From patchwork Sun Apr 17 15:10:44 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 38626 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 9923427BBEA; Sun, 17 Apr 2022 16:12:13 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 62D7A27BBE9 for ; Sun, 17 Apr 2022 16:12:13 +0100 (BST) Received: from localhost ([::1]:43390 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1ng6ZQ-0005tZ-It for patchwork@mira.cbaines.net; Sun, 17 Apr 2022 11:12:12 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:48410) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ng6ZG-0005ss-G5 for guix-patches@gnu.org; Sun, 17 Apr 2022 11:12:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:43035) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1ng6ZG-0006w6-7G for guix-patches@gnu.org; Sun, 17 Apr 2022 11:12:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1ng6ZG-0002t6-3Q for guix-patches@gnu.org; Sun, 17 Apr 2022 11:12:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#54991] [PATCH 1/3] gnu: Add r-adductdata. References: In-Reply-To: Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 17 Apr 2022 15:12:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 54991 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <54991@debbugs.gnu.org> Received: via spool by 54991-submit@debbugs.gnu.org id=B54991.165020831211069 (code B ref 54991); Sun, 17 Apr 2022 15:12:02 +0000 Received: (at 54991) by debbugs.gnu.org; 17 Apr 2022 15:11:52 +0000 Received: from localhost ([127.0.0.1]:36929 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ng6Z5-0002sO-QK for submit@debbugs.gnu.org; Sun, 17 Apr 2022 11:11:52 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:49225) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ng6Z4-0002rv-3y for 54991@debbugs.gnu.org; Sun, 17 Apr 2022 11:11:50 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id 66A5A3001FA for <54991@debbugs.gnu.org>; Sun, 17 Apr 2022 17:11:43 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1650208302; x=1652022703; bh=qjqBMkZFzsUEQ/odQgXLbB6gkErbDLU6Os9+QUTmcyo=; b=FNAD9sWZBTXv RJkjE6ht3iTqEwwLC2P4tPoA9dQZrfhiBtYJDvHyWzZUpYTfiVZnhrX8Kz1dEiuQ 3N7Ypw57aS5Q2K1fa/YGOchExkwM/CdZZPaIXySpSAs0LP/v4jHwMReiBxqnmloe WJ1MuovRzTvxVhP8SokCbmZXpwc+qjE= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id WuQfHA27EAPN for <54991@debbugs.gnu.org>; Sun, 17 Apr 2022 17:11:42 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for <54991@debbugs.gnu.org>; Sun, 17 Apr 2022 17:11:42 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2375.24; Sun, 17 Apr 2022 17:11:41 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sun, 17 Apr 2022 17:10:44 +0200 Message-ID: <20220417151046.2206-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.34.0 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1000-26840.000 X-TM-AS-Result: No-10--0.954400-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEBkr LtyHdvykBpzxkixO8HnuNT8xdcEnQwE+dA3RWUSvwLYk+NSxc5r4qCLIu0mtIIDrFJZyk4Yaqbs +nJ/tFJGGsZX0q3FpiOhAZQXEXXZuCxH+nTDZ1NOrm7DrUlmNkIAy6p60ZV62fJ5/bZ6npdjKay T/BQTiGl1AUl3bmfTuWtEiGBITT7umZNIQaTM6NL8do8u+ydK8kWhXJCw2P61z3NUoQbEHCWWX5 NekR+Rz3qg+biYZDoH3u3JYMriW/dm2xSyikSK/tOdWe/Uk/vuwZO9kmaWWvP8+E8vSQCkfySOb 56URxsg= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--0.954400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1000-26840.000 X-TM-SNTS-SMTP: 718E26B7E0B016D904162FA10773CFE13832A87A161F0BFC5A0468A556326A742000:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-adductdata): New variable. --- gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) base-commit: 0c89fe9e17dc9e628c73959289464ac5f146c7cd diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index bec3496057..6e4ed31154 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1166,6 +1166,30 @@ (define-public r-abadata All datasets are restricted to protein coding genes.") (license license:gpl2+))) +(define-public r-adductdata + (package + (name "r-adductdata") + (version "1.10.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "adductData" version + 'experiment)) + (sha256 + (base32 + "0bp74p06gskwn2xl1srpnmsq27ajsrlynkzw6fcmvwwjcrzljmnj")))) + (properties `((upstream-name . "adductData"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationhub r-experimenthub)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/adductData") + (synopsis + "Data from untargeted mass spectrometry of modifications to Cys34") + (description + "This package contains data from untargeted @dfn{mass spectrometry} (MS) +of modifications to @dfn{oxidized cysteine} (Cys) 34 in @dfn{human serum +albumin} (HSA).") + (license license:artistic2.0))) + (define-public r-aneufinderdata (package (name "r-aneufinderdata") From patchwork Sun Apr 17 15:10:45 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 38627 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5ECD927BBEA; Sun, 