From patchwork Sun Jan 9 04:37:22 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 36177 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id E4F8427BBEA; Sun, 9 Jan 2022 04:38:10 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H3,RCVD_IN_MSPIKE_WL, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 9224827BBE9 for ; Sun, 9 Jan 2022 04:38:10 +0000 (GMT) Received: from localhost ([::1]:42262 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1n6Py5-0008U8-PC for patchwork@mira.cbaines.net; Sat, 08 Jan 2022 23:38:09 -0500 Received: from eggs.gnu.org ([209.51.188.92]:57622) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1n6Pxy-0008TH-DV for guix-patches@gnu.org; Sat, 08 Jan 2022 23:38:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:56164) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1n6Pxy-000494-4i for guix-patches@gnu.org; Sat, 08 Jan 2022 23:38:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1n6Pxy-0007z8-0X for guix-patches@gnu.org; Sat, 08 Jan 2022 23:38:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#53135] [PATCH 1/5] gnu: Add python-pyvo. References: <20220109043522.27612-1-monego@posteo.net> In-Reply-To: <20220109043522.27612-1-monego@posteo.net> Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 09 Jan 2022 04:38:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 53135 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 53135@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 53135-submit@debbugs.gnu.org id=B53135.164170307230664 (code B ref 53135); Sun, 09 Jan 2022 04:38:01 +0000 Received: (at 53135) by debbugs.gnu.org; 9 Jan 2022 04:37:52 +0000 Received: from localhost ([127.0.0.1]:49063 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n6Pxo-0007yW-9i for submit@debbugs.gnu.org; Sat, 08 Jan 2022 23:37:52 -0500 Received: from mout01.posteo.de ([185.67.36.65]:48001) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n6Pxm-0007yE-Gl for 53135@debbugs.gnu.org; Sat, 08 Jan 2022 23:37:51 -0500 Received: from submission (posteo.de [89.146.220.130]) by mout01.posteo.de (Postfix) with ESMTPS id 8EB90240026 for <53135@debbugs.gnu.org>; Sun, 9 Jan 2022 05:37:44 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1641703064; bh=825NWjfrp8N8WwsXtPiwEom4KagVY4ECaZ/FgFZ8yOc=; h=From:To:Cc:Subject:Date:From; b=iReLhilw/fyeK1LwT9DZZ6nNrCyZshwk71fenz4YZ92TCDkinHCuodQW30h5ANvf0 jgwsr2dTjbCorJkf4/gP4igZOvYwE2tHCGiTgaBYlMaWsOy4iiB7OPmxbz4j04ESF0 OLfuASOVr3s/Oasrdyn8n7G3aZ3n31ZZiwlSrZDC+ncL+zxrcLlTLs3yNt9DxyoqMt mBvH4/yLrwYbUTigRwwX2DJAC/eV+9v/2L9bEqMjKY8+Ysv8X8zrWjaZ9yCBiTiTUv FiktD14QEgjNWVo31Mqcu428rjxaot+AysMfg+qQGpoDg0l4HD4IdcLbE/ER9yCw12 DItEihRrl2toA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4JWkhl2rYNz9rxN; Sun, 9 Jan 2022 05:37:42 +0100 (CET) From: Vinicius Monego Date: Sun, 9 Jan 2022 04:37:22 +0000 Message-Id: <20220109043726.28142-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/astronomy.scm (python-pyvo): New variable. --- gnu/packages/astronomy.scm | 37 ++++++++++++++++++++++++++++++++++++- 1 file changed, 36 insertions(+), 1 deletion(-) diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index a7a07fa3a8..ef85ec79e0 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -6,7 +6,7 @@ ;;; Copyright © 2020 R Veera Kumar ;;; Copyright © 2020, 2021 Guillaume Le Vaillant ;;; Copyright © 2021 Sharlatan Hellseher -;;; Copyright © 2021 Vinicius Monego +;;; Copyright © 2021, 2022 Vinicius Monego ;;; Copyright © 2021 Greg Hogan ;;; Copyright © 2021 Foo Chuan Wei ;;; @@ -55,6 +55,7 @@ #:use-module (gnu packages python-check) #:use-module (gnu packages python-crypto) #:use-module (gnu packages python-science) + #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages qt) #:use-module (gnu packages time) @@ -705,6 +706,40 @@ much of the core functionality and some common tools needed for performing astronomy and astrophysics.") (license license:bsd-3))) +(define-public python-pyvo + (package + (name "python-pyvo") + (version "1.