@@ -1069,6 +1069,42 @@ (define-public r-singlet
similar.")
(license license:gpl2+))))
+(define-public r-stacas
+ (package
+ (name "r-stacas")
+ (version "2.2.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/carmonalab/STACAS")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "13i0h5i6vlbrb8ndq9gr81560z9d74b2c7m3rjfzls01irjza9hm"))))
+ (properties `((upstream-name . "STACAS")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biocneighbors
+ r-biocparallel
+ r-ggplot2
+ r-ggridges
+ r-pbapply
+ r-r-utils
+ r-seurat))
+ (home-page "https://github.com/carmonalab/STACAS")
+ (synopsis "Sub-type anchoring correction for alignment in Seurat")
+ (description
+ "This package implements methods for batch correction and integration of
+scRNA-seq datasets, based on the Seurat anchor-based integration framework. In
+particular, STACAS is optimized for the integration of heterogenous datasets with
+only limited overlap between cell sub-types (e.g. TIL sets of CD8 from tumor with
+CD8/CD4 T cells from lymphnode), for which the default Seurat alignment methods
+would tend to over-correct biological differences. The 2.0 version of the package
+allows the users to incorporate explicit information about cell-types in order
+to assist the integration process.")
+ (license license:gpl3)))
+
(define-public r-stringendo
(let ((commit "15594b1bba11048a812874bafec0eea1dcc8618a")
(revision "1"))