17 Apr 2022 16:12:14 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 1B85E27BBE9 for ; Sun, 17 Apr 2022 16:12:14 +0100 (BST) Received: from localhost ([::1]:43426 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1ng6ZR-0005vS-7C for patchwork@mira.cbaines.net; Sun, 17 Apr 2022 11:12:13 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:48414) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ng6ZG-0005t6-Tj for guix-patches@gnu.org; Sun, 17 Apr 2022 11:12:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:43036) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1ng6ZG-0006wC-Kh for guix-patches@gnu.org; Sun, 17 Apr 2022 11:12:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1ng6ZG-0002tE-Fn for guix-patches@gnu.org; Sun, 17 Apr 2022 11:12:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#54991] [PATCH 2/3] gnu: Add r-orgmassspecr. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 17 Apr 2022 15:12:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 54991 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <54991@debbugs.gnu.org> Received: via spool by 54991-submit@debbugs.gnu.org id=B54991.165020831611082 (code B ref 54991); Sun, 17 Apr 2022 15:12:02 +0000 Received: (at 54991) by debbugs.gnu.org; 17 Apr 2022 15:11:56 +0000 Received: from localhost ([127.0.0.1]:36931 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ng6ZA-0002sg-1w for submit@debbugs.gnu.org; Sun, 17 Apr 2022 11:11:56 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:47601) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ng6Z4-0002ry-88 for 54991@debbugs.gnu.org; Sun, 17 Apr 2022 11:11:51 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id D93AD300206 for <54991@debbugs.gnu.org>; Sun, 17 Apr 2022 17:11:44 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received:received:received; s=mdc; t= 1650208304; x=1652022705; bh=5Q4hBcmpPy2YLLNWwhv5arMtve/0cqovh48 i79a67Ss=; b=SfG0YeqQUtRCEGPWlys9wE3oPeV15Vi29SFQLwGXVDvEZyRYCfM EbBCzPyUWhtZ2FI+5nw5Hkq5Hz+3/UQfVS9ZNnhmvw8gX8tD0UBXPrbfqzgRZyon UR0JjWc/Gje3B4DRwuBWwZ1UXey4V2CO69KcT8YaXNjOyNJMNOHb7HV8= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id HXHdofFW5COh for <54991@debbugs.gnu.org>; Sun, 17 Apr 2022 17:11:44 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for <54991@debbugs.gnu.org>; Sun, 17 Apr 2022 17:11:44 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2375.24; Sun, 17 Apr 2022 17:11:41 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sun, 17 Apr 2022 17:10:45 +0200 Message-ID: <20220417151046.2206-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.34.0 In-Reply-To: <20220417151046.2206-1-madalinionel.patrascu@mdc-berlin.de> References: <20220417151046.2206-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1000-26840.000 X-TM-AS-Result: No-10--3.420300-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEOHX C6tRk611ZRUjkVFROF6mO9JfpHloPipe4ofkluPsa87CDXaKRVKFzNNPDc6umJIny3UvC7x7kYd nzk6dz7ZO17mkczljdz0Urph5wKwpcu2IYLQNwP+rm7DrUlmNkIAy6p60ZV62yA7duzCw6dLdB/ CxWTRRuyISicMwjYJ/CQvlWYtoEBFNMfv+c+4m9di0UZhsgwM1UAFqPZ/Jin0OFYe6OHTMPVz51 3apiied/KqCUN6GAa/B13trD2X/EqoU6MPxtu6bBUK6zKSeNAsoQg4MrLBPLqN8mCVfMdDqzFFX NLNe3bF/6uEw9r+ytQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.420300-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1000-26840.000 X-TM-SNTS-SMTP: B4997E61AFCC172CFC162BDF69B85E54FF0EABDC8D43707C8958C797C9F09F872000:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-orgmassspecr): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index bc95eee065..17396d130c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1068,6 +1068,28 @@ (define-public r-oenb @url{https://www.oenb.at/en/Statistics/User-Defined-Tables/webservice.html}.") (license license:gpl2+))) +(define-public r-orgmassspecr + (package + (name "r-orgmassspecr") + (version "0.5-3") + (source (origin + (method url-fetch) + (uri (cran-uri "OrgMassSpecR" version)) + (sha256 + (base32 + "1dx9d8rb1dfqyhyc26zhfnxiv3rz2ikvs2mwqnsrq3lsjs9dvyc8")))) + (properties `((upstream-name . "OrgMassSpecR"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "http://OrgMassSpec.github.io/") + (synopsis "Organic or biological mass spectrometry data analysis") + (description + "This package @code{OrgMassSpecR} is an extension of the @code{R} +statistical computing language. It contains functions to assist with organic +or biological mass spectrometry data analysis. Mass spectral libraries are +available as companion packages.") + (license license:bsd-2))) + (define-public r-scales (package (name "r-scales") From patchwork Sun Apr 17 15:10:46 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 38625 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 4B8F627BBEA; Sun, 17 Apr 2022 16:12:13 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D54C327BBE9 for ; Sun, 17 Apr 2022 