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyvo" version)) + (sha256 + (base32 "1lap703wxbyxqlbk85myirp4pkdnc6cg10xhfajfsvz5k0hm5ffw")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest" "--pyargs" "pyvo" "-k" + (string-append ; these tests use the network + "not test_access_with_string" + " and not test_access_with_list" + " and not test_access_with_expansion")))))))) + (native-inputs + (list python-pytest-astropy python-requests-mock)) + (propagated-inputs + (list python-astropy python-mimeparse python-pillow python-requests)) + (home-page "https://github.com/astropy/pyvo") + (synopsis "Access Virtual Observatory data and services") + (description + "PyVO is a package providing access to remote data and services of the +Virtual observatory (VO) using Python.") + (license license:bsd-3))) + (define-public python-astral (package (name "python-astral") From patchwork Sun Jan 9 04:37:23 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 36176 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 24EB327BBEB; Sun, 9 Jan 2022 04:38:10 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H3,RCVD_IN_MSPIKE_WL, SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id CFBF427BBEA for ; Sun, 9 Jan 2022 04:38:09 +0000 (GMT) Received: from localhost ([::1]:42242 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1n6Py5-0008TX-1n for patchwork@mira.cbaines.net; Sat, 08 Jan 2022 23:38:09 -0500 Received: from eggs.gnu.org ([209.51.188.92]:57624) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1n6Pxy-0008TP-Qz for guix-patches@gnu.org; Sat, 08 Jan 2022 23:38:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:56165) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1n6Pxy-00049A-Hu for guix-patches@gnu.org; Sat, 08 Jan 2022 23:38:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1n6Pxy-0007zF-Fb for guix-patches@gnu.org; Sat, 08 Jan 2022 23:38:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#53135] [PATCH 2/5] gnu: Add python-astroquery. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 09 Jan 2022 04:38:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 53135 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 53135@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 53135-submit@debbugs.gnu.org id=B53135.164170307730680 (code B ref 53135); Sun, 09 Jan 2022 04:38:02 +0000 Received: (at 53135) by debbugs.gnu.org; 9 Jan 2022 04:37:57 +0000 Received: from localhost ([127.0.0.1]:49067 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n6Pxs-0007ym-M0 for submit@debbugs.gnu.org; Sat, 08 Jan 2022 23:37:57 -0500 Received: from mout02.posteo.de ([185.67.36.66]:48399) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n6Pxq-0007yM-NQ for 53135@debbugs.gnu.org; Sat, 08 Jan 2022 23:37:55 -0500 Received: from submission (posteo.de [89.146.220.130]) by mout02.posteo.de (Postfix) with ESMTPS id A28AC240101 for <53135@debbugs.gnu.org>; Sun, 9 Jan 2022 05:37:48 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1641703068; bh=E6XABjOGHz/K+MlM6AnMnCSKfM6A2+BSkf34jWDBJOc=; h=From:To:Cc:Subject:Date:From; b=fe47X1RRiDh+WXwMM9f1q3NRgKrwomgEVbSgQ8MhO8EJx+KWBkq7F1wxecqb/TEUf B1nF3EB8OPJlKZHM1jpHjU1keaCef2j40gVJtoMCkkK+PrSnwmE1k9B7t3FG3/vcI1 Sb4FXh7kVzJ1m4grlBUuEQHGukBBkR8IV3T7pnBxdVAHiXWRqcoNaFEHEn/qdeXf4h etxUgJgcRacBuFMm2Cyd1Pzb2Yg6dgbYYnZ4agOYI7JIDqUl1p+GpsKW8dPtfO/vJy EieZrIwDiO2GWa8ZEWrB2zg4GSF0gc1a4/W2eVDIfhR+B7MnQ69zaFf82V1FPvqV/U bTWAdRTiuCfpg== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4JWkhq3qV7z9rxP; Sun, 9 Jan 2022 05:37:47 +0100 (CET) From: Vinicius Monego Date: Sun, 9 Jan 2022 04:37:23 +0000 Message-Id: <20220109043726.28142-2-monego@posteo.net> In-Reply-To: <20220109043726.28142-1-monego@posteo.net> References: <20220109043726.28142-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/astronomy.scm (python-astroquery): New variable. --- gnu/packages/astronomy.scm | 44 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 44 insertions(+) diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index ef85ec79e0..ee65fbf2c5 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -706,6 +706,50 @@ much of the core functionality and some common tools needed for performing astronomy and astrophysics.") (license license:bsd-3))) +(define-public python-astroquery + (package + (name "python-astroquery") + (version "0.4.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "astroquery" version)) + (sha256 + (base32 "06xy0qzqmps6z5vwfkh5fkhr151p7g94r2j0mvp1rc8zns22y010")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'check 'writable-home + (lambda _ ; some tests need a writable home + (setenv "HOME" (getcwd)))) + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest" "--pyargs" "astroquery" + ;; Skip tests that require online data. + "-m" "not remote_data"))))))) + (propagated-inputs + (list python-astropy + python-beautifulsoup4 + python-html5lib + python-keyring + python-numpy + python-pyvo + python-requests)) + (native-inputs + (list python-flask + python-jinja2 + python-matplotlib + python-pytest-astropy + python-pytest-dependency)) + (home-page "https://www.astropy.org/astroquery/") + (synopsis "Access online astronomical data resources") + (description "Astroquery is a package that contains a collection of tools +to access online Astronomical data. Each web service has its own sub-package.") + (license license:bsd-3))) + (define-public python-pyvo (package (name "python-pyvo") From patchwork Sun Jan 9 04:38:39 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 36178 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 2EFB127BBEA; Sun, 9 Jan 2022 04:39:11 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H3,RCVD_IN_MSPIKE_WL, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id DEC3927BBE9 for ; Sun, 9 Jan 2022 04:39:10 +0000 (GMT) Received: from localhost ([::1]:43152 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1n6Pz3-0000qD-Vw for patchwork@mira.cbaines.net; Sat, 08 Jan 2022 23:39:10 -0500 Received: from eggs.gnu.org ([209.51.188.92]:57734) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1n6Pyw-0000pv-AN for guix-patches@gnu.org; Sat, 08 Jan 2022 23:39:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:56176) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1n6Pyw-0004Df-1k for guix-patches@gnu.org; Sat, 08 Jan 2022 23:39:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1n6Pyv-00081R-VL for guix-patches@gnu.org; Sat, 08 Jan 2022 23:39:01 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#53135] [PATCH 3/5] gnu: Add python-astropy-healpix. References: <20220109043522.27612-1-monego@posteo.net> In-Reply-To: <20220109043522.27612-1-monego@posteo.net> Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 09 Jan 2022 04:39:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 53135 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 53135@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 53135-submit@debbugs.gnu.org id=B53135.164170313630811 (code B ref 53135); Sun, 09 Jan 2022 04:39:01 +0000 Received: (at 53135) by debbugs.gnu.org; 9 Jan 2022 04:38:56 +0000 Received: from localhost ([127.0.0.1]:49073 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n6Pyq-00080r-93 for submit@debbugs.gnu.org; Sat, 08 Jan 2022 23:38:56 -0500 Received: from mout02.posteo.de ([185.67.36.66]:50333) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n6Pyn-00080b-Id for 53135@debbugs.gnu.org; Sat, 08 Jan 2022 23:38:54 -0500 Received: from