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envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-affixcan): New variable. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) base-commit: 30ff557bd7255dddec16f4a032e58f5a88d5e448 diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fa862d736f..925ebcdbdc 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1616,6 +1616,31 @@ (define-public r-adam functionally associated genes} (GFAG).") (license license:gpl2+))) +(define-public r-affixcan + (package + (name "r-affixcan") + (version "1.12.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AffiXcan" version)) + (sha256 + (base32 + "06yn87briv2141jqad934gg5rcd90w5nghrgmbhqnmwafn72gj9d")))) + (properties `((upstream-name . "AffiXcan"))) + (build-system r-build-system) + (propagated-inputs (list r-biocparallel r-crayon r-multiassayexperiment + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/AffiXcan") + (synopsis "Functional approach to impute genetically regulated expression") + (description + "The @code{AffiXcan} package imputes a @dfn{Genetically regulated +expression} (GReX) for a set of genes in a sample of individuals, using a method +based on the @dfn{total binding affinity} (TBA). Statistical models to impute +GReX can be trained with a training dataset where the real total expression +values are known.") + (license license:gpl3))) + (define-public r-aneufinder (package (name "r-aneufinder")