16:12:12 +0100 (BST) Received: from localhost ([::1]:43388 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1ng6ZQ-0005tM-1t for patchwork@mira.cbaines.net; Sun, 17 Apr 2022 11:12:12 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:48408) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ng6ZG-0005sq-8s for guix-patches@gnu.org; Sun, 17 Apr 2022 11:12:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:43034) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1ng6ZF-0006w1-Uf for guix-patches@gnu.org; Sun, 17 Apr 2022 11:12:01 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1ng6ZF-0002sz-Mk for guix-patches@gnu.org; Sun, 17 Apr 2022 11:12:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#54991] [PATCH 3/3] gnu: Add r-adductomicsr. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 17 Apr 2022 15:12:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 54991 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <54991@debbugs.gnu.org> Received: via spool by 54991-submit@debbugs.gnu.org id=B54991.165020831111063 (code B ref 54991); Sun, 17 Apr 2022 15:12:01 +0000 Received: (at 54991) by debbugs.gnu.org; 17 Apr 2022 15:11:51 +0000 Received: from localhost ([127.0.0.1]:36927 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ng6Z5-0002sH-Ak for submit@debbugs.gnu.org; Sun, 17 Apr 2022 11:11:51 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:39391) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ng6Z4-0002rw-3y for 54991@debbugs.gnu.org; Sun, 17 Apr 2022 11:11:50 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id 1C1103001FD for <54991@debbugs.gnu.org>; Sun, 17 Apr 2022 17:11:44 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received:received:received; s=mdc; t= 1650208303; x=1652022704; bh=UjtDAQRn7GURVBvCBRXptZY0cfVSHE6Dscv 9EJ1cHU4=; b=AC7/WMFR5pb2mTMp+fWC4//XZzdzM8HTMLSkyGTXLlwQlmtIfTJ VMBZi7N13YVN8S2koj1wjHVXU8IEgoxNMYk4sg3oEEfGvMIrflh+1EALBLDnv7A6 rrtUhh7QV4LFfMTD/ZHirOdzdKk0rs6jxgfV/KQglF/k7N3B0/MnD30A= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id tDeNMUL0PpeQ for <54991@debbugs.gnu.org>; Sun, 17 Apr 2022 17:11:43 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for <54991@debbugs.gnu.org>; Sun, 17 Apr 2022 17:11:43 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2375.24; Sun, 17 Apr 2022 17:11:42 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sun, 17 Apr 2022 17:10:46 +0200 Message-ID: <20220417151046.2206-3-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.34.0 In-Reply-To: <20220417151046.2206-1-madalinionel.patrascu@mdc-berlin.de> References: <20220417151046.2206-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1000-26840.000 X-TM-AS-Result: No-10--0.076400-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEK5d mdubuPz8rCCXG3Lpn8TuNT8xdcEnQwE+dA3RWUSvwLYk+NSxc5r4qCLIu0mtIKY5ZGw7wyeHjFK /NcS7G4nP/7cJSkwnVRJTjjs9yT6Yo8WMkQWv6iXBcIE78YqRWvcUt5lc1lLgKIzdZS3ou0XWAg /MCyq9m6FD/i+qnXIdjpQkRCr1e6Dhb4baqyx7lONjOVFahfFNj2yADUeiURCYkrXjHzTLuCwcO cq3FppRm6F5YUap0ANZKCalsVmcQjWQPYq1JOarY9u3lK2/Yrn87HRNT0KLkg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--0.076400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1000-26840.000 X-TM-SNTS-SMTP: 97F2450C49EA330FB9679FE5E03BED3B7551C02EB28B40931B4B2164286536ED2000:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-adductomicsr): New variable. --- gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++ 1 file changed, 44 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 6e4ed31154..2cd4c89aa9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1605,6 +1605,50 @@ (define-public r-absseq ranking by fold-change and visualization.") (license license:gpl3+))) +(define-public r-adductomicsr + (package + (name "r-adductomicsr") + (version "1.10.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "adductomicsR" version)) + (sha256 + (base32 + "0cnvxrk0h3r6jpa4g4qismg6zk5c7rf8lqixg89c24i98gffkbcl")))) + (properties `((upstream-name . "adductomicsR"))) + (build-system r-build-system) + (propagated-inputs (list r-adductdata + r-ade4 + r-annotationhub + r-bootstrap + r-data-table + r-dosnow + r-dplyr + r-dt + r-experimenthub + r-fastcluster + r-foreach + r-fpc + r-mzr + r-orgmassspecr + r-pastecs + r-pracma + r-rcppeigen + r-reshape2 + r-rvest + r-smoother + r-zoo)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/adductomicsR") + (synopsis "Processing of adductomic mass spectral datasets") + (description + "This package @code{adductomicsR} processes data generated by the +@dfn{second stage of mass spectrometry} (MS2) to identify potentially adducted +peptides from spectra that has been corrected for mass drift and retention time +drift and quantifies level mass spectral peaks from @dfn{first stage of mass +spectrometry} (MS1) data.") + (license license:artistic2.0))) + (define-public r-aneufinder (package (name "r-aneufinder")