submission (posteo.de [89.146.220.130]) by mout02.posteo.de (Postfix) with ESMTPS id A05C0240101 for <53135@debbugs.gnu.org>; Sun, 9 Jan 2022 05:38:47 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1641703127; bh=gmTEwDH0yTWTABohFhoHTCV8cWwbK3B3zDyhvDDqXeY=; h=From:To:Cc:Subject:Date:From; b=DE3NggiY2cmOAeBJbuK6m53Tyya09HfVGBp2iV77uYnjW6DgHFlQyRgl2RoFurCJy elFRVq2gDSOodbVyodMXWQ4f0zhkBVDpKQ5aO9Lidj62yuU2qDgia5Zp2BKDJA3+6g TwUVaXhqYRTrGQD3x8gMw3Qr0RkJ9jUzhYjFftzU8k0bC2C5iSv4gBtNMeRnDOd4mV Vc9OzfnaoKOwdF+wIkSZEV//n9P2E5Dwb5pbxxtXw0JkQjXWxonBbDv/cbM3T3BvDy uDrQoBa7Pc4/GAOWZgqca4AN3ZTKX4zwycadMD4VbAzNr51xDeN/5yFeuFBQFvCXen zC48VWLgpBkTw== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4JWkjy56J7z6tmB; Sun, 9 Jan 2022 05:38:46 +0100 (CET) From: Vinicius Monego Date: Sun, 9 Jan 2022 04:38:39 +0000 Message-Id: <20220109043841.28296-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/astronomy.scm (python-astropy-healpix): New variable. --- gnu/packages/astronomy.scm | 39 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index ee65fbf2c5..1573003c7e 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -706,6 +706,45 @@ much of the core functionality and some common tools needed for performing astronomy and astrophysics.") (license license:bsd-3))) +(define-public python-astropy-healpix + (package + (name "python-astropy-healpix") + (version "0.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "astropy-healpix" version)) + (sha256 + (base32 "1436ml03xkmvx4afzbhfj67ab91418sz1w3lq1b18r43qchnd6j0")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; This file is opened in both install and check phases. + (add-before 'install 'writable-compiler + (lambda _ (make-file-writable "astropy_healpix/_compiler.c"))) + (add-before 'check 'writable-compiler + (lambda _ (make-file-writable "astropy_healpix/_compiler.c"))) + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + ;; Extensions have to be rebuilt before running the tests. + (invoke "python" "setup.py" "build_ext" "--inplace") + (invoke "python" "-m" "pytest" + "--pyargs" "astropy_healpix"))))))) + (native-inputs + (list python-extension-helpers + python-hypothesis + python-pytest-astropy + python-setuptools-scm)) + (propagated-inputs + (list python-astropy python-numpy)) + (home-page "https://github.com/astropy/astropy-healpix") + (synopsis "HEALPix for Astropy") + (description "This package provides HEALPix to the Astropy project.") + (license license:bsd-3))) + (define-public python-astroquery (package (name "python-astroquery") From patchwork Sun Jan 9 04:38:40 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 36179 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 35A1727BBEA; Sun, 9 Jan 2022 04:39:12 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H3,RCVD_IN_MSPIKE_WL, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 0108127BBE9 for ; Sun, 9 Jan 2022 04:39:12 +0000 (GMT) Received: from localhost ([::1]:43208 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1n6Pz5-0000rS-5U for patchwork@mira.cbaines.net; Sat, 08 Jan 2022 23:39:11 -0500 Received: from eggs.gnu.org ([209.51.188.92]:57736) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1n6Pyw-0000q5-Ve for guix-patches@gnu.org; Sat, 08 Jan 2022 23:39:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:56177) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1n6Pyw-0004Dl-NR for guix-patches@gnu.org; Sat, 08 Jan 2022 23:39:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1n6Pyw-00081e-KU for guix-patches@gnu.org; Sat, 08 Jan 2022 23:39:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#53135] [PATCH 4/5] gnu: Add python-photutils. