@@ -8454,6 +8454,44 @@ (define-public r-metaneighbor
profiles than cells of different types.")
(license license:expat)))
+(define-public r-methylaid
+ (package
+ (name "r-methylaid")
+ (version "1.36.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MethylAid" version))
+ (sha256
+ (base32 "0mzml9j6f7yycf9747ikkpfvxnwji07h8jhwa9a54ix2d0wyxk3d"))))
+ (properties `((upstream-name . "MethylAid")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biobase
+ r-biocgenerics
+ r-biocparallel
+ r-ggplot2
+ r-gridbase
+ r-hexbin
+ r-matrixstats
+ r-minfi
+ r-rcolorbrewer
+ r-shiny
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://git.bioconductor.org/packages/MethylAid")
+ (synopsis
+ "Quality control of large Illumina DNA Methylation array data sets")
+ (description
+ "This package provides a visual and interactive web application using
+RStudio's shiny package. Bad quality samples are detected using sample-dependent
+and sample-independent controls present on the array and user adjustable
+thresholds. In depth exploration of bad quality samples can be performed using
+several interactive diagnostic plots of the quality control probes present on
+the array. Furthermore, the impact of any batch effect provided by the user can
+be explored.")
+ (license license:gpl2+)))
+
(define-public r-methylkit
(package
(name "r-methylkit")