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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 27 Jun 2022 21:29:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 56266 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 56266@debbugs.gnu.org X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.165636533027072 (code B ref -1); Mon, 27 Jun 2022 21:29:02 +0000 Received: (at submit) by debbugs.gnu.org; 27 Jun 2022 21:28:50 +0000 Received: from localhost ([127.0.0.1]:53475 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o5wHq-00072a-E4 for submit@debbugs.gnu.org; Mon, 27 Jun 2022 17:28:50 -0400 Received: from lists.gnu.org ([209.51.188.17]:42342) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o5wHp-00072S-3V for submit@debbugs.gnu.org; Mon, 27 Jun 2022 17:28:49 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:60752) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o5wHm-00019o-Kg for guix-patches@gnu.org; Mon, 27 Jun 2022 17:28:48 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:60923) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o5wHk-0005eq-0T for guix-patches@gnu.org; Mon, 27 Jun 2022 17:28:45 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id E99843002C7 for ; Mon, 27 Jun 2022 23:28:40 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1656365320; x=1658179721; bh=BxNr+KTzXBsqxXx21YMnwcU5cl1va5bhexaBpKAAz+M=; b=ou6qpYY7MEJm JP5+p/lxPemTNo4TGIhg4BX352aGsXlPxo776CkrBuku4eZqFEhMxpepS2s79/gX 6MytW8Ol8Z1tKNGsGlb8Ct9e4Nyx6BFnBNgPsLn4TaFKMfCXDwjU6kx0DBFrFKdo j+m8DFqozn7Qsf6Z02Qf5Vur4qxUW1I= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id dA2Mg0ySf2GT for ; Mon, 27 Jun 2022 23:28:40 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Mon, 27 Jun 2022 23:28:40 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Mon, 27 Jun 2022 23:28:39 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 27 Jun 2022 23:28:24 +0200 Message-ID: <20220627212824.18326-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26982.003 X-TM-AS-Result: No-10--8.545600-5.000000 X-TMASE-MatchedRID: 2wfub8HDRfP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6exkwFf3TGaYXjfR3d0weRpLCQ5HvInw54dJ viayscex0s01ndzUgTivasloTmbDvWi8Qip68NgfdCok3ibXlQeuLFZZYlisfHxPMjOKY7A8Lbi gRnpKlKXb6cSLExxx2kU6UkIr/V+1OD8XxIk2EK3wlmF9TvN9Yjv1NuPYvFmRN/KX/AzUcdMfI9 PFK5huqCHpFGFDyq7c= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--8.545600-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26982.003 X-TM-SNTS-SMTP: 57A536D7A96133E2797CC5E3F0997B630E34F67BE8B52DB09BD3E386F5F9C04A2002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-bader): New variable. --- gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..6d65cc1c1f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,30 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-bader + (package + (name "r-bader") + (version "1.34.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "BADER" version)) + (sha256 + (base32 + "0i5x1r2ns1hxhqk5jyfqird81hck1hllvvgx5bn0rb5vl99g8spm")))) + (properties `((upstream-name . "BADER"))) + (build-system r-build-system) + (home-page "https://bioconductor.org/packages/BADER") + (synopsis + "Bayesian analysis of differential expression in RNA sequencing data") + (description + "The @code{BADER} package is intended for the analysis of RNA sequencing +data. The algorithm fits a Bayesian hierarchical model for RNA sequencing count +data. @code{BADER} returns the posterior probability of differential expression +for each gene between two groups A and B. The joint posterior distribution of +the variables in the model can be returned in the form of posterior samples, +which can be used for further down-stream analyses such as gene set enrichment.") + (license license:gpl2))) + (define-public r-biocversion (package (name "r-biocversion")