQTiGvAxRSAc0OENCyjC/fOp55Z13UN/zS7dV87UZgW14m6KhO1sh2WfxMOrYT8LTrJDO3Mqn AaiD0qJ X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.695600-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26982.003 X-TM-SNTS-SMTP: 8EE102EDDEA070B3D91B9C4D7C2323D35526D188EF4FA7EBEA4249024A7B28F02002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-banocc): New variable. --- gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..61ce070559 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,34 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-banocc + (package + (name "r-banocc") + (version "1.20.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "banocc" version)) + (sha256 + (base32 + "10vaggq1w5jkxd8r2k1mhymzvb7x3h8afwn2pvmcpj022ka7xhbx")))) + (properties `((upstream-name . "banocc"))) + (build-system r-build-system) + (propagated-inputs + (list r-coda + r-mvtnorm + r-rstan + r-stringr)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/banocc") + (synopsis "Bayesian analysis of compositional covariance") + (description + "@code{BAnOCC} is a package designed for compositional data, where each +sample sums to one. It infers the approximate covariance of the unconstrained +data using a Bayesian model coded with @code{rstan}. It provides as output the +@code{stanfit} object as well as posterior median and credible interval estimates +for each correlation element.") + (license license:expat))) + (define-public r-biocversion (package (name "r-biocversion")