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Change-Id: Ic2ab73250b60f1733d2721ebd6d3abae719c5a1f --- gnu/packages/bioinformatics.scm | 35 +++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) base-commit: 450a361532573a02389530a6a80b7821683ed41b diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 72fa9d946f..18f929dff7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4056,6 +4056,41 @@ (define-public python-telomerecat telomerecat can produce an estimate in ~1 hour.") (license license:gpl3))) +(define-public python-torchdiffeq + ;; There are neither releases, nor tags. + (let ((commit "a88aac53cae738addee44251288ce5be9a018af3") + (revision "0")) + (package + (name "python-torchdiffeq") + (version (git-version "0.2.5" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/rtqichen/torchdiffeq") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0c2zqbdxqvd5abfpk0im6rcy1ij39xvrmixc6l9znb6bhcxk2jra")))) + (build-system pyproject-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; Run all test files in 'tests/' but skip test_seminorm + (apply invoke "pytest" "-k" "not test_seminorm" + (find-files "tests" "\\.py$")))))))) + (propagated-inputs (list python-numpy python-scipy python-pytorch)) + (native-inputs (list python-pytest python-setuptools)) + (home-page "https://github.com/rtqichen/torchdiffeq") + (synopsis "ODE solvers and adjoint sensitivity analysis in PyTorch") + (description + "This tool provides ordinary differential equation solvers implemented in PyTorch. +Backpropagation through ODE solutions is supported using the adjoint method for constant +memory cost.") + (license license:expat)))) + (define-public python-bioframe (package (name "python-bioframe")