From patchwork Wed Oct 30 18:34:13 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Navid Afkhami X-Patchwork-Id: 69655 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 8CF0027BBE9; Wed, 30 Oct 2024 18:36:06 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,T_SPF_HELO_TEMPERROR autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 5730327BBE2 for ; Wed, 30 Oct 2024 18:35:35 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1t6DXB-0004DF-4p; Wed, 30 Oct 2024 14:35:09 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1t6DX6-0004CH-Kt for guix-patches@gnu.org; Wed, 30 Oct 2024 14:35:05 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1t6DX6-000327-Bh for guix-patches@gnu.org; Wed, 30 Oct 2024 14:35:04 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:Date:From:To:Subject; bh=DO9v8hfZfcK6chkxSZMmzj9vsKKwlC2LHCh2jHDTBH0=; b=ViE2Tr7oD1Po+VKB7Up1TBORVtqrCd8GMTarAi/L83NHUn82ULM32XSS0djJ972IFZYAyegf9XihBOhKiJGmMc5e4VEoSCrwXpf9qeo5m/oDCLYqt12NP02873qdxInYQMCRv0g7+KqzksHZ3cG1NURp9iXte67dzkyOWUpx/iycIK1A/Sgu0wEGQDcr9rsuOPM+SJXwXAUoYHT4ROEhZdQtkX3jPikKBGmSnEhEBAlvAnfoHRSsB+lYd8MSUsnKujEyf0vXBhNDsK2nYdAaJzPUk8QUcpoT6yFuYOUh9E0wW1eUUDoVgBZsi9xHLGBHNqR04N5NvxtEKAy6/XMWpQ==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1t6DX4-000416-6H; Wed, 30 Oct 2024 14:35:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#74115] [PATCH] gnu: Add r-fateid. Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: laurent.gatto@gmail.com, rekado@elephly.net, zimon.toutoune@gmail.com, guix-patches@gnu.org Resent-Date: Wed, 30 Oct 2024 18:35:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 74115 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 74115@debbugs.gnu.org Cc: Navid Afkhami , Laurent Gatto , Ricardo Wurmus , Simon Tournier X-Debbugs-Original-To: X-Debbugs-Original-Xcc: Laurent Gatto , Ricardo Wurmus , Simon Tournier Received: via spool by submit@debbugs.gnu.org id=B.173031327415376 (code B ref -1); Wed, 30 Oct 2024 18:35:01 +0000 Received: (at submit) by debbugs.gnu.org; 30 Oct 2024 18:34:34 +0000 Received: from localhost ([127.0.0.1]:36610 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t6DWb-0003zw-V5 for submit@debbugs.gnu.org; Wed, 30 Oct 2024 14:34:34 -0400 Received: from lists.gnu.org ([209.51.188.17]:41144) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t6DWZ-0003zo-4W for submit@debbugs.gnu.org; Wed, 30 Oct 2024 14:34:32 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1t6DWY-00048R-U6 for guix-patches@gnu.org; Wed, 30 Oct 2024 14:34:30 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1t6DWS-0002nx-EN for guix-patches@gnu.org; Wed, 30 Oct 2024 14:34:30 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1730313259; x=1732127660; bh=2cgKT70WKLS83MS tojaXLnqRj7PpqYfF2JXSuIxu5cw=; b=Q/rLm59EUMuGYuVG5ob7cTKXS1++Ue8 Z1a3d4jOq3Yqj5tJuV+dHVQG0IWKQaY3dMMquE9zd/9hzKlE1DIEXceEQwcmzxeM bHj5088yYNhNFZ5GgZcR6qcoNyhBsNBHbQ7Y7NhPBS3gJFD3EQkpa+41nsy3EmJM 1g7XMWr2NMSM= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 262D5300175 for ; Wed, 30 Oct 2024 19:34:19 +0100 (CET) Received: from localhost (141.80.121.92) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.11; Wed, 30 Oct 2024 19:34:18 +0100 From: Navid Afkhami Date: Wed, 30 Oct 2024 18:34:13 +0000 Message-ID: X-Mailer: git-send-email 2.43.0 MIME-Version: 1.0 X-Originating-IP: [141.80.121.92] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3223-9.1.2019-28764.001 X-TM-AS-Result: No-10--6.080300-5.000000 X-TMASE-MatchedRID: a3KJLn6RIiIEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhdqK Kei3fK/BuP2uihwIy0iu5Y9WGrdMHqCWcLEkbwkVb3Pl2Oyrc7BrcVVB7l3jO8+b4dvynxi2+3D GARmE5RAGqml1jRSLR3pbIhOtEPScwui2PufQomuwHXnHVkAsxb2XNUZZqZaA4ftEeSASkbK5xE k7XHDs76JYuGaIjh0/7lupSRApbpa6XEyrDLNWUZa+5iA7xXkPH4pNnFLAi64eE88QQp8d2/PGv 3f8S1bZ66dfdio55Hg40LyTJqYe+37cGd19dSFd X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.080300-5.000000 X-TMASE-Version: SMEX-14.0.0.3223-9.1.2019-28764.001 X-TM-SNTS-SMTP: 682AB514C3F566C045EB3F8B44E11A9893DF7D29BDECCB78928FF5392CF474292000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_VALIDITY_CERTIFIED_BLOCKED=0.001, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-fateid): New variable. Change-Id: If8d8dc20a0d377173a7428ebbfa238695a5d8002 --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) base-commit: d6f775c30c6f47e174f6110d1089edc6315600e4 prerequisite-patch-id: 54292fa0b75533f02730e2da44993ad685d4a432 prerequisite-patch-id: 360575ef7e49c4e4e6b52644964df061856aee57 diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 212f305ba1..aa57134166 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1038,6 +1038,35 @@ (define-public r-emdist Distance (EMD).") (license license:expat))) +(define-public r-fateid + (package + (name "r-fateid") + (version "0.2.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "FateID" version)) + (sha256 + (base32 "0sgvaqhqkmmkcsl53bm1jlfpzrvzfb5cz8k513nizfsi638vydlm")))) + (properties `((upstream-name . "FateID"))) + (build-system r-build-system) + (propagated-inputs (list r-locfit + r-matrixstats + r-pheatmap + r-princurve + r-randomforest + r-rcolorbrewer + r-rtsne + r-som + r-umap)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=FateID") + (synopsis "Quantification of fate bias in multipotent progenitors") + (description + "This package computes cell fate bias for multi-lineage single-cell data. +It also provides visualization tools for analyzing these biases.") + (license license:gpl3))) + (define-public r-fuzzyjoin (package (name "r-fuzzyjoin")