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 09 Jan 2022 04:39:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 53135 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 53135@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 53135-submit@debbugs.gnu.org id=B53135.164170313930829 (code B ref 53135); Sun, 09 Jan 2022 04:39:02 +0000 Received: (at 53135) by debbugs.gnu.org; 9 Jan 2022 04:38:59 +0000 Received: from localhost ([127.0.0.1]:49077 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n6Pys-000819-M8 for submit@debbugs.gnu.org; Sat, 08 Jan 2022 23:38:58 -0500 Received: from mout02.posteo.de ([185.67.36.66]:47253) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n6Pyr-00080g-A8 for 53135@debbugs.gnu.org; Sat, 08 Jan 2022 23:38:57 -0500 Received: from submission (posteo.de [89.146.220.130]) by mout02.posteo.de (Postfix) with ESMTPS id AD5CB240101 for <53135@debbugs.gnu.org>; Sun, 9 Jan 2022 05:38:51 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1641703131; bh=/E2V/tUXSHcgpY6sQMxEkiDig0/IlX8ChCfHUHpGvQU=; h=From:To:Cc:Subject:Date:From; b=pv1yPIf1Nv4n+BKcIRZHEhCID2I1mYPkoJGwarjZTg3TiLDxFb9oVcQamtmdhhefn PZ66Qf6Pgj8RDl5Gb8Wp9nWa4kFvQvk6hvctdsoQNi68UjUxWM8Pw1K5G2ykDHNqby QHa2t+9lTt7oCfqRs4LjPO7kTIxKzNFFPOgcAtFWa+pwjR27aXCriw1gV2ESNVoLq6 Si+vSMUu2kEGOH+sGEKG6pgn19JZ9VdeH2st7c6l/I6bDBADIUoTsxB0ovqLwVJ38r Ko20KYcJwAMzFSSfGK987EHgRQKM8BZPQvZnGr56V/WUZ2rNmL3EckLi/GWQxum4XB p4L2qpsFVfXEA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4JWkk25y08z9rxP; Sun, 9 Jan 2022 05:38:50 +0100 (CET) From: Vinicius Monego Date: Sun, 9 Jan 2022 04:38:40 +0000 Message-Id: <20220109043841.28296-2-monego@posteo.net> In-Reply-To: <20220109043841.28296-1-monego@posteo.net> References: <20220109043841.28296-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/astronomy.scm (python-photutils): New variable. --- gnu/packages/astronomy.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 1573003c7e..20961e1436 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -789,6 +789,40 @@ astronomy and astrophysics.") to access online Astronomical data. Each web service has its own sub-package.") (license license:bsd-3))) +(define-public python-photutils + (package + (name "python-photutils") + (version "1.3.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "photutils" version)) + (sha256 + (base32 "1a8djakaya6w5iv9237gkcz39brqzgrfs2wqrl0izi1s85cfdymn")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest" + #:phases + (modify-phases %standard-phases + ;; This file is opened in both install and check phases. + (add-before 'install 'writable-compiler + (lambda _ (make-file-writable "photutils/_compiler.c"))) + (add-before 'check 'writable-compiler + (lambda _ (make-file-writable "photutils/_compiler.c")))))) + (propagated-inputs + (list python-astropy python-numpy)) + (native-inputs + (list python-cython + python-extension-helpers + python-pytest-astropy + python-pytest-runner + python-setuptools-scm)) + (home-page "https://github.com/astropy/photutils") + (synopsis "Source detection and photometry") + (description "Photutils is an Astropy package for detection and photometry +of astronomical sources.") + (license license:bsd-3))) + (define-public python-pyvo (package (name "python-pyvo") From patchwork Sun Jan 9 04:38:41 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 36180 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 48B9827BBEA; Sun, 9 Jan 2022 04:40:45 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H3,RCVD_IN_MSPIKE_WL, SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 11EC427BBE9 for ; Sun, 9 Jan 2022 04:40:45 +0000 (GMT) Received: from localhost ([::1]:44036 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1n6Q0a-0001c6-8o for patchwork@mira.cbaines.net; Sat, 08 Jan 2022 23:40:44 -0500 Received: from eggs.gnu.org ([209.51.188.92]:57974) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1n6Q03-0001bu-8s for guix-patches@gnu.org; Sat, 08 Jan 2022 23:40:11 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:56183) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1n6Pzv-0004Sx-QB for guix-patches@gnu.org; Sat, 08 Jan 2022 23:40:09 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1n6Pzv-00083X-Lb for guix-patches@gnu.org; Sat, 08 Jan 2022 23:40:03 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#53135] [PATCH 5/5] gnu: Add python-regions. