From patchwork Fri Jun 17 14:24:15 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 40087 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 7D89127BBEA; Fri, 17 Jun 2022 15:25:22 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 157C627BBE9 for ; Fri, 17 Jun 2022 15:25:22 +0100 (BST) Received: from localhost ([::1]:47698 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1o2CuX-0000Fx-3R for patchwork@mira.cbaines.net; Fri, 17 Jun 2022 10:25:21 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:58346) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o2CuF-0008Tq-FA for guix-patches@gnu.org; Fri, 17 Jun 2022 10:25:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:52659) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1o2CuF-0005jp-5b for guix-patches@gnu.org; Fri, 17 Jun 2022 10:25:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1o2CuE-000581-4s; Fri, 17 Jun 2022 10:25:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#56040] [PATCH] gnu: Add r-antiprofiles. 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(license license:artistic2.0))) +(define-public r-antiprofiles + (package + (name "r-antiprofiles") + (version "1.36.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "antiProfiles" version)) + (sha256 + (base32 + "1277kg5xpyb2yriyjy18p437q5lj22h4al7z7pygkzxzywxv9g40")))) + (properties `((upstream-name . "antiProfiles"))) + (build-system r-build-system) + (propagated-inputs + (list r-locfit + r-matrixstats)) + (home-page "https://github.com/HCBravoLab/antiProfiles") + (synopsis "Implementation of gene expression anti-profiles") + (description + "This package implements the gene expression anti-profiles method. +Anti-profiles are a new approach for developing cancer genomic signatures that +specifically take advantage of gene expression heterogeneity. They explicitly +model increased gene expression variability in cancer to define robust and +reproducible gene expression signatures capable of accurately distinguishing +tumor samples from healthy controls.") + (license license:artistic2.0))) + (define-public r-biocversion (package (name "r-biocversion")