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envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-asset): New variable. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9 diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..98e7ee104d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,32 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-asset + (package + (name "r-asset") + (version "2.14.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ASSET" version)) + (sha256 + (base32 + "029acl5k9d4hnvy3jia9cr4rk6w31zn8b5s79i6lazq1cp236hbg")))) + (properties `((upstream-name . "ASSET"))) + (build-system r-build-system) + (propagated-inputs (list r-mass r-msm r-rmeta)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/ASSET") + (synopsis + "Subset-based association analysis of heterogeneous traits and subtypes") + (description + "This package is an @code{R} programme for the subset-based analysis of +heterogeneous traits and disease subtypes. @code{ASSET} allows the user to +search through all possible subsets of z-scores to identify the subset of traits +giving the best meta-analyzed z-score. Further, it returns a p-value adjusting +for the multiple-testing involved in the search. It also allows for searching +for the best combination of disease subtypes associated with each variant.") + (license license:gpl2))) + (define-public r-biocversion (package (name "r-biocversion")