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 09 Jan 2022 04:40:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 53135 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 53135@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 53135-submit@debbugs.gnu.org id=B53135.164170314430879 (code B ref 53135); Sun, 09 Jan 2022 04:40:03 +0000 Received: (at 53135) by debbugs.gnu.org; 9 Jan 2022 04:39:04 +0000 Received: from localhost ([127.0.0.1]:49083 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n6Pyx-00081y-Vx for submit@debbugs.gnu.org; Sat, 08 Jan 2022 23:39:04 -0500 Received: from mout01.posteo.de ([185.67.36.65]:48145) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n6Pyv-00080s-Lp for 53135@debbugs.gnu.org; Sat, 08 Jan 2022 23:39:02 -0500 Received: from submission (posteo.de [89.146.220.130]) by mout01.posteo.de (Postfix) with ESMTPS id 13DA7240026 for <53135@debbugs.gnu.org>; Sun, 9 Jan 2022 05:38:56 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1641703136; bh=mzSjw7sKh9T/SSM72fIbzuFwkI621X9uF8HSD+uuHug=; h=From:To:Cc:Subject:Date:From; b=NkE460fmzg8XwsV8UyxSuxA15wBvytkoE7iELx3dGMX7uIa7rt/VjekzkDzDQLyEd 5ZfRk/Ns33bMLColuwI65AOfUv+DnS7SG8tLeeG8RDPpRdTGXL63Y3bVW2rfMoiKFf qadW/CTC20VHzIgU5GWwuO5MkWavCB5J2LmNdpIi3J4wk9h56m1eITpwXPUPWGqWSg Ed1rExFChjEMjGWDKWN4/VJLmQ+BwDeKj4oBOD/l61KaLxp9rpJFUPYljtw96LmtuB RDM0FIjCK+ysucp49PO5VTrBbNLJuGz0vP+82/cnMo72W3e8t1b63yut9VBfQmii/U s9dDqwdRlxBrQ== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4JWkk71YMmz6tmB; Sun, 9 Jan 2022 05:38:54 +0100 (CET) From: Vinicius Monego Date: Sun, 9 Jan 2022 04:38:41 +0000 Message-Id: <20220109043841.28296-3-monego@posteo.net> In-Reply-To: <20220109043841.28296-1-monego@posteo.net> References: <20220109043841.28296-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/astronomy.scm (python-regions): New variable. --- gnu/packages/astronomy.scm | 39 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 20961e1436..e968fd2480 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -857,6 +857,45 @@ of astronomical sources.") Virtual observatory (VO) using Python.") (license license:bsd-3))) +(define-public python-regions + (package + (name "python-regions") + (version "0.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "regions" version)) + (sha256 + (base32 "1bjrcjchbw3xw1a26d5g198lh7vxpp9m5sal58r7f8mmr1d8g2dc")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest" + #:phases + (modify-phases %standard-phases + ;; This doctest requires online data. + (add-after 'unpack 'delete-doctest + (lambda _ (delete-file "docs/masks.rst"))) + ;; This file is opened in both install and check phases. + (add-before 'install 'writable-compiler + (lambda _ (make-file-writable "regions/_compiler.c"))) + (add-before 'check 'writable-compiler + (lambda _ (make-file-writable "regions/_compiler.c"))) + (add-before 'check 'writable-home + (lambda _ (setenv "HOME" (getcwd))))))) + (propagated-inputs + (list python-astropy python-numpy)) + (native-inputs + (list python-cython + python-extension-helpers + python-pytest-arraydiff + python-pytest-astropy + python-pytest-runner + python-setuptools-scm)) + (home-page "https://github.com/astropy/regions") + (synopsis "Package for region handling") + (description "Regions is an Astropy package for region handling.") + (license license:bsd-3))) + (define-public python-astral (package (name "python-astral")