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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 22 Jun 2022 14:47:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 56147 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 56147@debbugs.gnu.org X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.165590919612252 (code B ref -1); Wed, 22 Jun 2022 14:47:02 +0000 Received: (at submit) by debbugs.gnu.org; 22 Jun 2022 14:46:36 +0000 Received: from localhost ([127.0.0.1]:36276 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o41cp-0003BX-UK for submit@debbugs.gnu.org; Wed, 22 Jun 2022 10:46:36 -0400 Received: from lists.gnu.org ([209.51.188.17]:36220) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o41cl-0003BB-Kg for submit@debbugs.gnu.org; Wed, 22 Jun 2022 10:46:34 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:35562) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o41cl-0003bJ-3X for guix-patches@gnu.org; Wed, 22 Jun 2022 10:46:31 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:36277) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o41ci-0000Zq-Fr for guix-patches@gnu.org; Wed, 22 Jun 2022 10:46:30 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id 87EBD3001FD for ; Wed, 22 Jun 2022 16:46:24 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1655909183; x=1657723584; bh=KZ4F7hBDWFArzYb6hqWlKkP0ueVcB+nHVCV6ISLbiXc=; b=eWHA+lZ/oxQS A5v7xcwsJpj+7n/cPi5gi1X98MK1LcOOGTb6eOLeJFVPYiTmOkRXaOTDHlk0OxE4 64SUg63q4yiF+b9sbIe19XIYbo9S6w12eSVGgMVPgCU4ycXGnsjMU3VSm8XrPFdM jjFSR18BLZOQul30s8dltpxagxgt8IQ= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id 8xcqIFheCrPb for ; Wed, 22 Jun 2022 16:46:23 +0200 (CEST) Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Wed, 22 Jun 2022 16:46:23 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Wed, 22 Jun 2022 16:46:23 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Wed, 22 Jun 2022 16:46:12 +0200 Message-ID: <20220622144612.19605-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26970.005 X-TM-AS-Result: No-10--7.739600-5.000000 X-TMASE-MatchedRID: GQw6Xh/XS6X/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCyx26XFXSTphShYTvQxSQq0foR 6iGzRJIA8rKRlKdbyf85/HnrJ5Wet+QBNy99xduuxaW0fY4IMuPNYQxCOihTN64sf0Egj7iqsqx rFSI3/KRfSNx4Mm0chfpXHFYWCQdejxYyRBa/qJcFwgTvxipFa9xS3mVzWUuCgZHIBpyeFpowD+ XkID5BGvFodVF6HTGodCr3+fXOKZ0XSEGdG9HhkftwZ3X11IV0= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--7.739600-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26970.005 X-TM-SNTS-SMTP: FA3830F55557A27E21B5B9202FE5EDE39AF06D943566E36BEA1C3BA6F21B45472002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-aspli): New variable. --- gnu/packages/bioconductor.scm | 48 +++++++++++++++++++++++++++++++++++ 1 file changed, 48 insertions(+) base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9 diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..0136d268b3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,54 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-aspli + (package + (name "r-aspli") + (version "2.6.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ASpli" version)) + (sha256 + (base32 + "1frlcwa8m4imfx6ncav8r8yskyaf4ibha177mfnp9y84w6mphynz")))) + (properties `((upstream-name . "ASpli"))) + (build-system r-build-system) + (propagated-inputs + (list r-annotationdbi + r-biocgenerics + r-biocstyle + r-data-table + r-dt + r-edger + r-genomicalignments + r-genomicfeatures + r-genomicranges + r-gviz + r-htmltools + r-igraph + r-iranges + r-limma + r-mass + r-pbmcapply + r-rsamtools + r-s4vectors + r-tidyr + r-upsetr)) + (home-page "https://bioconductor.org/packages/ASpli") + (synopsis "Analysis of alternative splicing using RNA-Seq") + (description + "@dfn{AS} (alternative splicing) is a common mechanism of post-transcriptional +gene regulation in eukaryotic organisms that expands the functional and regulatory +diversity of a single gene by generating multiple mRNA isoforms that encode +structurally and functionally distinct proteins. @code{ASpli} is an integrative +pipeline and user-friendly @code{R} package that facilitates the analysis of changes +in both annotated and novel AS events. @code{ASpli} integrates several independent +signals in order to deal with the complexity that might arise in splicing +patterns.") + ;; The authors didn't specify any GPL version in description or in the + ;; sources. + (license (list license:gpl2+ license:gpl3+)))) + (define-public r-biocversion (package (name "r-biocversion")