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envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-badregionfinder): New variable. --- gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..aa4ba4706d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,34 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-badregionfinder + (package + (name "r-badregionfinder") + (version "1.24.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "BadRegionFinder" version)) + (sha256 + (base32 + "1a1pqmh5ak9s3k1lxw6flanchk24zyznwm34ixi2b78wdc3hqgm9")))) + (properties `((upstream-name . "BadRegionFinder"))) + (build-system r-build-system) + (propagated-inputs + (list r-biomart + r-genomicranges + r-rsamtools + r-s4vectors + r-variantannotation)) + (home-page "https://bioconductor.org/packages/BadRegionFinder") + (synopsis "Identifying regions with bad coverage in sequence alignment data") + (description + "@code{BadRegionFinder} is a package for identifying regions with a bad, +acceptable and good coverage in sequence alignment data available as bam files. +The whole genome may be considered as well as a set of target regions. Various +visual and textual types of output are available.") + (license license:lgpl3))) + + (define-public r-biocversion (package (name "r-biocversion")