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envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-aggregatebiovar): New variable. --- gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) base-commit: 4fb6ef6636acd7608889639c1b2e492517256f76 diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 67ee6079c6..8f76324330 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1664,6 +1664,40 @@ (define-public r-adamgui the @code{GFAGpathUi} function.") (license license:gpl2+))) +(define-public r-aggregatebiovar + (package + (name "r-aggregatebiovar") + (version "1.4.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "aggregateBioVar" version)) + (sha256 + (base32 + "1wbfp1pf62di6pzxsf36lmzk6y9dllz1n4iv3mhpb1x8cvy4hqqk")))) + (properties `((upstream-name . "aggregateBioVar"))) + (build-system r-build-system) + (propagated-inputs (list r-matrix + r-rlang + r-s4vectors + r-singlecellexperiment + r-summarizedexperiment + r-tibble)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/jasonratcliff/aggregateBioVar") + (synopsis + "Differential gene expression analysis for multi-subject scRNA-seq") + (description + "This package @code{aggregateBioVar} contains tools to summarize single +cell gene expression profiles at the level of subject for single cell RNA-seq +data collected from more than one subject (e.g. biological sample or technical +replicates). A @code{SingleCellExperiment} object is taken as input and +converted to a list of @code{SummarizedExperiment} objects, where each list +element corresponds to an assigned cell type. The @code{SummarizedExperiment} +objects contain aggregate gene-by-subject count matrices and inter-subject +column metadata for individual subjects that can be processed using downstream +bulk RNA-seq tools.") + (license license:gpl3))) + (define-public r-aneufinder (package (name "r-aneufinder")