From patchwork Mon Jan 31 10:40:32 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Efraim Flashner X-Patchwork-Id: 36909 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 55BF027BBEA; Mon, 31 Jan 2022 10:43:02 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.9 required=5.0 tests=BAYES_00,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H3,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 130E727BBE9 for ; Mon, 31 Jan 2022 10:43:02 +0000 (GMT) Received: from localhost ([::1]:56888 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1nEU9F-0008MT-30 for patchwork@mira.cbaines.net; Mon, 31 Jan 2022 05:43:01 -0500 Received: from eggs.gnu.org ([209.51.188.92]:54996) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nEU8J-0008LX-Si for guix-patches@gnu.org; Mon, 31 Jan 2022 05:42:04 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:45505) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1nEU8I-00018e-Dn for guix-patches@gnu.org; Mon, 31 Jan 2022 05:42:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1nEU8I-0004bR-Cv for guix-patches@gnu.org; Mon, 31 Jan 2022 05:42:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#53656] [PATCH 1/2] gnu: Add julia-linesearches. Resent-From: Efraim Flashner Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 31 Jan 2022 10:42:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 53656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 53656@debbugs.gnu.org Cc: Efraim Flashner Received: via spool by 53656-submit@debbugs.gnu.org id=B53656.164362567717620 (code B ref 53656); Mon, 31 Jan 2022 10:42:02 +0000 Received: (at 53656) by debbugs.gnu.org; 31 Jan 2022 10:41:17 +0000 Received: from localhost ([127.0.0.1]:38405 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nEU7Y-0004a8-Ka for submit@debbugs.gnu.org; Mon, 31 Jan 2022 05:41:16 -0500 Received: from flashner.co.il ([178.62.234.194]:35596) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nEU7U-0004Zr-CA for 53656@debbugs.gnu.org; Mon, 31 Jan 2022 05:41:15 -0500 Received: from localhost (unknown [31.210.177.79]) by flashner.co.il (Postfix) with ESMTPSA id 7F57F40190; Mon, 31 Jan 2022 10:41:06 +0000 (UTC) From: Efraim Flashner Date: Mon, 31 Jan 2022 12:40:32 +0200 Message-Id: <9e56fc467f7b56b65422a010a43a5df3f50fcdd8.1643625386.git.efraim@flashner.co.il> X-Mailer: git-send-email 2.34.0 In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/julia-xyz.scm (julia-linesearches): New variable. --- gnu/packages/julia-xyz.scm | 45 +++++++++++++++++++++++++++++++++++++- 1 file changed, 44 insertions(+), 1 deletion(-) diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index e30cf39dc9..7de0c32113 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2020, 2021 Nicolò Balzarotti ;;; Copyright © 2021, 2022 Simon Tournier -;;; Copyright © 2021 Efraim Flashner +;;; Copyright © 2021, 2022 Efraim Flashner ;;; Copyright © 2021 Vinicius Monego ;;; Copyright © 2021 jgart ;;; @@ -3104,6 +3104,49 @@ (define-public julia-lazyarrays implementation of matrix-free methods for iterative solvers.") (license license:expat))) +(define-public julia-linesearches + (package + (name "julia-linesearches") + (version "7.1.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaNLSolvers/LineSearches.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1qc4la07w6s1xhcyd0hvbnpr31zc1a2ssgyybc8biv5m00g0dnr0")))) + (build-system julia-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'link-depot 'skip-optim-tests + (lambda _ + (substitute* "test/examples.jl" + ;; Prevent a cycle with Optim.jl. + (("^ SKIPFILE.*") "") + (("^ #SKIPFILE") " SKIPFILE")))) + (add-after 'link-depot 'skip-doublefloats-tests + (lambda _ + (substitute* "test/runtests.jl" + (("using DoubleFloats.*") "") + ((".*arbitrary_precision\\.jl.*") ""))))))) + (propagated-inputs + (list julia-nlsolversbase + julia-nanmath + julia-parameters)) + (native-inputs + ;; DoubleFloats.jl transitively depends on TimeZones.jl, which is currently + ;; unpackageable due to its oversized Artifacts.toml. + (list ;julia-doublefloats + julia-optimtestproblems)) + (home-page "https://github.com/JuliaNLSolvers/LineSearches.jl") + (synopsis "Line search methods for optimization and root-finding") + (description "This package provides an interface to line search algorithms +implemented in Julia.") + (license license:expat))) + (define-public julia-logexpfunctions (package (name "julia-logexpfunctions") From patchwork Mon Jan 31 10:40:33 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Efraim Flashner X-Patchwork-Id: 36910 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id DAA7F27BBEA; Mon, 31 Jan 2022 10:43:02 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.9 required=5.0 tests=BAYES_00,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H3,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id A6E6F27BBE9 for ; Mon, 31 Jan 2022 10:43:02 +0000 (GMT) Received: from localhost ([::1]:56892 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1nEU9E-0008Ml-Qe for patchwork@mira.cbaines.net; Mon, 31 Jan 2022 05:43:00 -0500 Received: from eggs.gnu.org ([209.51.188.92]:55002) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nEU8K-0008Ln-Aj for guix-patches@gnu.org; Mon, 31 Jan 2022 05:42:05 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:45506) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1nEU8I-00018g-Rb for guix-patches@gnu.org; Mon, 31 Jan 2022 05:42:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1nEU8I-0004bZ-QQ for guix-patches@gnu.org; Mon, 31 Jan 2022 05:42:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#53656] [PATCH 2/2] gnu: Add julia-optim. Resent-From: Efraim Flashner Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 31 Jan 2022 10:42:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 53656 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 53656@debbugs.gnu.org Cc: Efraim Flashner Received: via spool by 53656-submit@debbugs.gnu.org id=B53656.164362571217670 (code B ref 53656); Mon, 31 Jan 2022 10:42:02 +0000 Received: (at 53656) by debbugs.gnu.org; 31 Jan 2022 10:41:52 +0000 Received: from localhost ([127.0.0.1]:38408 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nEU88-0004aw-0T for submit@debbugs.gnu.org; Mon, 31 Jan 2022 05:41:52 -0500 Received: from flashner.co.il ([178.62.234.194]:35602) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nEU86-0004ai-HD for 53656@debbugs.gnu.org; Mon, 31 Jan 2022 05:41:51 -0500 Received: from localhost (unknown [31.210.177.79]) by flashner.co.il (Postfix) with ESMTPSA id AB51F40160; Mon, 31 Jan 2022 10:41:44 +0000 (UTC) From: Efraim Flashner Date: Mon, 31 Jan 2022 12:40:33 +0200 Message-Id: <93a51e504cd30094511b1eac3957e10ff800cdf0.1643625386.git.efraim@flashner.co.il> X-Mailer: git-send-email 2.34.0 In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/julia-xyz.scm (julia-optim): New variable. --- gnu/packages/julia-xyz.scm | 48 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 48 insertions(+) diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index 7de0c32113..2fcc4cf83e 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -23,6 +23,7 @@ (define-module (gnu packages julia-xyz) #:use-module ((guix licenses) #:prefix license:) #:use-module (gnu packages) + #:use-module (guix gexp) #:use-module (guix utils) #:use-module (guix packages) #:use-module (guix git-download) @@ -3650,6 +3651,53 @@ (define-public julia-nnlib doesn't provide any other \"high-level\" functionality like layers or AD.") (license license:expat))) +(define-public julia-optim + (package + (name "julia-optim") + (version "1.6.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaNLSolvers/Optim.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0nvl3xp9c6r80y9n7fic4zyq2443apfmbcpnx0wvgkv4vsy08x5j")))) + (build-system julia-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'adjust-tests + (lambda _ + ;; TODO: Figure out why this test fails. + (substitute* "test/runtests.jl" + ((".*l_bfgs.*") ""))))))) + (propagated-inputs + (list julia-compat + julia-fillarrays + julia-forwarddiff + julia-linesearches + julia-nanmath + julia-nlsolversbase + julia-parameters + julia-positivefactorizations + julia-statsbase)) + (native-inputs + (list julia-linesearches + julia-measurements + julia-nlsolversbase + julia-optimtestproblems + julia-positivefactorizations + julia-recursivearraytools + julia-stablerngs)) + (home-page "https://github.com/JuliaNLSolvers/Optim.jl") + (synopsis "Optimization functions for Julia") + (description "@code{Optim.jl} is a package for univariate and multivariate +optimization of functions.") + (license license:expat))) + (define-public julia-optimtestproblems (package (name "julia-optimtestproblems")